BAC Information

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BAC

Clone NameB6Ng01-069I20
Chromosome17 (Build37)
Map Location 16,109,228 - 16,221,026
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
Downstream geneLOC100041383, LOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069I20.bB6Ng01-069I20.g
ACCDH887825DH887826
length1,0901,029
definitionDH887825|Mus musculus domesticus DNA, BAC clone: B6Ng01-069I20, 5' end.DH887826|Mus musculus domesticus DNA, BAC clone: B6Ng01-069I20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,109,228 - 16,110,330)(16,219,993 - 16,221,026)
sequence
gaattctttagcatattcaagcagcaccagaagattaaacaggcttccat
ctcagcttattaccagctacatatgcttcttgagtgtttatttaattcaa
attttaatgcttacttatgacaaaaagcttattatgatactgtataatta
tgtagtaatacttcagtgattcctgtagatccttgattaattcatttttg
tgcatttcttatccttcatctaaagttctagttttccttagagatgagtt
atctttcgtttaatgacaacagaaattgaaagtagagggcattttgtact
gtggtgactcctttggctacaataaacagggtaactggtaattctgagaa
ccttgcacttattttgggaatactgtttcttaattctttaaatataaaga
caaaacctctttcctcagaaatgaattcattgtatctcacagccaataaa
atcttcctcctgaggttttgatgtatgagctgctttaacttcaaaaggaa
acgtctgtggcatttaacttctgtctctgatcagcattagaagacaattg
cacttaatatcttctgcatcgtgaagccttcagaattagagaagccatga
gtatgaagaataagaacctttaggagacgaaactatgtagggtttcttga
gtaaaggttgcaataactaaattcttattccttcatggaaaaaaatttaa
aaagattacatgtttactaaatcttgagtataaaatagtatgattgatgt
tgtataaatgtatataaaatttaatgtcaataaactagctgtaggggaga
attatcaattataaaaccttccagaaacttctagagaccacttattccta
gacatatattctggtgatgcagaaaaatacagacatggtttgacagaaaa
aggaaccttcagcattgaggttttgttttttactgtctattgtgatgtta
agtgcaagccccaagacctgagtctgcatgcagcccttgtgacctctccc
catgttaatctgattgatgataacatgccagagccatatctgggcagaag
agacataggtgggtgagttcatggcctgggtcagaaagag
gaattctcattctgagcagagttctaaataccaagtgttcaacaaatgac
aaaatctgctcctaatcaatgaattaactacaggagttcttcttagcttc
cttccttacaccctaaccttttctaagtctattatttctaagagactaca
gccccttcaaacaaatgtgccacataacttgttttctgtttaggtaacat
atgctgtcaccctcttaattaagactctgattaggggacctagaaatatt
attatgcatgtggtttgatgtgagcatttgaattaacccatgagactaat
tatgctcaacactttatcttcaagatggcaagtgtaataactcttgagaa
gagattgctttctgaaacaggcggagtaaagaaaatgaagtctcttacat
gggaaatcagtcataaaatttaatagaaaaatgagcacagggaatgaaga
gaatactgagaggatttcaagaagaaatatcatagttctttaaatcttct
ttgcaataatttggactgcaacaaaacatgtatttatttaatctcgttgg
ttacattacacatacccaccataaagagaagaaagatcctcatagtgcca
taacattgcaaactggggaatatgtgggcttcaggatgattaacacatta
catataaacctagttattaaaaattattactccacccaattttaaaatta
tgtcaggagtcttctacatctatatatacctatatatctacatacatgta
aatatatatgtatagatacgtatatacatctataactatatcatccacat
ctgctatagtcatgtcctagtggaaatctcacctagtttaggaattgaaa
gactaagaagttaagtctgaacatacctcaaaaccgatgcttgctggcct
cattcttaagagtcttctttcagtgttcccttcctaatgggactagtata
tcacatcctcactaatgagtgattatcggtctatacgtttcactatttgc
agaccacactggtagctcgaccacttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_16109228_16110330
seq2: B6Ng01-069I20.b_41_1130

seq1  GAATTCTTTAGCATATTCAAGCAGCACCAGAAGATTAAACAGGCTTCCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGCATATTCAAGCAGCACCAGAAGATTAAACAGGCTTCCAT  50

seq1  CTCAGCTTATTACCAGCTACATATGCTTCTTGAGTGTTTATTTAATTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTTATTACCAGCTACATATGCTTCTTGAGTGTTTATTTAATTCAA  100

seq1  ATTTTAATGCTTACTTATGACAAAAAGCTTATTATGATACTGTATAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATGCTTACTTATGACAAAAAGCTTATTATGATACTGTATAATTA  150

seq1  TGTAGTAATACTTCAGTGATTCCTGTAGATCCTTGATTAATTCATTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTAATACTTCAGTGATTCCTGTAGATCCTTGATTAATTCATTTTTG  200

seq1  TGCATTTCTTATCCTTCATCTAAAGTTCTAGTTTTCCTTAGAGATGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTCTTATCCTTCATCTAAAGTTCTAGTTTTCCTTAGAGATGAGTT  250

seq1  ATCTTTCGTTTAATGACAACAGAAATTGAAAGTAGAGGGCATTTTGTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCGTTTAATGACAACAGAAATTGAAAGTAGAGGGCATTTTGTACT  300

seq1  GTGGTGACTCCTTTGGCTACAATAAACAGGGTAACTGGTAATTCTGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGACTCCTTTGGCTACAATAAACAGGGTAACTGGTAATTCTGAGAA  350

seq1  CCTTGCACTTATTTTGGGAATACTGTTTCTTAATTCTTTAAATATAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCACTTATTTTGGGAATACTGTTTCTTAATTCTTTAAATATAAAGA  400

seq1  CAAAACCTCTTTCCTCAGAAATGAATTCATTGTATCTCACAGCCAATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCTCTTTCCTCAGAAATGAATTCATTGTATCTCACAGCCAATAAA  450

seq1  ATCTTCCTCCTGAGGTTTTGATGTATGAGCTGCTTTAACTTCAAAAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCTCCTGAGGTTTTGATGTATGAGCTGCTTTAACTTCAAAAGGAA  500

seq1  ACGTCTGTGGCATTTAACTTCTGTCTCTGATCAGCATTAGAAGACAATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTGTGGCATTTAACTTCTGTCTCTGATCAGCATTAGAAGACAATTG  550

seq1  CACTTAATATCTTCTGCATCGTGAAGCCTTCAGAATTAGAGAAGCCATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAATATCTTCTGCATCGTGAAGCCTTCAGAATTAGAGAAGCCATGA  600

seq1  GTATGAAGAATAAGAACCTTTAGGAGACGAAACTATGTAGGGTTTCTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAAGAATAAGAACCTTTAGGAGACGAAACTATGTAGGGTTTCTTGA  650

seq1  GTAAAGGTTGCAATAACTAAATTCTTATTCCTTCATGGAAAAAAATTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGTTGCAATAACTAAATTCTTATTCCTTCATGGAAAAAAATTTAA  700

seq1  AAAGATTACATGTTTACTAAATCTTGAGTATAAAATAGTATGATTGATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTACATGTTTACTAAATCTTGAGTATAAAATAGTATGATTGATGT  750

seq1  TGTATAAATGTATATAAAATTTAATGTCAATAAACTAGCTGTAGGGGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAATGTATATAAAATTTAATGTCAATAAACTAGCTGTAGGGGAGA  800

seq1  ATTATCAATTATAAAACCTTCCAGAAACTTCTAGAGACCACTTATTTCCT  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATTATCAATTATAAAACCTTCCAGAAACTTCTAGAGACCACTTA-TTCCT  849

seq1  AGACATATATTCTGGTGATGCAGAAAAATACAGACATGGTTTGACAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATATATTCTGGTGATGCAGAAAAATACAGACATGGTTTGACAGAAA  899

seq1  AAGGAACC-TCAGCATTGAGGTTTTGTTTTTTACTGTCTATTGTGATGTT  949
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACCTTCAGCATTGAGGTTTTGTTTTTTACTGTCTATTGTGATGTT  949

seq1  AAGTGCAAGGCCCCAAGACCTGGAGTCTGCATGCAGCCCTTGTGACCTTC  999
      |||||||| |||||||||||| ||||||||||||||||||||||||| ||
seq2  AAGTGCAA-GCCCCAAGACCT-GAGTCTGCATGCAGCCCTTGTGACC-TC  996

seq1  TCCCCATGTTAATCCTGATTGATGAATAAACATGCCAAGAGCCAATATCT  1049
      ||||||||||||| |||||||||||   |||||||| |||||| ||||||
seq2  TCCCCATGTTAAT-CTGATTGATGA--TAACATGCC-AGAGCC-ATATCT  1041

seq1  GGGCAGAAGAGACATAGGTGGGGTTGAAGTTTCATGGGCTTGGGTCAGAG  1099
      ||||||||||||||||||||||  |||   ||||| ||| ||||||||| 
seq2  GGGCAGAAGAGACATAGGTGGG--TGA--GTTCAT-GGCCTGGGTCAGAA  1086

seq1  AGAG  1103
      ||||
seq2  AGAG  1090

seq1: chr17_16219993_16221026
seq2: B6Ng01-069I20.g_71_1099 (reverse)

seq1  CAGAAGTGGTTCTGTGGCTTCCCAGTTGTGGTCTGGCAATTAGTG-AACG  49
      ||||||||||     |   | |||| |||||||| |||| ||||| ||||
seq2  CAGAAGTGGT----CGAGCTACCAG-TGTGGTCT-GCAAATAGTGAAACG  44

seq1  TATAGACCCGATAATCACTCATTAGTAGAGATGTGATATTACTAGTCCAA  99
      |||||| |||||||||||||||||||   ||||||||| ||||||||| |
seq2  TATAGA-CCGATAATCACTCATTAGTGAGGATGTGATA-TACTAGTCCCA  92

seq1  TTAGGAAAGGGAACACTGGAAAGAGACTC-TAAGAATGAGGCCAGCAAGC  148
      ||||| |||||||||||| ||  |||||| ||||||||||||||||||||
seq2  TTAGG-AAGGGAACACTGAAAGAAGACTCTTAAGAATGAGGCCAGCAAGC  141

seq1  ATCGGTTTTGAGGTATGTTCAGAC-TAACTTCTTAGTCTTTCAATTCCT-  196
      |||||||||||||||||||||||| |||||||||||||||||||||||| 
seq2  ATCGGTTTTGAGGTATGTTCAGACTTAACTTCTTAGTCTTTCAATTCCTA  191

seq1  AACTAGGTGGGGTTTCCACTAGGACATGACTATAGCAGATGTGGATGATA  246
      ||||||||| | ||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGTGAGATTTCCACTAGGACATGACTATAGCAGATGTGGATGATA  241

seq1  TAGTTATAGATGTATATACGTATCTATACATATATATTTACATGTATGTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATAGATGTATATACGTATCTATACATATATATTTACATGTATGTA  291

seq1  GATATATAGGTATATATAGATGTAGAAGACTCCTGACATAATTTTAAAAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATAGGTATATATAGATGTAGAAGACTCCTGACATAATTTTAAAAT  341

seq1  TGGGTGGAGTAATAATTTTTAATAACTAGGTTTATATGTAATGTGTTAAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGAGTAATAATTTTTAATAACTAGGTTTATATGTAATGTGTTAAT  391

seq1  CATCCTGAAGCCCACATATTCCCCAGTTTGCAATGTTATGGCACTATGAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGAAGCCCACATATTCCCCAGTTTGCAATGTTATGGCACTATGAG  441

seq1  GATCTTTCTTCTCTTTATGGTGGGTATGTGTAATGTAACCAACGAGATTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTCTTCTCTTTATGGTGGGTATGTGTAATGTAACCAACGAGATTA  491

seq1  AATAAATACATGTTTTGTTGCAGTCCAAATTATTGCAAAGAAGATTTAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATACATGTTTTGTTGCAGTCCAAATTATTGCAAAGAAGATTTAAA  541

seq1  GAACTATGATATTTCTTCTTGAAATCCTCTCAGTATTCTCTTCATTCCCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATGATATTTCTTCTTGAAATCCTCTCAGTATTCTCTTCATTCCCT  591

seq1  GTGCTCATTTTTCTATTAAATTTTATGACTGATTTCCCATGTAAGAGACT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCATTTTTCTATTAAATTTTATGACTGATTTCCCATGTAAGAGACT  641

seq1  TCATTTTCTTTACTCCGCCTGTTTCAGAAAGCAATCTCTTCTCAAGAGTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTCTTTACTCCGCCTGTTTCAGAAAGCAATCTCTTCTCAAGAGTT  691

seq1  ATTACACTTGCCATCTTGAAGATAAAGTGTTGAGCATAATTAGTCTCATG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACACTTGCCATCTTGAAGATAAAGTGTTGAGCATAATTAGTCTCATG  741

seq1  GGTTAATTCAAATGCTCACATCAAACCACATGCATAATAATATTTCTAGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAATTCAAATGCTCACATCAAACCACATGCATAATAATATTTCTAGG  791

seq1  TCCCCTAATCAGAGTCTTAATTAAGAGGGTGACAGCATATGTTACCTAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTAATCAGAGTCTTAATTAAGAGGGTGACAGCATATGTTACCTAAA  841

seq1  CAGAAAACAAGTTATGTGGCACATTTGTTTGAAGGGGCTGTAGTCTCTTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAACAAGTTATGTGGCACATTTGTTTGAAGGGGCTGTAGTCTCTTA  891

seq1  GAAATAATAGACTTAGAAAAGGTTAGGGTGTAAGGAAGGAAGCTAAGAAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAATAGACTTAGAAAAGGTTAGGGTGTAAGGAAGGAAGCTAAGAAG  941

seq1  AACTCCTGTAGTTAATTCATTGATTAGGAGCAGATTTTGTCATTTGTTGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTGTAGTTAATTCATTGATTAGGAGCAGATTTTGTCATTTGTTGA  991

seq1  ACACTTGGTATTTAGAACTCTGCTCAGAATGAGAATTC  1034
      ||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGGTATTTAGAACTCTGCTCAGAATGAGAATTC  1029