BAC Information

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BAC

Clone NameB6Ng01-069O16
Chromosome17 (Build37)
Map Location 23,714,678 - 23,919,063
singlet/doubletdoublet
Overlap geneZfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik
Upstream geneLOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213
Downstream geneLOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069O16.bB6Ng01-069O16.g
ACCDH888076DH888077
length966860
definitionDH888076|Mus musculus domesticus DNA, BAC clone: B6Ng01-069O16, 5' end.DH888077|Mus musculus domesticus DNA, BAC clone: B6Ng01-069O16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,918,108 - 23,919,063)(23,714,678 - 23,715,536)
sequence
gaattcttttggcccagcctggtctcttttaacccatcccagccttgaac
tctgtaggtggccaagggtgaccttgaactcctaaacctctgcctctact
tctgttgagatcataggtacctgctaccattggtgttgggactcaaatcc
atggctttgtgcatgctagacaggcactctccaatgatatccccagccct
ggagtccatgaggaagacttgggccttctccaatgcttgttcagttattt
gtatcatatcgggcttgtgaatatccattttattcttagggttgtaatcc
tgactacttaattaaggtaggaccccactctggagcagttttcttcatag
ctgacttttcttattggaattggcttttggccagtgagcctggttccagt
cctgattctcaccagctgtgtggtactgggccactacattaagtgcccaa
ggtcacctccctgagggcaggcagatcgggatgatggtaattcattcctt
cctctctttctttctttctttctctctttctttctttctttctttctttc
tttctttctttctttctttctttctttctttcttttcttttctttctttc
tttctttctttctttctttctttctttctttctttcttttttctttctct
ctttaagctttacttattttatatatgtgagtacactgtagctgtcttca
gacacaccagatgagggcattggatcccattttcagatggttgagggaat
tgaactccggacctctggaagagcagtcagtgctcttaactgctgaacct
gatgatagtaattcttggggagggaggcccctgggttccagtaacgaaag
gtaaagattgaaatcagatctccatcccaggtcaggttgccttgtgatgg
acttgggcctggtgcctaaccttttctcatacggctccatccatggggtt
tcgaagccgctcgttg
gaattccatttaggagtttaaggtcatccaaagctataaaatgagttcaa
gactaccctgggctacatgagaccctgttctcaaaagaaaaaaaaattag
gtaaatatgtgagaggccccaagtcccgtctctaaaagtaaagtcaacag
ccgggtgtggtggtgcacgcctttaatctcagcactcgggaggcagaggc
aggtggatttctgacagaatgagttccaggacagccagggctacacagag
aaaccctgtctcgaaaaaccaaaaaaaaaaaaaaaaggaaagtcaaacaa
gtctctttggtgacagtccgtcctctcccagagcttggctggccctacct
ctgtgtccctgagcaagtaactgaactcacgagggaggagcagagatggc
tcagctcggctctcagctttcctcatcatggtggacaagcagtgggcaca
gaagaacaaaccatagaagtccaccttactcctgcacttgcatttaggag
aatcaggtctcaggcagagaggctgggatactgacaaccataggactgat
gtgctgtgtccctgagaggtttcctatagttggtaagagcggagacctgt
gattcccatgcctcaagggaagaaaggaatttgctaggtcgattgttggt
ttgagcactggcaaatgctaacagcggctggtaagcaaacctaagacaat
tacaggagtgggggggggactgatgtctcaggaccaccactgacagaact
gccaagggcagcgtggctggaaagaccgttcagtcattcaagtgcctgcc
aacaaagaaaggtgtgaaagatctaagtccatccttaggaaccacagtac
aagccaacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_23918108_23919063
seq2: B6Ng01-069O16.b_43_1008 (reverse)

seq1  CAACAGAGCGGCCTAGAAACCCCTTGGATGAAGCCGTATGAGGAAATGGT  50
      |||| ||||||| | |||||||| |||||| |||||||||| |||| |||
seq2  CAAC-GAGCGGCTTCGAAACCCCATGGATGGAGCCGTATGA-GAAAAGGT  48

seq1  CAGGCACCATGCCCAAGTCCACCACAAAGCAACCTGAGCCAGGAATGAGA  100
       |||||||| ||||||||||| ||||| ||||||||| |  |||  ||||
seq2  TAGGCACCAGGCCCAAGTCCATCACAAGGCAACCTGACCTGGGATGGAGA  98

seq1  TCTGAATTCAATCTTGACC-TTCATTACTGGAACCCAGTGGCCTCCCT-C  148
      ||||| ||||||||| ||| ||| |||||||||||||| ||||||||| |
seq2  TCTGATTTCAATCTTTACCTTTCGTTACTGGAACCCAGGGGCCTCCCTCC  148

seq1  CCAAGAATTACTATCATCCGGCTCAGCAGTTAAGAGCACTGACTGCTCTT  198
      |||||||||||||||||| || ||||||||||||||||||||||||||||
seq2  CCAAGAATTACTATCATCAGGTTCAGCAGTTAAGAGCACTGACTGCTCTT  198

seq1  CCAGAGGTCCTGAGTTCAATTCCCACAACCATCTG-AAATGGGATCCAAT  247
      |||||||||| ||||||||||||| |||||||||| ||||||||||||||
seq2  CCAGAGGTCCGGAGTTCAATTCCCTCAACCATCTGAAAATGGGATCCAAT  248

seq1  GCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCACATATATAA  297
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCATCTGGTGTGTCTGAAGACAGCTACAGTGTACTCACATATATAA  298

seq1  AATAAGTAAAGCTTAAAGAGAGAAAGAA-----AAAGAAAGAAAGAAAGA  342
      ||||||||||||||||||||||||||||     |||||||||||||||||
seq2  AATAAGTAAAGCTTAAAGAGAGAAAGAAAAAAGAAAGAAAGAAAGAAAGA  348

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAGA----AAAGAAAGAAAGA  388
      |||||||||||||||||||||||||||||||||    |||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAGAAAAGAAAGAAAGAAAGA  398

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAAA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAAA  448

seq1  GAAAGAAAGAAAGAGAGGAAGGAATGAATTACCATCATCCCGATCTGCCT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAGAGGAAGGAATGAATTACCATCATCCCGATCTGCCT  498

seq1  GCCCTCAGGGAGGTGACCTTGGGCACTTAATGTAGTGGCCCAGTACCACA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCAGGGAGGTGACCTTGGGCACTTAATGTAGTGGCCCAGTACCACA  548

seq1  CAGCTGGTGAGAATCAGGACTGGAACCAGGCTCACTGGCCAAAAGCCAAT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGTGAGAATCAGGACTGGAACCAGGCTCACTGGCCAAAAGCCAAT  598

seq1  TCCAATAAGAAAAGTCAGCTATGAAGAAAACTGCTCCAGAGTGGGGTCCT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATAAGAAAAGTCAGCTATGAAGAAAACTGCTCCAGAGTGGGGTCCT  648

seq1  ACCTTAATTAAGTAGTCAGGATTACAACCCTAAGAATAAAATGGATATTC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAATTAAGTAGTCAGGATTACAACCCTAAGAATAAAATGGATATTC  698

seq1  ACAAGCCCGATATGATACAAATAACTGAACAAGCATTGGAGAAGGCCCAA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCCGATATGATACAAATAACTGAACAAGCATTGGAGAAGGCCCAA  748

seq1  GTCTTCCTCATGGACTCCAGGGCTGGGGATATCATTGGAGAGTGCCTGTC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCTCATGGACTCCAGGGCTGGGGATATCATTGGAGAGTGCCTGTC  798

seq1  TAGCATGCACAAAGCCATGGATTTGAGTCCCAACACCAATGGTAGCAGGT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATGCACAAAGCCATGGATTTGAGTCCCAACACCAATGGTAGCAGGT  848

seq1  ACCTATGATCTCAACAGAAGTAGAGGCAGAGGTTTAGGAGTTCAAGGTCA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATGATCTCAACAGAAGTAGAGGCAGAGGTTTAGGAGTTCAAGGTCA  898

seq1  CCCTTGGCCACCTACAGAGTTCAAGGCTGGGATGGGTTAAAAGAGACCAG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGCCACCTACAGAGTTCAAGGCTGGGATGGGTTAAAAGAGACCAG  948

seq1  GCTGGGCCAAAAGAATTC  956
      ||||||||||||||||||
seq2  GCTGGGCCAAAAGAATTC  966

seq1: chr17_23714678_23715536
seq2: B6Ng01-069O16.g_68_927

seq1  GAATTCCATTTAGGAGTTTAAGGTCATCCAAAGCTATAAAATGAGTTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTAGGAGTTTAAGGTCATCCAAAGCTATAAAATGAGTTCAA  50

seq1  GACTAGCCTGGGCTACATGAGACCCTGTTCTCAAAAGAAAAAAAAATTAG  100
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACCCTGGGCTACATGAGACCCTGTTCTCAAAAGAAAAAAAAATTAG  100

seq1  GTAAATATGTGAGAGGCCCCAAGTCCCGTCTCTAAAAGTAAAGTCAACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATATGTGAGAGGCCCCAAGTCCCGTCTCTAAAAGTAAAGTCAACAG  150

seq1  CCGGGTGTGGTGGTGCACGCCTTTAATCTCAGCACTCGGGAGGCAGAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGTGTGGTGGTGCACGCCTTTAATCTCAGCACTCGGGAGGCAGAGGC  200

seq1  AGGTGGATTTCTGACAGAATGAGTTCCAGGACAGCCAGGGCTACACAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGATTTCTGACAGAATGAGTTCCAGGACAGCCAGGGCTACACAGAG  250

seq1  AAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAGGAAAGTCAAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAGGAAAGTCAAACAA  300

seq1  GTCTCTTTGGTGACAGTCCGTCCTCTCCCAGAGCTTGGCTGGCCCTACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTTGGTGACAGTCCGTCCTCTCCCAGAGCTTGGCTGGCCCTACCT  350

seq1  CTGTGTCCCTGAGCAAGTAACTGAACTCACGAGGGAGGAGCAGAGATGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCCCTGAGCAAGTAACTGAACTCACGAGGGAGGAGCAGAGATGGC  400

seq1  TCAGCTCGGCTCTCAGCTTTCCTCATCATGGTGGACAAGCAGTGGGCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCGGCTCTCAGCTTTCCTCATCATGGTGGACAAGCAGTGGGCACA  450

seq1  GAAGAACAAACCATAGAAGTCCACCTTACTCCTGCACTTGCATTTAGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACAAACCATAGAAGTCCACCTTACTCCTGCACTTGCATTTAGGAG  500

seq1  AATCAGGTCTCAGGCAGAGAGGCTGGGATACTGACAACCATAGGACTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGTCTCAGGCAGAGAGGCTGGGATACTGACAACCATAGGACTGAT  550

seq1  GTGCTGTGTCCCTGAGAGGTTTCCTATAGTTGGTAAGAGCGGAGACCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTGTCCCTGAGAGGTTTCCTATAGTTGGTAAGAGCGGAGACCTGT  600

seq1  GATTCCCATGCCTCAAGGGAAGAAAGGAATTTGCTAGGTCGATTGTTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCCATGCCTCAAGGGAAGAAAGGAATTTGCTAGGTCGATTGTTGGT  650

seq1  TTGAGCACTGGCAAATGCTAACAGCGGCTGGTAAGCAAACCTAAGACAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCACTGGCAAATGCTAACAGCGGCTGGTAAGCAAACCTAAGACAAT  700

seq1  TACAGGAGTGGGTGGGGGACTGATGTCTCAGGACCACCACTGACAGAACT  750
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TACAGGAGTGGGGGGGGGACTGATGTCTCAGGACCACCACTGACAGAACT  750

seq1  GCCAA-GGCAGCGTGGCTGGAAAGACCGTTCAGTCAGTCAAGTGCCTGCC  799
      ||||| |||||||||||||||||||||||||||||| |||||||||||||
seq2  GCCAAGGGCAGCGTGGCTGGAAAGACCGTTCAGTCATTCAAGTGCCTGCC  800

seq1  AACAAAG-AAGGTGTG-AAGATCTAAGTTCCATCCTTAGCAACCACAGTA  847
      ||||||| |||||||| |||||||||| ||||||||||| ||||||||||
seq2  AACAAAGAAAGGTGTGAAAGATCTAAG-TCCATCCTTAGGAACCACAGTA  849

seq1  CAAGCCAGACAC  859
      ||||||| ||||
seq2  CAAGCCA-ACAC  860