BAC Information

Click to search

BAC

Clone NameB6Ng01-070E03
Chromosome17 (Build37)
Map Location 44,712,051 - 44,854,084
singlet/doubletdoublet
Overlap geneRunx2
Upstream genePla2g7, Tdrd6, Slc25a27, Cyp39a1, Dscr1l1, Enpp5, Enpp4, Clic5
Downstream geneSupt3h, 4930564C03Rik, EG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070E03.bB6Ng01-070E03.g
ACCDH888317DH888318
length1,0931,216
definitionDH888317|Mus musculus domesticus DNA, BAC clone: B6Ng01-070E03, 5' end.DH888318|Mus musculus domesticus DNA, BAC clone: B6Ng01-070E03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,852,985 - 44,854,084)(44,712,051 - 44,713,273)
sequence
gaattcactctgaaggtgttagtgtcactgtcactacacatggcctctgc
aaactttatcgtactttatttttgaatacatttcagggaagggcagttca
tagaactttacagttaatagaaaataaaattatagcttagtctttcccat
agaactgctttataactttggggaacaagtggatagctattcagtcatga
taactttttagctaaggcactccgctcatcccttctgtgcagtgggaggg
gccaaagagacccacgaggctgaggaagcaaactataaactttaaaatct
tgagcttagtaaaaaagcatttgtgtgtgtttcccatggcccaagaatgc
ggtgtttttttttttttttgttttgtttttttttttttttttaagctcgc
ccactcagttccctttataaagagcacaggacttaattacaaagaattta
tttgcaaatgataacttgcttcatcattacaaacacggttgtctggccat
tttctagtaactgttttggatagtttctttaacagagagatagatacaag
ctaggttcatgtccaccttggtttctttgtctatgtcttgcaaagcttta
tctggtgctcagctgcaggtagtgtctctgtctaggccaggatttattct
cttcctgaatctgggtcagacctgactgacttccactgccgcccacagtg
acttgagcaagcctggcactaaaatacatctacagagcaaaggttattcc
aagtcgaggtgagacgagttctgtagcacataatataatgtaaatagcat
agaatgggctgcctttgcagctgaatacattggaagtcccaggcattgca
attagaggttaaatttggcttttgatgggggcaggcagcaatggaagtgt
ttgttctaacttgatcttccacctagacagtgaggacgattctttccatc
cccagaagtaaggaggaggcctagaggcttcgcctcttccttgtactgtg
catctttagcaatggatcaatcttacagtagccccacccccacctccatt
tctttttgcccctgtctttgtacaaagcttgcttgagacaagg
gaattcttaaggagagcaagggaaattaaaaataagcaacaacccagaat
actcagaaaaagtacctttctaagaaaggagaaggaatgaaagactgaat
ttgttcgttttacaaagaaaatgaccaaggaaggtagacctgaaatgtaa
ataaagcagtgggcagaggcaaagcagcatctggaggaagccaaacagta
gctgtgcctagctttaactatattagtatattacagccttattaattagc
taaggaattagttaaggaaattaattaattaagaaattaaatatatacat
atatattaaattatatcctaatcataatggtataggagttattttattga
tgatagtaactaaaatctaaagactaactcacctaatactaaaatgcaaa
gaagcaatcttgtcttttgagcacacacacacacacacacacacacacac
acacacacacaggtacacgcttggctcctcctctgtgtgggagtgtgtct
acatgagtgcagattcctgcaatgccagaaaatgtccacgatcctccaga
gctggagctgctcttgggatgtgcttaacgaggctgctggaaactgaact
ccagatctctgcaagagcatcaagccccagcctgtgtattttacaaccaa
gagaaaatccaagttagtagaaaaccgttacataaaacttacagatgggc
tatcacaatcaagaaagctgtgcttcttgcatcagtcaagaaaacattca
agctttcattttaattatgctaaactaaacataaaagattaaaattgtag
gtgaccagtaaaagaaactagaactcatgaggtagagggaattagaacag
aaggtgaagtgaaagaacataacaactaatgcagaccaagaataaaggga
aaggacaggaaagggatcgttagcattaaaaatgcaaagtgctgaaaatg
aaaccaaattgtttggtcaggacacataatgtaagcaaacctccaattaa
acaacaaagacatcgagacgttagcttttcttggaagaatagttggtcca
agttgagaagttctaagtgagccttcgaaggtaacccaagcactgccaag
tcacacggggcctgagaaagcttagctgagatgccaaggtgcctcaccaa
ggaaaggccaaagaaagccacctccagagaggtgttctcttagccctcca
gaaagggtggccatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_44852985_44854084
seq2: B6Ng01-070E03.b_46_1138 (reverse)

seq1  CCTTG-CTCAGGCAAGCCTTTGTGACAAAGACAGGGGC-ATAAGAGATGG  48
      ||||| |||| ||||| |||||| |||||||||||||| | |||| ||||
seq2  CCTTGTCTCAAGCAAG-CTTTGT-ACAAAGACAGGGGCAAAAAGAAATGG  48

seq1  AGGTGGGGGTGGGGGCTACTGTAAGATTGATCCCATTGCTAAAAGATGCA  98
      |||||||||| |||||||||||||||||||| |||||||| |||||||||
seq2  AGGTGGGGGT-GGGGCTACTGTAAGATTGAT-CCATTGCT-AAAGATGCA  95

seq1  CAGTAC-AGGAAGAGGCGAAGCCCTCTAGGCCTCCTCCCTTACTTCTGGG  147
      |||||| |||||||||||||| |||||||||||||| |||||||||||||
seq2  CAGTACAAGGAAGAGGCGAAG-CCTCTAGGCCTCCT-CCTTACTTCTGGG  143

seq1  GATGGAAAGAATCCGTCCTCACTGTCTAGGTGGAAGATCAAGTTAGAACA  197
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GATGGAAAGAAT-CGTCCTCACTGTCTAGGTGGAAGATCAAGTTAGAACA  192

seq1  AACACTTCCATTGCTGCCTGCCCCCATCAAAAGCCAAATTTAACCTCCTA  247
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AACACTTCCATTGCTGCCTGCCCCCATCAAAAGCCAAATTTAACCT-CTA  241

seq1  ATTGCAATGCCTGGGACTTCCAATGTATTCAGCCTGCAAAGGCAGCCCAT  297
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATTGCAATGCCTGGGACTTCCAATGTATTCAG-CTGCAAAGGCAGCCCAT  290

seq1  TCTATGCTATTTACATTATATTATGTGCTACAGAACTCGTCTCACCTCGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGCTATTTACATTATATTATGTGCTACAGAACTCGTCTCACCTCGA  340

seq1  CTTGGAATAACCTTTGCTCTGTAGATGTATTTTAGTGCCAGGCTTGCTCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAATAACCTTTGCTCTGTAGATGTATTTTAGTGCCAGGCTTGCTCA  390

seq1  AGTCACTGTGGGCGGCAGTGGAAGTCAGTCAGGTCTGACCCAGATTCAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTGTGGGCGGCAGTGGAAGTCAGTCAGGTCTGACCCAGATTCAGG  440

seq1  AAGAGAATAAATCCTGGCCTAGACAGAGACACTACCTGCAGCTGAGCACC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAATAAATCCTGGCCTAGACAGAGACACTACCTGCAGCTGAGCACC  490

seq1  AGATAAAGCTTTGCAAGACATAGACAAAGAAACCAAGGTGGACATGAACC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAGCTTTGCAAGACATAGACAAAGAAACCAAGGTGGACATGAACC  540

seq1  TAGCTTGTATCTATCTCTCTGTTAAAGAAACTATCCAAAACAGTTACTAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTGTATCTATCTCTCTGTTAAAGAAACTATCCAAAACAGTTACTAG  590

seq1  AAAATGGCCAGACAACCGTGTTTGTAATGATGAAGCAAGTTATCATTTGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGCCAGACAACCGTGTTTGTAATGATGAAGCAAGTTATCATTTGC  640

seq1  AAATAAATTCTTTGTAATTAAGTCCTGTGCTCTTTATAAAGGGAACTGAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATTCTTTGTAATTAAGTCCTGTGCTCTTTATAAAGGGAACTGAG  690

seq1  TGGGCGAGCTTAAAAAAAAAAAAAAAAACAAAACAAAAAAAAAAAAAAAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCGAGCTTAAAAAAAAAAAAAAAAACAAAACAAAAAAAAAAAAAAAC  740

seq1  ACCGCATTCTTGGGCCATGGGAAACACACACAAATGCTTTTTTACTAAGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCATTCTTGGGCCATGGGAAACACACACAAATGCTTTTTTACTAAGC  790

seq1  TCAAGATTTTAAAGTTTATAGTTTGCTTCCTCAGCCTCGTGGGTCTCTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATTTTAAAGTTTATAGTTTGCTTCCTCAGCCTCGTGGGTCTCTTT  840

seq1  GGCCCCTCCCACTGCACAGAAGGGATGAGCGGAGTGCCTTAGCTAAAAAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCTCCCACTGCACAGAAGGGATGAGCGGAGTGCCTTAGCTAAAAAG  890

seq1  TTATCATGACTGAATAGCTATCCACTTGTTCCCCAAAGTTATAAAGCAGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATGACTGAATAGCTATCCACTTGTTCCCCAAAGTTATAAAGCAGT  940

seq1  TCTATGGGAAAGACTAAGCTATAATTTTATTTTCTATTAACTGTAAAGTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGGGAAAGACTAAGCTATAATTTTATTTTCTATTAACTGTAAAGTT  990

seq1  CTATGAACTGCCCTTCCCTGAAATGTATTCAAAAATAAAGTACGATAAAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAACTGCCCTTCCCTGAAATGTATTCAAAAATAAAGTACGATAAAG  1040

seq1  TTTGCAGAGGCCATGTGTAGTGACAGTGACACTAACACCTTCAGAGTGAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGAGGCCATGTGTAGTGACAGTGACACTAACACCTTCAGAGTGAA  1090

seq1  TTC  1100
      |||
seq2  TTC  1093

seq1: chr17_44712051_44713273
seq2: B6Ng01-070E03.g_66_1281

seq1  GAATTCTTAAGGAGAGCAAGGGAAATTAAAAATAAGCAACAACCCAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAGGAGAGCAAGGGAAATTAAAAATAAGCAACAACCCAGAAT  50

seq1  ACTCAGAAAAAGTACCTTTCTAAGAAAGGAGAAGGAATGAAAGACTGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAAAAAGTACCTTTCTAAGAAAGGAGAAGGAATGAAAGACTGAAT  100

seq1  TTGTTCGTTTTACAAAGAAAATGACCAAGGAAGGTAGACCTGAAATGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCGTTTTACAAAGAAAATGACCAAGGAAGGTAGACCTGAAATGTAA  150

seq1  ATAAAGCAGTGGGCAGAGGCAAAGCAGCATCTGGAGGAAGCCAAACAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCAGTGGGCAGAGGCAAAGCAGCATCTGGAGGAAGCCAAACAGTA  200

seq1  GCTGTGCCTAGCTTTAACTATATTAGTATATTACAGCCTTATTAATTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCCTAGCTTTAACTATATTAGTATATTACAGCCTTATTAATTAGC  250

seq1  TAAGGAATTAGTTAAGGAAATTAATTAATTAAGAAATTAAATATATACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAATTAGTTAAGGAAATTAATTAATTAAGAAATTAAATATATACAT  300

seq1  ATATATTAAATTATATCCTAATCATAATGGTATAGGAGTTATTTTATTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTAAATTATATCCTAATCATAATGGTATAGGAGTTATTTTATTGA  350

seq1  TGATAGTAACTAAAATCTAAAGACTAACTCACCTAATACTAAAATGCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTAACTAAAATCTAAAGACTAACTCACCTAATACTAAAATGCAAA  400

seq1  GAAGCAATCTTGTCTTTTGAGCACACACACACACACACACACACACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAATCTTGTCTTTTGAGCACACACACACACACACACACACACACAC  450

seq1  ACACACACACAGGTACACGCTTGGCTCCTCCTCTGTGTGGGAGTGTGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACAGGTACACGCTTGGCTCCTCCTCTGTGTGGGAGTGTGTCT  500

seq1  ACATGAGTGCAGATTCCTGCAATGCCAGAAAATGTCCACGATCCTCCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGTGCAGATTCCTGCAATGCCAGAAAATGTCCACGATCCTCCAGA  550

seq1  GCTGGAGCTGCTCTTGGGATGTGCTTAACGAGGCTGCTGGAAACTGAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGCTGCTCTTGGGATGTGCTTAACGAGGCTGCTGGAAACTGAACT  600

seq1  CCAGATCTCTGCAAGAGCATCAAGCCCCAGCCTGTGTATTTTACAACCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCTCTGCAAGAGCATCAAGCCCCAGCCTGTGTATTTTACAACCAA  650

seq1  GAGAAAATCCAAGTTAGTAGAAAACCGTTACATAAAACTTACAGATGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAATCCAAGTTAGTAGAAAACCGTTACATAAAACTTACAGATGGGC  700

seq1  TATCACAATCAAGAAAGCTGTGCTTCTTGCATCAGTCAAGAAAACATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAATCAAGAAAGCTGTGCTTCTTGCATCAGTCAAGAAAACATTCA  750

seq1  AGCTTTCATTTTAATTATGCTAAACTAAACATAAAAGATTAAAATTGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCATTTTAATTATGCTAAACTAAACATAAAAGATTAAAATTGTAG  800

seq1  GTGACCAGTAAAAGAAACTAGAACTCATGAGGTAGAGGGAATTAGAACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCAGTAAAAGAAACTAGAACTCATGAGGTAGAGGGAATTAGAACAG  850

seq1  AAGGTGAAGTGAAAGAACATAACAACTAATGCAGACCAAGAATAAAGGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGAAGTGAAAGAACATAACAACTAATGCAGACCAAGAATAAAGGGA  900

seq1  AAGGACAGGAAAGGGATCGTTAGCATTAAAAATGCAAAGTGCTGAAAAAT  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAGGACAGGAAAGGGATCGTTAGCATTAAAAATGCAAAGTGCTG-AAAAT  949

seq1  GAAACCAAATTGTTTGGTCAGGACACATAATGTAAGCAAACCTCCAATTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCAAATTGTTTGGTCAGGACACATAATGTAAGCAAACCTCCAATTA  999

seq1  AACAACAAAGACATCGAGACGTTAGCTTTTCTTGGAAAGAATAGTTGGTC  1050
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AACAACAAAGACATCGAGACGTTAGCTTTTCTTGG-AAGAATAGTTGGTC  1048

seq1  CAAGTTGAGAAG-TCTAAGTGAGCCTTCGAAGGTAACCCAAGCACTGCCA  1099
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAAGTTGAGAAGTTCTAAGTGAGCCTTCGAAGGTAACCCAAGCACTGCCA  1098

seq1  AGTCACACGGGGCTTGAG-AAGCTTAGCTGAGGGATGGCAAGGTGGCTCA  1148
      ||||||||||||| |||| ||||||||||||  |||| ||||||| ||||
seq2  AGTCACACGGGGCCTGAGAAAGCTTAGCTGA--GATGCCAAGGTGCCTCA  1146

seq1  GCAGGGAAAGGCCAAAGAGAGAGCCAACTCCAGAGAGTTGTTCTC-TAGC  1197
       || |||||||||||  ||| ||||| |||||||||| ||||||| ||||
seq2  CCAAGGAAAGGCCAA--AGAAAGCCACCTCCAGAGAGGTGTTCTCTTAGC  1194

seq1  CTCCACAGAAAGGCTGTGGCACATGT  1223
      | |  ||||||||  ||||| |||||
seq2  C-CTCCAGAAAGG--GTGGC-CATGT  1216