BAC Information

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BAC

Clone NameB6Ng01-071C01
Chromosome17 (Build37)
Map Location 89,802,241 - 89,802,956
singlet/doubletsinglet
Overlap genenone
Upstream geneFoxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr, LOC100043904
Downstream geneLOC100043906, Nrxn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071C01.bB6Ng01-071C01.g
ACCDH888913DH888914
length987998
definitionDH888913|Mus musculus domesticus DNA, BAC clone: B6Ng01-071C01, 5' end.DH888914|Mus musculus domesticus DNA, BAC clone: B6Ng01-071C01, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgggtcgtatatttatattatcttactaaggggattaatagttc
tctcattctcttaggatgttctcgggtgagtcagatttcctgtgggtagt
ctcctggcccagtgactgtcaggcctattgggatgaagtaggactcaaca
aagccttgaactacattttttcataagatattttaaatcttaaggagggg
taattgtaaaacttccatttctctttctttaatttagggaaattttcttt
tataattttgttgacaatattccctggccctttaagttctgaattttcat
tctcttctatacctattattcttaggtttggtctcattgtatcctggatt
tcctggatgttttgggttaggagctttttgctttttgcattttctttgac
tgttgtgtcaatgctttctatggtacttctgcacctgagattctctcttc
tatctcttgtattctgttggtgatgcttgcatctatgactcctgatctct
ttcctaggttttctttctccagagttgtctccttttgtgatttctttcct
gtttctatttgcattttttgatcctgattggttttgttctattcctttac
ctgtttggttgtatttttctataattgtttaagtgatttttgtgtttcct
ctttaaggacttctacctgtttatgagtattctcccatatttctttaagg
gagttatttatgtcgttcttgaagtcctctatcatcatcatgtgatgtga
ttttaaatcagtcttgcttttttggtgtgttgggttatccaatgcttgtt
tttgtcagagaattgggttctgatgatgccacatagacttggtttctgtt
gtttatgttcttgcccttgcctcttgacatctggttatctatggtgttag
ctggtcttgctgtctccgactaaggcttatccctcctgaaagcctgtgtg
tcagtactcctgagagaccagttctctcttggaggaa
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctagccaaatggatggacctggagggcatcatcctgagtgaggtaac
gcattcacaaagaaactcacacaatatgtattcactgataagtggatatt
agccccaaacctaggatacccaagatataagatataatttgctaaacaca
tgaaactcaaggagaatgaagactgaagtgtggacactatccccctcctt
agatttgggaacaaaacacccatggaaggagttacagagacggagtttgg
agctgagatgaaaggatggaccatgtagagactgccatagccagggatcc
accccataatcagcatccaaacgctgacaccattgcatacactagcaaga
ttttattgaaaggacgcagatgtagctgtctcttgtgagactatgccggg
gcccagcaaacacagaagtggatgctcacagtcagctaatggatggatca
tagggctcccaatggaggagctagagaaagtagccaaggagctaaaggga
tctgcaaccctataggtggaacaacattatgagctaaccagtaccccgga
gctcttgactctagctgcatatatatcaaaagatggcctagtcggccatc
actggaaagagaggcccattggacttgcaaactttatatgcccagtacag
ggaataccagggccaaaaagggggagtgggtgggccaggggagtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_89802241_89802956
seq2: B6Ng01-071C01.b_45_760

seq1  GAATTCTGGGTCGTATATTTATATTATCTTACTAAGGGGATTAATAGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGTCGTATATTTATATTATCTTACTAAGGGGATTAATAGTTC  50

seq1  TCTCATTCTCTTAGGATGTTCTCGGGTGAGTCAGATTTCCTGTGGGTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTCTCTTAGGATGTTCTCGGGTGAGTCAGATTTCCTGTGGGTAGT  100

seq1  CTCCTGGCCCAGTGACTGTCAGGCCTATTGGGATGAAGTAGGACTCAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGCCCAGTGACTGTCAGGCCTATTGGGATGAAGTAGGACTCAACA  150

seq1  AAGCCTTGAACTACATTTTTTCATAAGATATTTTAAATCTTAAGGAGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTGAACTACATTTTTTCATAAGATATTTTAAATCTTAAGGAGGGG  200

seq1  TAATTGTAAAACTTCCATTTCTCTTTCTTTAATTTAGGGAAATTTTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTAAAACTTCCATTTCTCTTTCTTTAATTTAGGGAAATTTTCTTT  250

seq1  TATAATTTTGTTGACAATATTCCCTGGCCCTTTAAGTTCTGAATTTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTTGTTGACAATATTCCCTGGCCCTTTAAGTTCTGAATTTTCAT  300

seq1  TCTCTTCTATACCTATTATTCTTAGGTTTGGTCTCATTGTATCCTGGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTATACCTATTATTCTTAGGTTTGGTCTCATTGTATCCTGGATT  350

seq1  TCCTGGATGTTTTGGGTTAGGAGCTTTTTGCTTTTTGCATTTTCTTTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGATGTTTTGGGTTAGGAGCTTTTTGCTTTTTGCATTTTCTTTGAC  400

seq1  TGTTGTGTCAATGCTTTCTATGGTACTTCTGCACCTGAGATTCTCTCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGTCAATGCTTTCTATGGTACTTCTGCACCTGAGATTCTCTCTTC  450

seq1  TATCTCTTGTATTCTGTTGGTGATGCTTGCATCTATGACTCCTGATCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTTGTATTCTGTTGGTGATGCTTGCATCTATGACTCCTGATCTCT  500

seq1  TTCCTAGGTTTTCTTTCTCCAGAGTTGTCTCCTTTTGTGATTTCTTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGGTTTTCTTTCTCCAGAGTTGTCTCCTTTTGTGATTTCTTTCCT  550

seq1  GTTTCTATTTGCATTTTTTGATCCTGATTGGTTTTGTTCTATTCCTTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTATTTGCATTTTTTGATCCTGATTGGTTTTGTTCTATTCCTTTAC  600

seq1  CTGTTTGGTTGTATTTTTCTATAATTGTTTAAGTGATTTTTGTGTTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGGTTGTATTTTTCTATAATTGTTTAAGTGATTTTTGTGTTTCCT  650

seq1  CTTTAAGGACTTCTACCTGTTTATGAGTATTCTCCCATATTTCTTTAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGGACTTCTACCTGTTTATGAGTATTCTCCCATATTTCTTTAAGG  700

seq1  GAGTTATTTATGTCGT  716
      ||||||||||||||||
seq2  GAGTTATTTATGTCGT  716