BAC Information

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BAC

Clone NameB6Ng01-072H18
Chromosome17 (Build37)
Map Location 16,240,577 - 16,293,088
singlet/doubletdoublet
Overlap genenone
Upstream geneC330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
Downstream geneLOC100041383, LOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101, Zfp97
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072H18.bB6Ng01-072H18.g
ACCDH889892DH889893
length1,134941
definitionDH889892|Mus musculus domesticus DNA, BAC clone: B6Ng01-072H18, 5' end.DH889893|Mus musculus domesticus DNA, BAC clone: B6Ng01-072H18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,240,577 - 16,241,720)(16,292,546 - 16,293,088)
sequence
gaattctaagagccactgggagttttctgcgagattatgttttctagtaa
catcagaagctacacccgtataaagtcttattaatatgattgcctaaatg
tgagctgaacaaagacgatagcaaatagatatgccaaaatagaccaggag
actcccatgagaccccagtcccacacaaagaactataggcaatcaagaaa
tgctgaaaatcagaaaagtagccttcttcacgtgacagcaccttagcaga
ttattcaataccagatagtcagcccaaatacatacctgcaagtatacagg
ctaaacatgttatatttaggaatatatgtgtattcatatatgcatgtaac
aacaatgaaaaaaggctatacatctgagaggaactaagggatgaaggatt
gtatggaagggcttgaagggaggaaaggggaaggaagaaatgctgtaatt
ataatccctagaataaaataacaaaagtgattccttaatgttgtctcatg
tttctctctcttattattataatgcttttctcctacatttcataaatttg
tttaacagtaccatatttcttataaattatttgttaaatatttgtttata
atgtgtttctttacattttgaatcttgataacaatattgtaaagttgtat
ttactacatttctctgctttgggtttttgtttattttccataaacctaaa
gaggttagtgtactcagtgcatatttttgcagactattcatctgagtttt
gtaacattgcatttgcatcacatcaggaggtacatgatgccttattgcca
ttctctttgggatattaagattgataagtagattcagctggtgttagcct
cgtcatttattgtaaaatttctcaagagctcctgatctaattgttcagaa
accattagaaatctttgcccatgggttactttaatttatcattgcattac
ttactgttcatttattataaatatttgtgcattttcaaacacagtactaa
acatgtaatgcataaaaacagaaaatggctctgcagacatcttacttgtg
tctactagcccagatcagagatatgggctcatgtagaactaaattctttt
tataacgatgcctaaattagaagactagaactaa
gaattctctgccgtgtttacatagtcaggctcatcaaatgtaaaatgcca
aaatgcatcctaaaaatttatgtttatacccataggtttgtgctgttctt
gactttggtaaaaaaaaaaaaaactctttttgctatggatagtagtagtt
aatgcagagactcattactggtcaaggtactgagtataaatagctatgaa
tgcttagctacaaagggatcctctttattaaccttccgttagccaaagct
taaggaacctcagagttcccagcaaaggtattggaagaatgtaagagctg
acagatggaaaagagatcgtgggaaaagacatgacatcagctcacagcag
ctgtggtcctctgtccaagacctgcatgaactcaagccaaccaaaattcc
aacattgctaaagggcaagcctccaagaccccaatcctatcagaggagtt
attggcaattgaataccaccaaagggtggataagtcactctattttggag
atttaagtgacggtaagttacttgtgccttgttacttatgagtagtcaca
taccaatgtacatatggacagaactaaatatacctggggggtatcaatga
caaaaataaataaaatgaggacatgaagctggagaaataacagtagggat
gtaagggaagttggaagaaggaagtgataaattaatatgagcaatatata
ttgcctggatgtatggaatattgaagggatacaagtgcacacaggagcaa
tggaaggatattgggcatatggtactgggaaaatattcttgcgttgaaat
tagagaaaaaacaaaacctgggtgaactgctagctgtgtgaactttgacc
agctgcttactcccagagccctccttgatcttgtttgtaaaataagagca
atgtctgaaattatataatttgaaataaggaataaacatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_16240577_16241720
seq2: B6Ng01-072H18.b_45_1178

seq1  GAATTCTAAGAGCCACTGGGAGTTTTCTGCGAGATTATGTTTTCTAGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGAGCCACTGGGAGTTTTCTGCGAGATTATGTTTTCTAGTAA  50

seq1  CATCAGAAGCTACACCCGTATAAAGTCTTATTAATATGATTGCCTAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGAAGCTACACCCGTATAAAGTCTTATTAATATGATTGCCTAAATG  100

seq1  TGAGCTGAACAAAGACGATAGCAAATAGATATGCCAAAATAGACCAGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGAACAAAGACGATAGCAAATAGATATGCCAAAATAGACCAGGAG  150

seq1  ACTCCCATGAGACCCCAGTCCCACACAAAGAACTATAGGCAATCAAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCATGAGACCCCAGTCCCACACAAAGAACTATAGGCAATCAAGAAA  200

seq1  TGCTGAAAATCAGAAAAGTAGCCTTCTTCACGTGACAGCACCTTAGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAAAATCAGAAAAGTAGCCTTCTTCACGTGACAGCACCTTAGCAGA  250

seq1  TTATTCAATACCAGATAGTCAGCCCAAATACATACCTGCAAGTATACAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAATACCAGATAGTCAGCCCAAATACATACCTGCAAGTATACAGG  300

seq1  CTAAACATGTTATATTTAGGAATATATGTGTATTCATATATGCATGTAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACATGTTATATTTAGGAATATATGTGTATTCATATATGCATGTAAC  350

seq1  AACAATGAAAAAAGGCTATACATCTGAGAGGAACTAAGGGATGAAGGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGAAAAAAGGCTATACATCTGAGAGGAACTAAGGGATGAAGGATT  400

seq1  GTATGGAAGGGCTTGAAGGGAGGAAAGGGGAAGGAAGAAATGCTGTAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGAAGGGCTTGAAGGGAGGAAAGGGGAAGGAAGAAATGCTGTAATT  450

seq1  ATAATCCCTAGAATAAAATAACAAAAGTGATTCCTTAATGTTGTCTCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCCTAGAATAAAATAACAAAAGTGATTCCTTAATGTTGTCTCATG  500

seq1  TTTCTCTCTCTTATTATTATAATGCTTTTCTCCTACATTTCATAAATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTCTCTTATTATTATAATGCTTTTCTCCTACATTTCATAAATTTG  550

seq1  TTTAACAGTACCATATTTCTTATAAATTATTTGTTAAATATTTGTTTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACAGTACCATATTTCTTATAAATTATTTGTTAAATATTTGTTTATA  600

seq1  ATGTGTTTCTTTACATTTTGAATCTTGATAACAATATTGTAAAGTTGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTTCTTTACATTTTGAATCTTGATAACAATATTGTAAAGTTGTAT  650

seq1  TTACTACATTTCTCTGCTTTGGGTTTTTGTTTATTTTCCATAAACCTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTACATTTCTCTGCTTTGGGTTTTTGTTTATTTTCCATAAACCTAAA  700

seq1  GAGGTTAGTGTACTCAGTGCATATTTTTGCAGACTATTCATCTGAGTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTAGTGTACTCAGTGCATATTTTTGCAGACTATTCATCTGAGTTTT  750

seq1  GTAACATTGCATTTGCATCACATCAGGAGGTACATGATGCCTTATTGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACATTGCATTTGCATCACATCAGGAGGTACATGATGCCTTATTGCCA  800

seq1  TTCTCTTTGGGATATTAAGATTGATAAGTAGATTCAGCTGGTGTTAGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTGGGATATTAAGATTGATAAGTAGATTCAGCTGGTGTTAGCCT  850

seq1  CGTCATTTATTGTAAAATTTCTCAAGAGCTCCTGATCTAATTGTTCAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCATTTATTGTAAAATTTCTCAAGAGCTCCTGATCTAATTGTTCAGAA  900

seq1  ACCATTAGAAATCTTTGCCCATGGGTTACTTTAATTTATCATTGCATTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTAGAAATCTTTGCCCATGGGTTACTTTAATTTATCATTGCATTAC  950

seq1  TTACTGTTCATTTATTTATAAATATTTGTGCATTTTCAAACACAGTACTA  1000
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTACTGTTCATTTA-TTATAAATATTTGTGCATTTTCAAACACAGTACTA  999

seq1  AACATGTAATGCATAAAAAACAGGAAAATGGCTCCTGCAGACATCTTACT  1050
      |||||||||||||| ||||||| |||||||||| ||||||||||||||||
seq2  AACATGTAATGCAT-AAAAACA-GAAAATGGCT-CTGCAGACATCTTACT  1046

seq1  TGTGTCTACTAGCCCAGATCAGAGATTATGGGCTCATGTAGAACTAAATT  1100
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGTGTCTACTAGCCCAGATCAGAGA-TATGGGCTCATGTAGAACTAAATT  1095

seq1  TCTTTTATAAACGGATGCCCTAAATTTAGAAGACTAAGAACTAA  1144
        ||||||||   |||| |||||| |||||||||| ||||||||
seq2  CTTTTTATAA--CGATG-CCTAAA-TTAGAAGACT-AGAACTAA  1134

seq1: chr17_16292546_16293088
seq2: B6Ng01-072H18.g_68_610 (reverse)

seq1  ACTCATAAGTAACAAGGCACAAGTAACTTACCGTCACTTAAATCTCCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATAAGTAACAAGGCACAAGTAACTTACCGTCACTTAAATCTCCAAA  50

seq1  ATAGAGTGACTTATCCACCCTTTGGTGGTATTCAATTGCCAATAACTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTGACTTATCCACCCTTTGGTGGTATTCAATTGCCAATAACTCCT  100

seq1  CTGATAGGATTGGGGTCTTGGAGGCTTGCCCTTTAGCAATGTTGGAATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGGATTGGGGTCTTGGAGGCTTGCCCTTTAGCAATGTTGGAATTT  150

seq1  TGGTTGGCTTGAGTTCATGCAGGTCTTGGACAGAGGACCACAGCTGCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGCTTGAGTTCATGCAGGTCTTGGACAGAGGACCACAGCTGCTGT  200

seq1  GAGCTGATGTCATGTCTTTTCCCACGATCTCTTTTCCATCTGTCAGCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGATGTCATGTCTTTTCCCACGATCTCTTTTCCATCTGTCAGCTCT  250

seq1  TACATTCTTCCAATACCTTTGCTGGGAACTCTGAGGTTCCTTAAGCTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCTTCCAATACCTTTGCTGGGAACTCTGAGGTTCCTTAAGCTTTG  300

seq1  GCTAACGGAAGGTTAATAAAGAGGATCCCTTTGTAGCTAAGCATTCATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACGGAAGGTTAATAAAGAGGATCCCTTTGTAGCTAAGCATTCATAG  350

seq1  CTATTTATACTCAGTACCTTGACCAGTAATGAGTCTCTGCATTAACTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTATACTCAGTACCTTGACCAGTAATGAGTCTCTGCATTAACTACT  400

seq1  ACTATCCATAGCAAAAAGAGTTTTTTTTTTTTTTACCAAAGTCAAGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCCATAGCAAAAAGAGTTTTTTTTTTTTTTACCAAAGTCAAGAACA  450

seq1  GCACAAACCTATGGGTATAAACATAAATTTTTAGGATGCATTTTGGCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAACCTATGGGTATAAACATAAATTTTTAGGATGCATTTTGGCATT  500

seq1  TTACATTTGATGAGCCTGACTATGTAAACACGGCAGAGAATTC  543
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTGATGAGCCTGACTATGTAAACACGGCAGAGAATTC  543