BAC Information

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BAC

Clone NameB6Ng01-073B21
Chromosome17 (Build37)
Map Location 54,362,082 - 54,490,911
singlet/doubletdoublet
Overlap geneSlc5a7, LOC668529
Upstream geneEG629036, LOC668512, Efhb, LOC668513, Rab5a, 4921523A10Rik, Pcaf, EG628822, Sgol1, EG629065, 4932415M13Rik, Ck-ps1, EG637939, Sult1c2, LOC100043826, LOC100043471, EG668523, LOC629121, Gm324, Sult1c1, LOC100043829, EG435531
Downstream gene1700025K24Rik, Trp53-ps, LOC240117, EG629178, LOC100043833, LOC100043485
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073B21.bB6Ng01-073B21.g
ACCDH890342DH890343
length1,1681,091
definitionDH890342|Mus musculus domesticus DNA, BAC clone: B6Ng01-073B21, 5' end.DH890343|Mus musculus domesticus DNA, BAC clone: B6Ng01-073B21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,362,082 - 54,363,252)(54,489,808 - 54,490,911)
sequence
gaattctttattcctgaaatgagaaagcttatccttacctgtggagaatc
ctggtttctagaaccatgaccaaaagcaacttgagaaggagtgggtttat
ttggcttacaggttaaagtccattatgggtaaaagccaaggtaggaactc
aaagaaggagcttgaagcacgaattatgaagggacactgcttactggttt
acttcttccagcttgctcatctaccttttttttttttttttttaatacag
ctcaggtttacttgcctaaggatgtacagacaacagtggactcagacctc
tgatatctttcagaaaatgagaacacggacacatgacaatatgatatgtg
ctatgcttcagttgaggtttttcacttcctaggtaagtctagtttgtgtt
acattgaagctggttaggacaatgctttcatctcatttccattttcactt
ttagtgcttttgttttgtgttctattttactctccattccattcagttct
gttgtgatgttaccccgtgtttctcttctagttatcatgcagagctcatc
cacatgggcactcagcattgtgtgacagatcctatccactgagaacaaca
aagacaggaatttttcacccagggattaaagcctggaggaggaaattatc
tatcacctgcatctgccattagaataacaaatgtcatgagagtattttct
taagactgggcttgagaaatatcatcacaccattggaagtcttacaactt
gatgtgaacacagagggctttcggtagaaatatcactgtaggaagctttg
cagacaccttcgaacccagtggaagtagaagattcccatgtctgtgttct
ctattcccagcaccagcatggatttctccaagctttgtagggagaactct
gaatgtttatttctctgatgaatccttaatgaagtggcagccatctgggg
gagaccaggcttagttccccctgagagggatagtcaagccagcttaagag
gtagctgatgtcaaggctattaatgcaaatggaaattataatttcctcat
ccagatctggcttccaaacaggctaatcatttgggcccctgtttacagaa
aacaacgggctatcagccagaaacttttaagtttctgtggcttctctgtg
tgacgattttagcctctg
gaattctttttaaagtataaatactaggttatgcaatctctggaagaata
aggaacgtatttaagcatggacttggctcactgatatattatccagtatg
tgaggtatatagagactggttccactcctaataagctttgtggtagaatg
ccattttacagcctgtaaaatcatcactctggacagcagtaaataaatgg
tatttagaggatttcagagagatatgagtgaagggaagcagatacagcaa
aatactggcaagtgcttttaatggacagaaggagaaggcaggccaaggaa
aaatttttttaaactgttgttagtaatttaatctttgggctagaccaaaa
aaacaaaaacaaaaacaccacctttatagttttcttccttagatttgaca
tttgtgtccaagttgtttttaagggagctatgtaacagtaatcacaaagt
ttttagctgatttttttctgaaacagttttcctatgctgacctctactgg
gtaatggaaagaaagcagaacaaacgcacaggcaatcagtttaaactgga
agcaagcaaaaacaaaggactccaggacagacagacaggcaggcaggcag
gcagacacatgcacacatacatatggctgttgagtttttcaaaaacaaat
aaatggcctttactattttgctattatggcttcagtctagtggcgaagtc
acaaatagaagtccagatgcaagcacaaggctcctgaaatgcatagaagg
gatatgaatgtggaaacacgggtggagtttccttccacagccaggctctc
aaaagctgacattctgcaccaatatttctagaaagtccaaaggcataaat
aaaacttaaattatcaacagatgcctctcttctgaagaacagataaagaa
aatgtctacatctacacatagagtatactcagtggttagataaatgacat
catgatattgcagtcaaatagatagaactagaaaaatttcatcctgaagg
agtacccttaggcatttaaggcaaatatatcatgtattcactatagtgaa
tattatctgtagtaaatgataacaagctacagtgtaagact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_54362082_54363252
seq2: B6Ng01-073B21.b_40_1207

seq1  GAATTCTTTATTCCTGAAATGAGAAAGCTTATCCTTACCTGTGGAGAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATTCCTGAAATGAGAAAGCTTATCCTTACCTGTGGAGAATC  50

seq1  CTGGTTTCTAGAACCATGACCAAAAGCAACTTGAGAAGGAGTGGGTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTCTAGAACCATGACCAAAAGCAACTTGAGAAGGAGTGGGTTTAT  100

seq1  TTGGCTTACAGGTTAAAGTCCATTATGGGTAAAAGCCAAGGTAGGAACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTACAGGTTAAAGTCCATTATGGGTAAAAGCCAAGGTAGGAACTC  150

seq1  AAAGAAGGAGCTTGAAGCACGAATTATGAAGGGACACTGCTTACTGGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGGAGCTTGAAGCACGAATTATGAAGGGACACTGCTTACTGGTTT  200

seq1  ACTTCTTCCAGCTTGCTCATCTACCTTTTTTTTTTTTTTTTTTAATACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTCCAGCTTGCTCATCTACCTTTTTTTTTTTTTTTTTTAATACAG  250

seq1  CTCAGGTTTACTTGCCTAAGGATGTACAGACAACAGTGGACTCAGACCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTTTACTTGCCTAAGGATGTACAGACAACAGTGGACTCAGACCTC  300

seq1  TGATATCTTTCAGAAAATGAGAACACGGACACATGACAATATGATATGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATCTTTCAGAAAATGAGAACACGGACACATGACAATATGATATGTG  350

seq1  CTATGCTTCAGTTGAGGTTTTTCACTTCCTAGGTAAGTCTAGTTTGTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCTTCAGTTGAGGTTTTTCACTTCCTAGGTAAGTCTAGTTTGTGTT  400

seq1  ACATTGAAGCTGGTTAGGACAATGCTTTCATCTCATTTCCATTTTCACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGAAGCTGGTTAGGACAATGCTTTCATCTCATTTCCATTTTCACTT  450

seq1  TTAGTGCTTTTGTTTTGTGTTCTATTTTACTCTCCATTCCATTCAGTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGCTTTTGTTTTGTGTTCTATTTTACTCTCCATTCCATTCAGTTCT  500

seq1  GTTGTGATGTTACCCCGTGTTTCTCTTCTAGTTATCATGCAGAGCTCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGATGTTACCCCGTGTTTCTCTTCTAGTTATCATGCAGAGCTCATC  550

seq1  CACATGGGCACTCAGCATTGTGTGACAGATCCTATCCACTGAGAACAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGGCACTCAGCATTGTGTGACAGATCCTATCCACTGAGAACAACA  600

seq1  AAGACAGGAATTTTTCACCCAGGGATTAAAGCCTGGAGGAGGAAATTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGGAATTTTTCACCCAGGGATTAAAGCCTGGAGGAGGAAATTATC  650

seq1  TATCACCTGCATCTGCCATTAGAATAACAAATGTCATGAGAGTATTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACCTGCATCTGCCATTAGAATAACAAATGTCATGAGAGTATTTTCT  700

seq1  TAAGACTGGGCTTGAGAAATATCATCACACCATTGGAAGTCTTACAACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTGGGCTTGAGAAATATCATCACACCATTGGAAGTCTTACAACTT  750

seq1  GATGTGAACACAGAGGGCTTTCGGTAGAAATATCACTGTAGGAAGCTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGAACACAGAGGGCTTTCGGTAGAAATATCACTGTAGGAAGCTTTG  800

seq1  CAGACACCTTCGAACCCAGTGGAAGTAGAAGATTCCCATGTCTGTGTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACCTTCGAACCCAGTGGAAGTAGAAGATTCCCATGTCTGTGTTCT  850

seq1  CTATTCCCAGCACCAGCATGGATTTCTCCAAAGCTTTGTAGGGCAGAACT  900
      ||||||||||||||||||||||||||||| ||||||||||||| ||||||
seq2  CTATTCCCAGCACCAGCATGGATTTCTCC-AAGCTTTGTAGGG-AGAACT  898

seq1  CTGAATGTTTATTTCTCTGATGAATCCTTAATGAAAGTGGCCAGCCATCC  950
      ||||||||||||||||||||||||||||||||| |||||| |||||||| 
seq2  CTGAATGTTTATTTCTCTGATGAATCCTTAATG-AAGTGG-CAGCCATCT  946

seq1  TGGGGAGAACAAGCCTTAGTTCCCACTGAGAAGGATAG-CAAG-CAGCAT  998
       |||||| || || |||||||||| |||||| |||||| |||| |||| |
seq2  GGGGGAG-ACCAGGCTTAGTTCCCCCTGAGAGGGATAGTCAAGCCAGCTT  995

seq1  AAGA-GTAGCTGATGTCAAAGGCTATTAATGCAAATGAAAATTATAA-TT  1046
      |||| |||||||||||| ||||||||||||||||||| ||||||||| ||
seq2  AAGAGGTAGCTGATGTC-AAGGCTATTAATGCAAATGGAAATTATAATTT  1044

seq1  CCTCATCAAGATCT-GCTCCCAGACAGGCTAATCATTGTGCCACCTGTTT  1095
      ||||||| |||||| ||| ||| ||||||||||||||  | | |||||||
seq2  CCTCATCCAGATCTGGCTTCCAAACAGGCTAATCATTTGGGCCCCTGTTT  1094

seq1  ACAGAAACACACTGCTAATCAGTCAGTAAAATCTTTTAAGTTTCTGT-GC  1144
      |||||||   || |   ||||| |||   || ||||||||||||||| ||
seq2  ACAGAAAACAACGGGCTATCAGCCAG---AAACTTTTAAGTTTCTGTGGC  1141

seq1  TTCTCTGTGT-ACGATTTTTAGCCTCTG  1171
      |||||||||| |||| ||||||||||||
seq2  TTCTCTGTGTGACGA-TTTTAGCCTCTG  1168

seq1: chr17_54489808_54490911
seq2: B6Ng01-073B21.g_70_1160 (reverse)

seq1  AGTCTGTACACTGTAACTTGGTTATCATTTACTTAACAGATAATATTCAC  50
      ||||| ||||||||| ||| |||||||||||||  |||||||||||||||
seq2  AGTCT-TACACTGTAGCTT-GTTATCATTTACT--ACAGATAATATTCAC  46

seq1  TTATAAGTGAATACATGATATATTTGCCTTTAAATGCCT-AGGGTACCTC  99
       ||| ||||||||||||||||||||||| |||||||||| |||||| |||
seq2  -TAT-AGTGAATACATGATATATTTGCC-TTAAATGCCTAAGGGTA-CTC  92

seq1  CTTCAGGATGATATTTTTCTAGTTCTATCTATTTGACTGCAAATATCATG  149
      ||||||||||| |||||||||||||||||||||||||||| |||||||||
seq2  CTTCAGGATGAAATTTTTCTAGTTCTATCTATTTGACTGC-AATATCATG  141

seq1  ATGTCATTTATCTTAACCACTGAGTAATACTCTATTGTGTAAATGTAGAC  199
      |||||||||||| |||||||||||| |||||||| |||||| ||||||||
seq2  ATGTCATTTATC-TAACCACTGAGT-ATACTCTA-TGTGTAGATGTAGAC  188

seq1  ATTTTCTTTATCTGTTCTTCAGAAGAGAGGCATCTGTTGATAATTTAAGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTTATCTGTTCTTCAGAAGAGAGGCATCTGTTGATAATTTAAGT  238

seq1  TTTATTTATGCCTTTGGGACTTTCTAGAAATATTGGTGCAGAATGTCAGC  299
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTATTTATGCCTTT-GGACTTTCTAGAAATATTGGTGCAGAATGTCAGC  287

seq1  TTTTGAGAGCCTGGCTTGTGGAAGGAAACTCCACCCGTGTTTCCACATTC  349
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTTGAGAGCCTGGC-TGTGGAAGGAAACTCCACCCGTGTTTCCACATTC  336

seq1  ATATCCCTTCTATGCATTTCAGGAGCCTTGTGCTTGCATCTGGACTTCTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCCTTCTATGCATTTCAGGAGCCTTGTGCTTGCATCTGGACTTCTA  386

seq1  TTTGTGACTTCGCCACTAGACTGAAGCCATAATAGCAAAATAGTAAAGGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGACTTCGCCACTAGACTGAAGCCATAATAGCAAAATAGTAAAGGC  436

seq1  CATTTATTTGTTTTTGAAAAACTCAACAGCCATATGTATGTGTGCATGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATTTGTTTTTGAAAAACTCAACAGCCATATGTATGTGTGCATGTG  486

seq1  TCTGCCTGCCTGCCTGCCTGTCTGTCTGTCCTGGAGTCCTTTGTTTTTGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTGCCTGCCTGCCTGTCTGTCTGTCCTGGAGTCCTTTGTTTTTGC  536

seq1  TTGCTTCCAGTTTAAACTGATTGCCTGTGCGTTTGTTCTGCTTTCTTTCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCCAGTTTAAACTGATTGCCTGTGCGTTTGTTCTGCTTTCTTTCC  586

seq1  ATTACCCAGTAGAGGTCAGCATAGGAAAACTGTTTCAGAAAAAAATCAGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCCAGTAGAGGTCAGCATAGGAAAACTGTTTCAGAAAAAAATCAGC  636

seq1  TAAAAACTTTGTGATTACTGTTACATAGCTCCCTTAAAAACAACTTGGAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACTTTGTGATTACTGTTACATAGCTCCCTTAAAAACAACTTGGAC  686

seq1  ACAAATGTCAAATCTAAGGAAGAAAACTATAAAGGTGGTGTTTTTGTTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGTCAAATCTAAGGAAGAAAACTATAAAGGTGGTGTTTTTGTTTT  736

seq1  TGTTTTTTTGGTCTAGCCCAAAGATTAAATTACTAACAACAGTTTAAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTTGGTCTAGCCCAAAGATTAAATTACTAACAACAGTTTAAAAA  786

seq1  AATTTTTCCTTGGCCTGCCTTCTCCTTCTGTCCATTAAAAGCACTTGCCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTCCTTGGCCTGCCTTCTCCTTCTGTCCATTAAAAGCACTTGCCA  836

seq1  GTATTTTGCTGTATCTGCTTCCCTTCACTCATATCTCTCTGAAATCCTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTGCTGTATCTGCTTCCCTTCACTCATATCTCTCTGAAATCCTCT  886

seq1  AAATACCATTTATTTACTGCTGTCCAGAGTGATGATTTTACAGGCTGTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCATTTATTTACTGCTGTCCAGAGTGATGATTTTACAGGCTGTAA  936

seq1  AATGGCATTCTACCACAAAGCTTATTAGGAGTGGAACCAGTCTCTATATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCATTCTACCACAAAGCTTATTAGGAGTGGAACCAGTCTCTATATA  986

seq1  CCTCACATACTGGATAATATATCAGTGAGCCAAGTCCATGCTTAAATACG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACATACTGGATAATATATCAGTGAGCCAAGTCCATGCTTAAATACG  1036

seq1  TTCCTTATTCTTCCAGAGATTGCATAACCTAGTATTTATACTTTAAAAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTATTCTTCCAGAGATTGCATAACCTAGTATTTATACTTTAAAAAG  1086

seq1  AATTC  1104
      |||||
seq2  AATTC  1091