BAC Information

Click to search

BAC

Clone NameB6Ng01-073F23
Chromosome17 (Build37)
Map Location 54,530,404 - 54,696,442
singlet/doubletdoublet
Overlap geneTrp53-ps, LOC240117
Upstream geneEfhb, LOC668513, Rab5a, 4921523A10Rik, Pcaf, EG628822, Sgol1, EG629065, 4932415M13Rik, Ck-ps1, EG637939, Sult1c2, LOC100043826, LOC100043471, EG668523, LOC629121, Gm324, Sult1c1, LOC100043829, EG435531, Slc5a7, LOC668529, 1700025K24Rik
Downstream geneEG629178, LOC100043833, LOC100043485, LOC677496, St6gal2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073F23.bB6Ng01-073F23.g
ACCDH890526DH890527
length1,212780
definitionDH890526|Mus musculus domesticus DNA, BAC clone: B6Ng01-073F23, 5' end.DH890527|Mus musculus domesticus DNA, BAC clone: B6Ng01-073F23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,530,404 - 54,531,621)(54,695,664 - 54,696,442)
sequence
gaattctctgaacttgagaccttgtactttccaaggatctggcaaaccag
gcccttgcttctcttctattctacatcaagtactaacatttcatgagtat
gtgtctatgtgccaaacccttaaaaaacataattacttacatgttatgtg
gaaatcaatggtctattgtttcagcaggccacaaaacaggaaaatatatt
ttaagcaggatgtattgacaaaccatgtctttgtatgtatccttctgaga
gggctgtgttctcagtatgaatggcacttattccagatttggcccaagtt
ttctgaaacatatcaaggacacttagctgtctctgtctggaaatcattac
agtttacttaacattaagaggggcaattccttatagtgacataggtagtc
aacttatgacccacttcataaggatctttctaaatattgtactgggaata
ggttctgaatgtcaatctgccaagtgttttgagtaaaatggatgactggc
taaaataacttaccttcaattagcaaaggagaaaggaaatattcaccaat
caacttgacaactagaaatgaatgtaatgtttgaaattagctgtaaagtt
cagtctataatacaaaaaaagcaatgcgtttactgggctaagactacatt
aaacagtgcccagtgccacataaaatatagttggtctactaggcatacct
gccatacactggaaaatggtacagttagtaaaggctatacaaattctttg
tagaaaaataacatatgtggattcaattgtatcttatcaccatgatgctg
tgcaacgaaatctctactcattttatccatacacacaaagaatctcatag
cagcaaacagaaccctcaacattgaaactgctgttctgaagcaaaatgca
tgctgcatttcgacagtaacaaagtttcagttcaagttttaattatcata
taaatagcatttcattttatgatagcctttcattttgataaatcagatct
aggactaatgtgaagactgctgataaagaagaagattcttaataaaaagc
actataacccacatttttaaaaagcatcattttcgaaaaaccttgagact
ttttaaatacaacccagactcaaaggtttattggaaatttgctggtaagg
tgtggccgtccaagaaaagactctctggaggcttgcaatttctgcgcctc
acacacatggca
gaattcaatcaaacttgatgagggagaaaaggccattgatttgaaggaga
attggagaaggtgggcttgaaaggagaaaaggggaggaaaaatgaaagta
aaaatgctagagtcagtcttgggggagaagctttataaattgttggtaca
aatttaaattattatatctaccctgtgatacagtatggaatttctttaac
acctacaaaaagatcagagatacctctcctgggagtgtaacaatgaaaag
aaacaaacttaaaggcatacctccttctgctacagccatattgacaatag
atagattatgcaatcagactagatgccagtgaacaaatgaatggatgatg
aaaaaatggtaaaattagaaatggagaattactcacccataaagagagag
taaaaatccacaaaaattacaaaagaaagtatacagccagggaaatccat
atgaaacaatataatccaagaacagaacaagtaaaacattcctctaatag
ttagataccagataaagcatctcaaattaatatgcgggaatggaatgaga
gtaacaagtcggggagaagaggggagtttggtaagatagattattgagag
gataaattctacgaaaaaaaatctagaaaagaaaagaaaagaaatagtag
aaatatattcagaactagaaactatgaatgtctggtaagatatcagtgac
tgtaagaaacatatcatattgcggagagatgacttctcagataagattac
tgatcatcttgcacaaaaacctctgctcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_54530404_54531621
seq2: B6Ng01-073F23.b_47_1258

seq1  GAATTCTCTGAACTTGAGACCTTGTACTTTCCAAGGATCTGGCAAACCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAACTTGAGACCTTGTACTTTCCAAGGATCTGGCAAACCAG  50

seq1  GCCCTTGCTTCTCTTCTATTCTACATCAAGTACTAACATTTCATGAGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGCTTCTCTTCTATTCTACATCAAGTACTAACATTTCATGAGTAT  100

seq1  GTGTCTATGTGCCAAACCCTTAAAAAACATAATTACTTACATGTTATGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTATGTGCCAAACCCTTAAAAAACATAATTACTTACATGTTATGTG  150

seq1  GAAATCAATGGTCTATTGTTTCAGCAGGCCACAAAACAGGAAAATATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAATGGTCTATTGTTTCAGCAGGCCACAAAACAGGAAAATATATT  200

seq1  TTAAGCAGGATGTATTGACAAACCATGTCTTTGTATGTATCCTTCTGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCAGGATGTATTGACAAACCATGTCTTTGTATGTATCCTTCTGAGA  250

seq1  GGGCTGTGTTCTCAGTATGAATGGCACTTATTCCAGATTTGGCCCAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTGTTCTCAGTATGAATGGCACTTATTCCAGATTTGGCCCAAGTT  300

seq1  TTCTGAAACATATCAAGGACACTTAGCTGTCTCTGTCTGGAAATCATTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAACATATCAAGGACACTTAGCTGTCTCTGTCTGGAAATCATTAC  350

seq1  AGTTTACTTAACATTAAGAGGGGCAATTCCTTATAGTGACATAGGTAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTACTTAACATTAAGAGGGGCAATTCCTTATAGTGACATAGGTAGTC  400

seq1  AACTTATGACCCACTTCATAAGGATCTTTCTAAATATTGTACTGGGAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATGACCCACTTCATAAGGATCTTTCTAAATATTGTACTGGGAATA  450

seq1  GGTTCTGAATGTCAATCTGCCAAGTGTTTTGAGTAAAATGGATGACTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGAATGTCAATCTGCCAAGTGTTTTGAGTAAAATGGATGACTGGC  500

seq1  TAAAATAACTTACCTTCAATTAGCAAAGGAGAAAGGAAATATTCACCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAACTTACCTTCAATTAGCAAAGGAGAAAGGAAATATTCACCAAT  550

seq1  CAACTTGACAACTAGAAATGAATGTAATGTTTGAAATTAGCTGTAAAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGACAACTAGAAATGAATGTAATGTTTGAAATTAGCTGTAAAGTT  600

seq1  CAGTCTATAATACAAAAAAAGCAATGCGTTTACTGGGCTAAGACTACATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTATAATACAAAAAAAGCAATGCGTTTACTGGGCTAAGACTACATT  650

seq1  AAACAGTGCCCAGTGCCACATAAAATATAGTTGGTCTACTAGGCATACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTGCCCAGTGCCACATAAAATATAGTTGGTCTACTAGGCATACCT  700

seq1  GCCATACACTGGAAAATGGTACAGTTAGTAAAGGCTATACAAATTCTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATACACTGGAAAATGGTACAGTTAGTAAAGGCTATACAAATTCTTTG  750

seq1  TAGAAAAATAACATATGTGGATTCAATTGTATCTTATCACCATGATGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAATAACATATGTGGATTCAATTGTATCTTATCACCATGATGCTG  800

seq1  TGCAACGAAATCTCTACTCATTTTATCCATACACACAAAGAATCTCATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACGAAATCTCTACTCATTTTATCCATACACACAAAGAATCTCATAG  850

seq1  CAGCAAACAGAACCCTCAACATTGAAACTGCTGTTCTGAAGCAAAATGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAACAGAACCCTCAACATTGAAACTGCTGTTCTGAAGCAAAATGCA  900

seq1  TGCTGCATTTCGACAGTAACAAAGTTTCAGTTCAAGTTTTAATTATCATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCATTTCGACAGTAACAAAGTTTCAGTTCAAGTTTTAATTATCATA  950

seq1  TAAATAGCATTTCATTTTATGATAGCCTTTCATTTTGATAAATCAGATCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGCATTTCATTTTATGATAGCCTTTCATTTTGATAAATCAGATCT  1000

seq1  AGGACTAATGTG-AGACTGCTGATACAGAAGAGAATTCTTAATAAAAAGC  1049
      |||||||||||| |||||||||||| ||||||  ||||||||||||||||
seq2  AGGACTAATGTGAAGACTGCTGATAAAGAAGAAGATTCTTAATAAAAAGC  1050

seq1  ACTATAACCCACCATTTTTAAAAAAGCACCATTTTCAGAAAAGACATTGA  1099
      ||||||||||| ||||||| |||||||| ||||||| ||||| || ||||
seq2  ACTATAACCCA-CATTTTT-AAAAAGCATCATTTTC-GAAAA-ACCTTGA  1096

seq1  GACTTTAT-AATACAAACACAGACTCCAAAGGTTTATTTGAAAATATTGC  1148
      |||||| | ||||| ||| |||||| |||||||||||| |||   |||  
seq2  GACTTTTTAAATAC-AACCCAGACT-CAAAGGTTTATTGGAA---ATTTG  1141

seq1  CTGGT-AGGTGTGGCTG-CAAAGAAAAGACTCCTCT-GAGGCTATGCAAA  1195
      ||||| ||||||||| | | ||||||||||| |||| |||||| |||  |
seq2  CTGGTAAGGTGTGGCCGTCCAAGAAAAGACT-CTCTGGAGGCT-TGC--A  1187

seq1  ATTTCTGC-ACTCACA-TCATGGCA  1218
      ||||||||  ||||||  |||||||
seq2  ATTTCTGCGCCTCACACACATGGCA  1212

seq1: chr17_54695664_54696442
seq2: B6Ng01-073F23.g_69_848 (reverse)

seq1  TTGAGCTGAGGTTTTTGTGCAAGATG-TCAGTGATCTTATCTGATGAGTC  49
      |||||| ||||||||||||||||||| ||||| |||||||||||  ||||
seq2  TTGAGCAGAGGTTTTTGTGCAAGATGATCAGTAATCTTATCTGAGAAGTC  50

seq1  ATCTCTCCACAATCTGATATGTTTCTTTCAGTCACTGATTTCTTACCAGA  99
      |||||||| |||| ||||||||||||| ||||||||||| ||||||||||
seq2  ATCTCTCCGCAATATGATATGTTTCTTACAGTCACTGATATCTTACCAGA  100

seq1  CATTCATAGTTTCTAGTTCTGAATATATTTCTACTATTTCTTTTCTTTTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATAGTTTCTAGTTCTGAATATATTTCTACTATTTCTTTTCTTTTC  150

seq1  TTTTCTAGATTTTTTTTCGTAGAATTTATCCTCTCAATAATCTATCTTAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAGATTTTTTTTCGTAGAATTTATCCTCTCAATAATCTATCTTAC  200

seq1  CAAACTCCCCTCTTCTCCCCGACTTGTTACTCTCATTCCATTCCCGCATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCCCCTCTTCTCCCCGACTTGTTACTCTCATTCCATTCCCGCATA  250

seq1  TTAATTTGAGATGCTTTATCTGGTATCTAACTATTAGAGGAATGTTTTAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTGAGATGCTTTATCTGGTATCTAACTATTAGAGGAATGTTTTAC  300

seq1  TTGTTCTGTTCTTGGATTATATTGTTTCATATGGATTTCCCTGGCTGTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTGTTCTTGGATTATATTGTTTCATATGGATTTCCCTGGCTGTAT  350

seq1  ACTTTCTTTTGTAATTTTTGTGGATTTTTACTCTCTCTTTATGGGTGAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTTTTGTAATTTTTGTGGATTTTTACTCTCTCTTTATGGGTGAGT  400

seq1  AATTCTCCATTTCTAATTTTACCATTTTTTCATCATCCATTCATTTGTTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCCATTTCTAATTTTACCATTTTTTCATCATCCATTCATTTGTTC  450

seq1  ACTGGCATCTAGTCTGATTGCATAATCTATCTATTGTCAATATGGCTGTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCATCTAGTCTGATTGCATAATCTATCTATTGTCAATATGGCTGTA  500

seq1  GCAGAAGGAGGTATGCCTTTAAGTTTGTTTCTTTTCATTGTTACACTCCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGGAGGTATGCCTTTAAGTTTGTTTCTTTTCATTGTTACACTCCC  550

seq1  AGGAGAGGTATCTCTGATCTTTTTGTAGGTGTTAAAGAAATTCCATACTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGGTATCTCTGATCTTTTTGTAGGTGTTAAAGAAATTCCATACTG  600

seq1  TATCACAGGGTAGATATAATAATTTAAATTTGTACCAACAATTTATAAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAGGGTAGATATAATAATTTAAATTTGTACCAACAATTTATAAAG  650

seq1  CTTCTCCCCCAAGACTGACTCTAGCATTTTTACTTTCATTTTTCCTCCCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCCCCAAGACTGACTCTAGCATTTTTACTTTCATTTTTCCTCCCC  700

seq1  TTTTCTCCTTTCAAGCCCACCTTCTCCAATTCTCCTTCAAATCAATGGCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCCTTTCAAGCCCACCTTCTCCAATTCTCCTTCAAATCAATGGCC  750

seq1  TTTTCTCCCTCATCAAGTTTGATTGAATTC  779
      ||||||||||||||||||||||||||||||
seq2  TTTTCTCCCTCATCAAGTTTGATTGAATTC  780