BAC Information

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BAC

Clone NameB6Ng01-073P05
Chromosome17 (Build37)
Map Location 36,251,589 - 36,252,727
singlet/doubletsinglet
Overlap genenone
Upstream geneLy6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik
Downstream geneH2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073P05.bB6Ng01-073P05.g
ACCDH890932DH890933
length1,1071,220
definitionDH890932|Mus musculus domesticus DNA, BAC clone: B6Ng01-073P05, 5' end.DH890933|Mus musculus domesticus DNA, BAC clone: B6Ng01-073P05, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcagagatccacctgcctctgtctgtcaggtgctggcattaaag
gtgtgtgccaccaacatccatcaagaaacattaattttatagacataaca
cattttgagttttaaagagacatgattgtagggcgagtgaccccattatc
ttgtaacaaatggcattgcctaacgcctgccacagtgttagtcagatggc
agatacttcagctggtccacaagaacctaagatttccagttgtcagttct
taggtgggttgttggttctcagatggactccacagtgtgctggtaggacc
aatatagaatcagccgtctttgcaggtaacaatgtattctcagagctagc
catccccatgactttgtggaaacttctttcctggccctttttcaatatgt
caaagtaggatttttatttcgtagagaacaaaacagagatgtggtattga
gctgttgtaataatgggtcttacaagcacatgcaagaatcgcagcttata
aataactcaagataggatccttaggactggcgagatggctcagtggataa
gagcactgactagtcgtccagaggtcttgaattcaaatcccagcaactac
atggtggctcacaaccatctgtaatgagatccgacgtcctcttctggtgc
gtctgaagacagctacagtgtacttatgtataatagtaaataaatctttg
ggcctgagcgagcagggttgactggagcgaccgggatccgacctgagtaa
gcagggctgaccggaacgagcagaggtcctaaaattcaactcctaacaac
cacacgaaggctcacaaccatctgtacagctacagcgtactcacatacat
aaaaataaataaataaatctttttttttaaagatgggttcttaactccaa
gagttaagccagcaaggggattagaaaggatattgtaaacaatccattaa
tttacatgcaacttgtgtacatggtattatacagacttttcactcagcat
ttagtgtaatctgtcagactgattttatacttaaaaatattagatttggg
ctgagaggtgcttcgtgttaagaagagactgactgctttgcgagaactgt
gtgaatc
gaattcagtattgcccctggtattacactatctctttgagtaaaagttag
gtcactgcccttcacaggaatttaccatcactaaggaagaaagaagtttc
tgaccgtaggagaaaccagaacagatatttagaattatagctgagttaca
cctatatacaggaatttacaatggtttaggaagtagatccggctgtggtt
ttagagtattgcattactcatgagatggttagctagaacaaaactcccta
gttagaaccatgacttgggtgtgaaagcccttgccctaggagtgaaaaga
tctcacacctggattctaagactatagctgaccttagatagggctgactc
tgtctcagttattttattgcccagttcctgccagactttgcgttttcatt
tcctctgttctgtgtaagagtcattaagcatccggttaccttatttgtac
cttgttgtcttctgcataaaaagtctgatgttcgatttgaaaaattacat
tcagattccacacaaactctcctgtgtgtgtgtctgtctgtcattcatcc
acgctttgcccacccgcgtcgagagaccccgttccacgcagacacaggga
cccagaaggtctgcggcaataggatacaggttatggtgtgcaaaagtgga
tttcctgcaccaactatgagatgtatgccccttcagaagtaaaagaaaag
ataacgagattagtccatttaaattagatcaagtgaagaacatttcactc
aatacttatacataaagtgatcactatttaaccgttaaataccctttatt
cactttgaaaactggtattaaaaagccgggtgtcatagtccataccttta
atccaagcactggagaggtagaggcatcctcatttgtgtcatgagttcag
aagaaccaggctacagaatgagggaagcaggagaaacggtggagggggag
aagaaaaagaagagaaaaccagactgggctagtcccagtcctgaagtggg
tttggagcgagatgggagagggagagcagtgaaaggcatcattactatca
ggagaatagaactggtcaattgttactgcattcagaacggaaattgagtt
ctcacagaataacttcattttggtctgcttactgaagatcatatacgtaa
gtgtcaatgaaaatatgattctggctgacatggttggaacgattcctacc
gtaagtatctgagtcttata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_36251589_36252727
seq2: B6Ng01-073P05.b_48_1154

seq1  GAATTCTCAGAGATCCACCTGCCTCTGTCTGTCAGGTGCTGGCATTAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGAGATCCACCTGCCTCTGTCTGTCAGGTGCTGGCATTAAAG  50

seq1  GTGTGTGCCACCAACATCCATCAAGAAACATTAATTTTATAGACATAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCCACCAACATCCATCAAGAAACATTAATTTTATAGACATAACA  100

seq1  CATTTTGAGTTTTAAAGAGACATGATTGTAGGGCGAGTGACCCCATTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGAGTTTTAAAGAGACATGATTGTAGGGCGAGTGACCCCATTATC  150

seq1  TTGTAACAAATGGCATTGCCTAACGCCTGCCACAGTGTTAGTCAGATGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACAAATGGCATTGCCTAACGCCTGCCACAGTGTTAGTCAGATGGC  200

seq1  AGATACTTCAGCTGGTCCACAAGAACCTAAGATTTCCAGTTGTCAGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTTCAGCTGGTCCACAAGAACCTAAGATTTCCAGTTGTCAGTTCT  250

seq1  TAGGTGGGTTGTTGGTTCTCAGATGGACTCCACAGTGTGCTGGTAGGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGGGTTGTTGGTTCTCAGATGGACTCCACAGTGTGCTGGTAGGACC  300

seq1  AATATAGAATCAGCCGTCTTTGCAGGTAACAATGTATTCTCAGAGCTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGAATCAGCCGTCTTTGCAGGTAACAATGTATTCTCAGAGCTAGC  350

seq1  CATCCCCATGACTTTGTGGAAACTTCTTTCCTGGCCCTTTTTCAATATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCATGACTTTGTGGAAACTTCTTTCCTGGCCCTTTTTCAATATGT  400

seq1  CAAAGTAGGATTTTTATTTCGTAGAGAACAAAACAGAGATGTGGTATTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAGGATTTTTATTTCGTAGAGAACAAAACAGAGATGTGGTATTGA  450

seq1  GCTGTTGTAATAATGGGTCTTACAAGCACATGCAAGAATCGCAGCTTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGTAATAATGGGTCTTACAAGCACATGCAAGAATCGCAGCTTATA  500

seq1  AATAACTCAAGATAGGATCCTTAGGACTGGCGAGATGGCTCAGTGGATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTCAAGATAGGATCCTTAGGACTGGCGAGATGGCTCAGTGGATAA  550

seq1  GAGCACTGACTAGTCGTCCAGAGGTCTTGAATTCAAATCCCAGCAACTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTGACTAGTCGTCCAGAGGTCTTGAATTCAAATCCCAGCAACTAC  600

seq1  ATGGTGGCTCACAACCATCTGTAATGAGATCCGACGTCCTCTTCTGGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGCTCACAACCATCTGTAATGAGATCCGACGTCCTCTTCTGGTGC  650

seq1  GTCTGAAGACAGCTACAGTGTACTTATGTATAATAGTAAATAAATCTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAGACAGCTACAGTGTACTTATGTATAATAGTAAATAAATCTTTG  700

seq1  GGCCTGAGCGAGCAGGGTTGACTGGAGCGACCGGGATCCGACCTGAGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGAGCGAGCAGGGTTGACTGGAGCGACCGGGATCCGACCTGAGTAA  750

seq1  GCAGGGCTGACCGGAACGAGCAGAGGTCCTAAAATTCAACTCCTAACAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCTGACCGGAACGAGCAGAGGTCCTAAAATTCAACTCCTAACAAC  800

seq1  CACACGAAGGCTCACAACCATCTGTACAGCTACAGCGTACTCACATACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGAAGGCTCACAACCATCTGTACAGCTACAGCGTACTCACATACAT  850

seq1  AAAAATAAATAAATAAATCTTTTTTTTTAAAGATGGGTTCCTTAACTCCA  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAAAATAAATAAATAAATCTTTTTTTTTAAAGATGGGTT-CTTAACTCCA  899

seq1  AGAGTTAAGCCAGCAAGGGGATTTAGAAAGGATATTTGTAAAACAATCCA  950
      ||||||||||||||||||||| |||||||||||| |||| ||||||||||
seq2  AGAGTTAAGCCAGCAAGGGGA-TTAGAAAGGATA-TTGT-AAACAATCCA  946

seq1  TTAATTTACCATGCAACCTTGTTGTACATGGTAATTTATACAGACTTTTC  1000
      |||||||| ||||||| |||| |||||||||||  |||||||||||||| 
seq2  TTAATTTA-CATGCAA-CTTG-TGTACATGGTA--TTATACAGACTTTT-  990

seq1  CACTCAGGCATTTAAGTGTAATCTTGTCAAGACTTGATTTTCTATTACCT  1050
      |||||| |||||| ||||||||| |||| |||| ||||||| ||    ||
seq2  CACTCA-GCATTT-AGTGTAATC-TGTC-AGAC-TGATTTTATA----CT  1031

seq1  TAAAAAATATTAGAATTTGGGGCTGGAGAGGTGGCTCCGTGGTTAAGAGA  1100
      | ||||||||||||  || ||||| ||||||| ||| ||| ||||||| |
seq2  T-AAAAATATTAGA--TTTGGGCT-GAGAGGT-GCTTCGT-GTTAAGA-A  1074

seq1  GAGCACTGACTGCTTTTGCGGAGAACCTGTGTTTGAATC  1139
      ||| ||||||||| ||||| ||||||   ||| ||||||
seq2  GAG-ACTGACTGC-TTTGC-GAGAAC---TGTGTGAATC  1107