BAC Information

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BAC

Clone NameB6Ng01-074J19
Chromosome17 (Build37)
Map Location 24,699,872 - 24,700,911
singlet/doubletsinglet
Overlap genePkd1
Upstream geneZfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757, BC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26
Downstream geneTsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074J19.bB6Ng01-074J19.g
ACCDH891406DH891407
length1,1601,041
definitionDH891406|Mus musculus domesticus DNA, BAC clone: B6Ng01-074J19, 5' end.DH891407|Mus musculus domesticus DNA, BAC clone: B6Ng01-074J19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgtaccacatttttaatagggttacttggttt
tctggaatccaatttcttgagttctttatatatattggatattagtcccc
tatctgatttaggataggtaaagatctcttcccaatcttttggtggtctt
tttgtcttattgacagtgtcctttgccttacagaatctttgcaattttat
gaggtcccatttgtcgattcttgatcttacagcacaagccattgctgttc
tattccggatttttttcccctgtgcccatatcttcaaggctcttccccac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttga
tccacttagacttgagctttttgtacaaggagaaaagaatggatcaattc
tcattcttctacatgataaccgccagttgtgccagcaccatttgctgaaa
atgctgtcttttttccactggatggttttagctcctttgtcaaagatcaa
gtgaccataggtgtgtgggttcatttctgggtctccaattctattccatt
gatctacctgtctgtcactataccagtaccatgcagtttttatcacaatt
gctctgtagtacagcttgaggtcaggcatggtgattccaccagaagttct
tttatcattgagaatagtttttgctaccctaggttttttgttattccaaa
tgaatttgcaaattgccctttctaactctgtgaagaattgaattgaaatt
ttgatggggattgcattgaatctgtagattgcttttggcaagattgccat
ttttactatattaatcctgccaatccatgagcattggagatctttccaac
ttctgagatctttttttatttctttcttcaaagacttgaagttttttttt
aaaagatttatttattattatatgtaagtacactgtagctgtcttcagac
acaccagaagagggagtcagatctgttatgggatggttgtgagccaccat
gtggtgctgggagttgaactctggatctttggaaaagcagtcggtgcttc
tttaccccactggagcacctaccagcccaagactgaagttctatccacag
atcttccttcctagtaaggtacaccaaggaattataatatattttgggac
acatttgaga
gaattctggggaataaactcaggtctcccatcaagcactttacagattga
gctatctccccacattctattcccgcatgtcttaattcttctcaacagta
cttctagacaaaccttcatagcatcttttttgaagtctggggtgcctttc
ctccccatttttatgcgtaggtggtatgcttgtgtatgtttgcatgtgta
tacagatggatgtaggaaatcctgaggttgatgttgggaatcttccttgg
tcattcttccatctttctttgaggcaaggtctctaatcaaacccagagct
cgtcagtatggctagtctcaccagccagaatttatgagggttctggagat
gtaaacttcagtcctcttgcttctgaggcaagtgctttcagaatgctgag
ccatctccacatcctgaatgaagggtttgtgatggtttatttggagaaat
ttgctgtgtgtcatcaccagcactgtggtgcggggttatccagcaggact
cttccttagacagctcatcttagtgcccctatggcatcttgtgaacattt
gaggatcctctactagcagctggtttctccagccctggtaaaccctgaat
cttacgtaaaaaagtataaggagccggtccttgcttgtatgggacccttc
tattgtattggaggtagcccaaggttcttcttttggaggagggctgtgga
ggtcacagagaaggtgctcgggtcagttattttgtgtggctactgtaatg
gtcctcggtacaggactgagttgcttgcagattctgaggtccttggctct
tctactgcagtttccccagattacttatttctcacatctttcatgagaaa
atgtgtgtgaatttgaccacaaccacttccttgcttggtggccctgacct
tggcccctagctgcccgctgtgtctcagtgcctgcactgaagggcatcag
cagaggtcacggaagaccacctgccttgttctactttcccttagagatct
gtataaccttggttcattctgagctcccacgaaaaactttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_24699872_24700911
seq2: B6Ng01-074J19.g_70_1110

seq1  GAATTCTGGGGAATAAACTCAGGTCTCCCATCAAGCACTTTACAGATTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGGAATAAACTCAGGTCTCCCATCAAGCACTTTACAGATTGA  50

seq1  GCTATCTCCCCACATTCTATTCCCGCATGTCTTAATTCTTCTCAACAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCTCCCCACATTCTATTCCCGCATGTCTTAATTCTTCTCAACAGTA  100

seq1  CTTCTAGACAAACCTTCATAGCATCTTTTTTGAAGTCTGGGGTGCCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGACAAACCTTCATAGCATCTTTTTTGAAGTCTGGGGTGCCTTTC  150

seq1  CTCCCCATTTTTATGCGTAGGTGGTATGCTTGTGTATGTTTGCATGTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCATTTTTATGCGTAGGTGGTATGCTTGTGTATGTTTGCATGTGTA  200

seq1  TACAGATGGATGTAGGAAATCCTGAGGTTGATGTTGGGAATCTTCCTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATGGATGTAGGAAATCCTGAGGTTGATGTTGGGAATCTTCCTTGG  250

seq1  TCATTCTTCCATCTTTCTTTGAGGCAAGGTCTCTAATCAAACCCAGAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTCCATCTTTCTTTGAGGCAAGGTCTCTAATCAAACCCAGAGCT  300

seq1  CGTCAGTATGGCTAGTCTCACCAGCCAGAATTTATGAGGGTTCTGGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCAGTATGGCTAGTCTCACCAGCCAGAATTTATGAGGGTTCTGGAGAT  350

seq1  GTAAACTTCAGTCCTCTTGCTTCTGAGGCAAGTGCTTTCAGAATGCTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACTTCAGTCCTCTTGCTTCTGAGGCAAGTGCTTTCAGAATGCTGAG  400

seq1  CCATCTCCACATCCTGAATGAAGGGTTTGTGATGGTTTATTTGGAGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCCACATCCTGAATGAAGGGTTTGTGATGGTTTATTTGGAGAAAT  450

seq1  TTGCTGTGTGTCATCACCAGCACTGTGGTGCGGGGTTATCCAGCAGGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTGTGTCATCACCAGCACTGTGGTGCGGGGTTATCCAGCAGGACT  500

seq1  CTTCCTTAGACAGCTCATCTTAGTGCCCCTATGGCATCTTGTGAACATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTAGACAGCTCATCTTAGTGCCCCTATGGCATCTTGTGAACATTT  550

seq1  GAGGATCCTCTACTAGCAGCTGGTTTCTCCAGCCCTGGTAAACCCTGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATCCTCTACTAGCAGCTGGTTTCTCCAGCCCTGGTAAACCCTGAAT  600

seq1  CTTACGTAAAAAAGTATAAGGAGCCGGTCCTTGCTTGTATGGGACCCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACGTAAAAAAGTATAAGGAGCCGGTCCTTGCTTGTATGGGACCCTTC  650

seq1  TATTGTATTGGAGGTAGCCCAAGGTTCTTCTTTTGGAGGAGGGCTGTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTATTGGAGGTAGCCCAAGGTTCTTCTTTTGGAGGAGGGCTGTGGA  700

seq1  GGTCACAGAGAAGGTGCTCGGGTCAGTTATTTTGTGTGGCTACTGTAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACAGAGAAGGTGCTCGGGTCAGTTATTTTGTGTGGCTACTGTAATG  750

seq1  GTCCTCGGTACAGGACTGAGTTGCTTGCAGATTCTGAGGTCCTTGGCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCGGTACAGGACTGAGTTGCTTGCAGATTCTGAGGTCCTTGGCTCT  800

seq1  TCTACTGCAGTTTCCCCAGATTACTTATTTCTCACATCTTTCATGAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGCAGTTTCCCCAGATTACTTATTTCTCACATCTTTCATGAGAAA  850

seq1  ATGTGTGTGAATTTGACCACAACCACTTCC-TGCTTGGTGGCCCTGACCT  899
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATGTGTGTGAATTTGACCACAACCACTTCCTTGCTTGGTGGCCCTGACCT  900

seq1  TGGCCCCTAGCTGCCCGCTGTGTCTCAGTGCCTGCCACTGAAGGGCATCA  949
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGGCCCCTAGCTGCCCGCTGTGTCTCAGTGCCTG-CACTGAAGGGCATCA  949

seq1  GCAGAGGTCACGGAAGAGCAGCCTGCCTTGCTCTACTTTCCCTTAGAGAT  999
      ||||||||||||||||| || ||||||||| |||||||||||||||||||
seq2  GCAGAGGTCACGGAAGACCA-CCTGCCTTGTTCTACTTTCCCTTAGAGAT  998

seq1  CTGTAACACCTTGG-TCATTCTGAGCTCCCACG-AGAACTTTT  1040
      |||||  ||||||| |||||||||||||||||| | |||||||
seq2  CTGTATAACCTTGGTTCATTCTGAGCTCCCACGAAAAACTTTT  1041