BAC Information

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BAC

Clone NameB6Ng01-075C03
Chromosome17 (Build37)
Map Location 34,906,185 - 35,053,906
singlet/doubletdoublet
Overlap geneSkiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4
Upstream geneAngptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1
Downstream geneNeu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075C03.bB6Ng01-075C03.g
ACCDH891776DH891777
length1,0851,106
definitionDH891776|Mus musculus domesticus DNA, BAC clone: B6Ng01-075C03, 5' end.DH891777|Mus musculus domesticus DNA, BAC clone: B6Ng01-075C03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,906,185 - 34,907,273)(35,052,796 - 35,053,906)
sequence
gaattcagtaagaatgttacctattcagtaacattcaaattctcttctag
tatagacagtgaaactaattaggcattacaatttactcaaacagagctag
aaaagctcagggctagtctacatagtaattacttaggacaatagctgagt
cacacccaaacacaggaatacacaatgagctaggaaatagatgggttgtc
ccctgaaccgtactcagtactcggtaccagataatggcaacagcctacaa
ctggccacacacagttaaatgcagcatcctaactaacaactgtacaggta
tttcctgacagcatttcatttgcatctctctaactattagtgattcttcc
tatgcttgccagctgtggaggtttctcttctgagacctagagttatgtta
tgttgtgttatatatgtccgtgattgttatgttgtattatatacatgccc
atttaaggtttaggggagaaacctagagttcaccagggttatggagctgg
gattcgatcccaggtagcctggatcttaaccactgcactgtcctgcctga
gtcctggcccttctaccaggggccgcttacccaccctgctcaccttgacc
agacccctgctgaaaagcatttccacaatctccttaaggatgggcaggat
gccgctgtggtgcacacccaggccacagcgaaggagctccgacatgtgca
ggacctgcagctcgaggagggaggagagggcaatggtcagagaagatgca
gatggaaccccttggcaggaggggcatgtctcagatcaccacatccctac
ctgcatcagcaggagggccaggtttcagatcaacacatccctacctgtat
ttacagacacacacctggggtagctgtcagtgagagcctcagagccgagc
aaggcagcactgcaggaagagtggatctcactcttctccaagcttgtcgt
gaggtctagagaggtgaggcccatcacagcgtccttgggagaagtgaaca
ctaccactggcaactgagcccgggtccggagggaagccagcagaacaggt
acaccccgcgtcctgaggaggaaggggaggggata
gaattcttctgctgaaatattgcacagataataacaaacatacatacata
catagagagagagagagagagagatcatgtgcagttgcttcttttcctca
catatacacacacctgagtagctagcacccaagtccagaagtagagtgac
ccagtaccccgagtcccctcaagtccttctagacaacacagatgcctcag
gggaccaggttcttgcattaaaccaaatcctccccacatctctcggggcc
actgcccgtagctcacctgtttttgatggggcctcgaaaggaggggtcat
atttggccgaattccctggaggggggagtagagaataaggcattgagggt
ctcttcccccacatccagtcgctctcagacactcaatggtcccaggcgcc
tgtctagctcactaacaggactggacctggattagcagtatcctggtcag
agagcagccccatggttgccagcttgtgactgctactgggcaacagctgg
gaggtggggcctttatttttggcaatcttagatatcaaatctatggtttc
ttacatgggaggcaagtgctctgccactaaactgtaaccacagccaacta
ttttatttatttatttactttttttttttttttttggagacagggtttct
ttgtaaagttttagcttcttggaactatctctgtagcccaggctggcctt
gaactcacagagatctgcctggctctgtctcccaggtgttgggattaaag
gcatgtgtctccaggccgcagccatttgttttaaattttactttgtattt
cagacaagatcttgctgagttctccaagctggacttaaacttgcttcagc
ctcctgactggtttttagaataagcttctgaaaatgggttcttaaaggga
ctcaaggcttctgagtagtgtgtaacccagtttctgggacttcctcttag
tggctcgcagaccccagtcctatctctgtcctcagctgttcaagtctctt
ctggactatccagtctgggagcccctcaggggacttcctactttatttca
actctctgggccaaggatatgaccaaaaaaagatattaagctatgaaact
tgcagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_34906185_34907273
seq2: B6Ng01-075C03.b_45_1129

seq1  GAATTCAGTAAGAATGTTACCTATTCAGTAACATTCAAATTCTCTTCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAAGAATGTTACCTATTCAGTAACATTCAAATTCTCTTCTAG  50

seq1  TATAGACAGTGAAACTAATTAGGCATTACAATTTACTCAAACAGAGCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGACAGTGAAACTAATTAGGCATTACAATTTACTCAAACAGAGCTAG  100

seq1  AAAAGCTCAGGGCTAGTCTACATAGTAATTACTTAGGACAATAGCTGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTCAGGGCTAGTCTACATAGTAATTACTTAGGACAATAGCTGAGT  150

seq1  CACACCCAAACACAGGAATACACAATGAGCTAGGAAATAGATGGGTTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCAAACACAGGAATACACAATGAGCTAGGAAATAGATGGGTTGTC  200

seq1  CCCTGAACCGTACTCAGTACTCGGTACCAGATAATGGCAACAGCCTACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAACCGTACTCAGTACTCGGTACCAGATAATGGCAACAGCCTACAA  250

seq1  CTGGCCACACACAGTTAAATGCAGCATCCTAACTAACAACTGTACAGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCACACACAGTTAAATGCAGCATCCTAACTAACAACTGTACAGGTA  300

seq1  TTTCCTGACAGCATTTCATTTGCATCTCTCTAACTATTAGTGATTCTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGACAGCATTTCATTTGCATCTCTCTAACTATTAGTGATTCTTCC  350

seq1  TATGCTTGCCAGCTGTGGAGGTTTCTCTTCTGAGACCTAGAGTTATGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTGCCAGCTGTGGAGGTTTCTCTTCTGAGACCTAGAGTTATGTTA  400

seq1  TGTTGTGTTATATATGTCCGTGATTGTTATGTTGTATTATATACATGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGTTATATATGTCCGTGATTGTTATGTTGTATTATATACATGCCC  450

seq1  ATTTAAGGTTTAGGGGAGAAACCTAGAGTTCACCAGGGTTATGGAGCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGGTTTAGGGGAGAAACCTAGAGTTCACCAGGGTTATGGAGCTGG  500

seq1  GATTCGATCCCAGGTAGCCTGGATCTTAACCACTGCACTGTCCTGCCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCGATCCCAGGTAGCCTGGATCTTAACCACTGCACTGTCCTGCCTGA  550

seq1  GTCCTGGCCCTTCTACCAGGGGCCGCTTACCCACCCTGCTCACCTTGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGCCCTTCTACCAGGGGCCGCTTACCCACCCTGCTCACCTTGACC  600

seq1  AGACCCCTGCTGAAAAGCATTTCCACAATCTCCTTAAGGATGGGCAGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCCTGCTGAAAAGCATTTCCACAATCTCCTTAAGGATGGGCAGGAT  650

seq1  GCCGCTGTGGTGCACACCCAGGCCACAGCGAAGGAGCTCCGACATGTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCTGTGGTGCACACCCAGGCCACAGCGAAGGAGCTCCGACATGTGCA  700

seq1  GGACCTGCAGCTCGAGGAGGGAGGAGAGGGCAATGGTCAGAGAAGATGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGCAGCTCGAGGAGGGAGGAGAGGGCAATGGTCAGAGAAGATGCA  750

seq1  GATGGAACCCCTTGGCAGGAGGGGCATGTCTCAGATCACCACATCCCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAACCCCTTGGCAGGAGGGGCATGTCTCAGATCACCACATCCCTAC  800

seq1  CTGCATCAGCAGGAGGGCCAGGTTTCAGATCAACACATCCCTACCTGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATCAGCAGGAGGGCCAGGTTTCAGATCAACACATCCCTACCTGTAT  850

seq1  TTACAGACACACACCTGGGGTAGCTGTCAGTGAGAGCCTCAGAGCCGAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGACACACACCTGGGGTAGCTGTCAGTGAGAGCCTCAGAGCCGAGC  900

seq1  AAGGCAGCACTGCAGGAAGAGGTGGATCTCACTCTTCTCCAAGCTTGTCG  950
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAGGCAGCACTGCAGGAAGA-GTGGATCTCACTCTTCTCCAAGCTTGTCG  949

seq1  TGAGGTCTAGAGAGGTGAGGCCCATCACAGCGTCCTTGGGAGAAGGTGAA  1000
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGAGGTCTAGAGAGGTGAGGCCCATCACAGCGTCCTTGGGAGAA-GTGAA  998

seq1  CACTACCACTGGCAACTGAGCCCGGGTCCGGAGGGAAGCCAGCAGGAACA  1050
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CACTACCACTGGCAACTGAGCCCGGGTCCGGAGGGAAGCCAGCA-GAACA  1047

seq1  GGTACACCCCGCGGTCCTGAGGGAGGAGGGGAGGGGATA  1089
      |||||||||||| |||||||||  | |||||||||||||
seq2  GGTACACCCCGC-GTCCTGAGGAGGAAGGGGAGGGGATA  1085

seq1: chr17_35052796_35053906
seq2: B6Ng01-075C03.g_68_1173 (reverse)

seq1  CCTGCAGGGTTTCATAGCTTTACTATCCTTTCTTTGTCATATCCTTGGGC  50
      ||||||  |||||||||| ||| |||| ||| || ||||||||||||| |
seq2  CCTGCA-AGTTTCATAGC-TTAATATCTTTTTTTGGTCATATCCTTGGCC  48

seq1  CAGAGGGCTGAGATAAGTGATGATGGTCCCCTGAGGGGCTCCCAGACTGG  100
      ||||| | ||| ||||   | ||  |||||||||||||||||||||||||
seq2  CAGAGAGTTGAAATAAAGTAGGA-AGTCCCCTGAGGGGCTCCCAGACTGG  97

seq1  ATAGTCCAGAGATGACTTGGAACAGGCTGGAGGACAGAGATAGGACTGGG  150
      ||||||||||   ||||| ||||| ||| |||||||||||||||||||||
seq2  ATAGTCCAGAAGAGACTT-GAACA-GCT-GAGGACAGAGATAGGACTGGG  144

seq1  GTCTGCGAGCCACTAAGAGGGAGTCCCAGAACCTGGGTTACACACTACTC  200
      |||||||||||||||||||| |||||||||| ||||||||||||||||||
seq2  GTCTGCGAGCCACTAAGAGGAAGTCCCAGAAACTGGGTTACACACTACTC  194

seq1  AGAAGCCTTGAGTCCCTTTAAGAA-CCACTTTCAGAAGCTTATTCTAAAA  249
      |||||||||||||||||||||||| ||| |||||||||||||||||||||
seq2  AGAAGCCTTGAGTCCCTTTAAGAACCCATTTTCAGAAGCTTATTCTAAAA  244

seq1  ACCAGTCAGGAGGCTGAAGCAAGTTTAAGTCCAGCTTGGAGAACTCAGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTCAGGAGGCTGAAGCAAGTTTAAGTCCAGCTTGGAGAACTCAGCA  294

seq1  AGATCTTGTCTGAAATACAAAGTAAAATTTAAAACAAATGGCTGCGGCCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTGTCTGAAATACAAAGTAAAATTTAAAACAAATGGCTGCGGCCT  344

seq1  GGAGACACATGCCTTTAATCCCAACACCTGGGAGACAGAGCCAGGCAGAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACACATGCCTTTAATCCCAACACCTGGGAGACAGAGCCAGGCAGAT  394

seq1  CTCTGTGAGTTCAAGGCCAGCCTGGGCTACAGAGATAGTTCCAAGAAGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGAGTTCAAGGCCAGCCTGGGCTACAGAGATAGTTCCAAGAAGCT  444

seq1  AAAACTTTACAAAGAAACCCTGTCTCCAAAAAAAAAAAAAAAAAGTAAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTTACAAAGAAACCCTGTCTCCAAAAAAAAAAAAAAAAAGTAAAT  494

seq1  AAATAAATAAAATAGTTGGCTGTGGTTACAGTTTAGTGGCAGAGCACTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAAATAGTTGGCTGTGGTTACAGTTTAGTGGCAGAGCACTTG  544

seq1  CCTCCCATGTAAGAAACCATAGATTTGATATCTAAGATTGCCAAAAATAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCATGTAAGAAACCATAGATTTGATATCTAAGATTGCCAAAAATAA  594

seq1  AGGCCCCACCTCCCAGCTGTTGCCCAGTAGCAGTCACAAGCTGGCAACCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCCACCTCCCAGCTGTTGCCCAGTAGCAGTCACAAGCTGGCAACCA  644

seq1  TGGGGCTGCTCTCTGACCAGGATACTGCTAATCCAGGTCCAGTCCTGTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTGCTCTCTGACCAGGATACTGCTAATCCAGGTCCAGTCCTGTTA  694

seq1  GTGAGCTAGACAGGCGCCTGGGACCATTGAGTGTCTGAGAGCGACTGGAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTAGACAGGCGCCTGGGACCATTGAGTGTCTGAGAGCGACTGGAT  744

seq1  GTGGGGGAAGAGACCCTCAATGCCTTATTCTCTACTCCCCCCTCCAGGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGAAGAGACCCTCAATGCCTTATTCTCTACTCCCCCCTCCAGGGA  794

seq1  ATTCGGCCAAATATGACCCCTCCTTTCGAGGCCCCATCAAAAACAGGTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGGCCAAATATGACCCCTCCTTTCGAGGCCCCATCAAAAACAGGTGA  844

seq1  GCTACGGGCAGTGGCCCCGAGAGATGTGGGGAGGATTTGGTTTAATGCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACGGGCAGTGGCCCCGAGAGATGTGGGGAGGATTTGGTTTAATGCAA  894

seq1  GAACCTGGTCCCCTGAGGCATCTGTGTTGTCTAGAAGGACTTGAGGGGAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGGTCCCCTGAGGCATCTGTGTTGTCTAGAAGGACTTGAGGGGAC  944

seq1  TCGGGGTACTGGGTCACTCTACTTCTGGACTTGGGTGCTAGCTACTCAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGGTACTGGGTCACTCTACTTCTGGACTTGGGTGCTAGCTACTCAGG  994

seq1  TGTGTGTATATGTGAGGAAAAGAAGCAACTGCACATGATCTCTCTCTCTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATATGTGAGGAAAAGAAGCAACTGCACATGATCTCTCTCTCTC  1044

seq1  TCTCTCTCTATGTATGTATGTATGTTTGTTATTATCTGTGCAATATTTCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTATGTATGTATGTATGTTTGTTATTATCTGTGCAATATTTCA  1094

seq1  GCAGAAGAATTC  1111
      ||||||||||||
seq2  GCAGAAGAATTC  1106