BAC Information

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BAC

Clone NameB6Ng01-075F23
Chromosome17 (Build37)
Map Location 54,437,509 - 54,580,549
singlet/doubletdoublet
Overlap geneLOC668529, 1700025K24Rik, Trp53-ps
Upstream geneEG629036, LOC668512, Efhb, LOC668513, Rab5a, 4921523A10Rik, Pcaf, EG628822, Sgol1, EG629065, 4932415M13Rik, Ck-ps1, EG637939, Sult1c2, LOC100043826, LOC100043471, EG668523, LOC629121, Gm324, Sult1c1, LOC100043829, EG435531, Slc5a7
Downstream geneLOC240117, EG629178, LOC100043833, LOC100043485, LOC677496
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075F23.bB6Ng01-075F23.g
ACCDH891951DH891952
length9141,090
definitionDH891951|Mus musculus domesticus DNA, BAC clone: B6Ng01-075F23, 5' end.DH891952|Mus musculus domesticus DNA, BAC clone: B6Ng01-075F23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,437,509 - 54,438,412)(54,579,458 - 54,580,549)
sequence
gaattcctgttctcttatactgaacaaaccagtgctatttccttcacccc
agttcacaggcgtaagtttttgtgggagggggtctgagctttgcaagcgg
gttctggctgcaagcactcacctccgggatgttctggagcgccccggacc
gggtgggctccgcctttgtgagcccagagccaccaaatttcccctccgcc
caaactcccccgcgccctgctcccctttgcctctgagctctggatctcct
gaatccagactcctacagtcgctagcacccctagagccacaagtgcttct
taactgagcggaggggacatccccagcaggcagagtcgatccttcccggg
cggccccgagggtgtggccctagctcttgttcccgtagggctcttacctt
tgcgtcacccggagctgctttaggggtccaggagccccttgagccccggg
ctgtgagggacacggagggagggaggctcgaggtgagtggagggggctcc
ggcaaggagcccgatgaggactccgagggggtgaagcgatcgatctgggt
attggaaaaagtctctttataagggcggaaggcgggggcgatcgtcagag
ctctggagaaggacgtcagaacaaagtggtgctgggcgtgagttgcggac
tgtgccctggtgtggcccggggtgcgagggaacagccaagctcagatcca
gcacttgcccaagttcatgttcccatcccaagtcaagtcgtctgctaccc
tagaatggaggactccagactaaaggtcatttcccagccctacctgccca
cttttatctttctgggttgcaaaagacagccaatggactcgtgaggattt
cacttgcagattgcagactggaagctttccaaacccccgcctttgaaggt
gtccacattgcaag
gaattcacttgttggattagaccttcaggtacagaattggtattactata
tatagcaacaaaccaaacattctttaaaatgtatatgtgtttacaggaca
cagccaatctattttttaaaaatgcatcaaaacgaagaaggtaactgaga
gctaaatgagatagacaggtcatatgaaccaccttctctgctgtctttga
ataaaagcaagtcctctcacagagatgcatgatgaaaaatagtatgcaga
atcagcaaaaaggaattccaaagaaagcattttaatattgattatgtgtt
gagctcctctatctttgagggacagaacagaaacttctacttacaagatc
ctccacattaaactattctcttcaatgtgccatcgtgacaactctgctca
gccaccaagaatgtgatttctctggtttcctatcaagaattataggggac
ttttgggataacatttgaaatgtaaatgaagaaaatatctaattaaaaaa
aagaatttaccattcgggggggggggagacttatacacaccaaggaccaa
gaccactcaacatagtaggcttatgtaccacaggggccaacaatttttgt
accaactcaagaggcatcagtttcaggatgcctggaaaggacatatacaa
ttatagaatcactatgaaaagagaagcccaaagctatgacatagtcttat
ttaagggcaatgagtccaggagcacctggttttatacaggaattttctgg
aagtgtagtaaattagctaattttttcagattatttgaagaaaattgatc
atcattttcttcccacagaggagtgtttttctttagctctttaactcaat
ttgtcatgccataactgggttctgctaagcaatgtttccattgtggtgtt
tataactactaaaagaagaatgaaagaaagagggaaattgggaaggaaac
agatgggaaaacagagaggatgaaataaacactcattaccttgagtttaa
acctcccagcagaaaatggggcatgtaaattgtctttccatagcatacag
caggcataagtttatatcatcctagtgtgcttagccaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_54437509_54438412
seq2: B6Ng01-075F23.b_44_957

seq1  GAATTCCTGTTCTCTTATACTGAACAAACCAGTGCTATTTCCTTCACCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTTCTCTTATACTGAACAAACCAGTGCTATTTCCTTCACCCC  50

seq1  AGTTCACAGGCGTAAGTTTTTGTGGGAGGGGGTCTGAGCTTTGCAAGCGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACAGGCGTAAGTTTTTGTGGGAGGGGGTCTGAGCTTTGCAAGCGG  100

seq1  GTTCTGGCTGCAAGCACTCACCTCCGGGATGTTCTGGAGCGCCCCGGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGCTGCAAGCACTCACCTCCGGGATGTTCTGGAGCGCCCCGGACC  150

seq1  GGGTGGGCTCCGCCTTTGTGAGCCCAGAGCCACCAAATTTCCCCTCCGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGCTCCGCCTTTGTGAGCCCAGAGCCACCAAATTTCCCCTCCGCC  200

seq1  CAAACTCCCCCGCGCCCTGCTCCCCTTTGCCTCTGAGCTCTGGATCTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCCCCCGCGCCCTGCTCCCCTTTGCCTCTGAGCTCTGGATCTCCT  250

seq1  GAATCCAGACTCCTACAGTCGCTAGCACCCCTAGAGCCACAAGTGCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCAGACTCCTACAGTCGCTAGCACCCCTAGAGCCACAAGTGCTTCT  300

seq1  TAACTGAGCGGAGGGGACATCCCCAGCAGGCAGAGTCGATCCTTCCCGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGAGCGGAGGGGACATCCCCAGCAGGCAGAGTCGATCCTTCCCGGG  350

seq1  CGGCCCCGAGGGTGTGGCCCTAGCTCTTGTTCCCGTAGGGCTCTTACCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCCCGAGGGTGTGGCCCTAGCTCTTGTTCCCGTAGGGCTCTTACCTT  400

seq1  TGCGTCACCCGGAGCTGCTTTAGGGGTCCAGGAGCCCCTTGAGCCCCGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTCACCCGGAGCTGCTTTAGGGGTCCAGGAGCCCCTTGAGCCCCGGG  450

seq1  CTGTGAGGGACACGGAGGGAGGGAGGCTCGAGGTGAGTGGAGGGGGCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGGGACACGGAGGGAGGGAGGCTCGAGGTGAGTGGAGGGGGCTCC  500

seq1  GGCAAGGAGCCCGATGAGGACTCCGAGGGGGTGAAGCGATCGATCTGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGGAGCCCGATGAGGACTCCGAGGGGGTGAAGCGATCGATCTGGGT  550

seq1  ATTGGAAAAAGTCTCTTTATAAGGGCGGAAGGCGGGGGCGATCGTCAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAAAAGTCTCTTTATAAGGGCGGAAGGCGGGGGCGATCGTCAGAG  600

seq1  CTCTGGAGAAGGACGTCAGAACAAAGTGGTGCTGGGCGTGAGTTGCGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAGAAGGACGTCAGAACAAAGTGGTGCTGGGCGTGAGTTGCGGAC  650

seq1  TGTGCCCTGGTGTGGCCCGGGGTGCGAGGGAACAGCCAAGCTCAGATCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCTGGTGTGGCCCGGGGTGCGAGGGAACAGCCAAGCTCAGATCCA  700

seq1  GCACTTGCCCAAGTTCATGTTCCCATCCCAAGTCAAGTCGTCTGCTACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGCCCAAGTTCATGTTCCCATCCCAAGTCAAGTCGTCTGCTACCC  750

seq1  TAGAATGGAGGACTCCAGACTAAAGGTCATTTCCCAG-CCTACCTGCCCA  799
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TAGAATGGAGGACTCCAGACTAAAGGTCATTTCCCAGCCCTACCTGCCCA  800

seq1  C-TTTATCTTTCTGGGTTGCAAAAGACAG-CAATGGACTTG-GAGGATTT  846
      | ||||||||||||||||||||||||||| ||||||||| | ||||||||
seq2  CTTTTATCTTTCTGGGTTGCAAAAGACAGCCAATGGACTCGTGAGGATTT  850

seq1  CACTTGCAGA-TGCAGACTGGAAGC-TTCCAAA-CCCCGCCTT--GAGGT  891
      |||||||||| |||||||||||||| ||||||| |||||||||   ||||
seq2  CACTTGCAGATTGCAGACTGGAAGCTTTCCAAACCCCCGCCTTTGAAGGT  900

seq1  GTCCACA-TGCAAG  904
      ||||||| ||||||
seq2  GTCCACATTGCAAG  914

seq1: chr17_54579458_54580549
seq2: B6Ng01-075F23.g_68_1156 (reverse)

seq1  TTTGGCTAAGCAACCTA-GATGATAT-AACTTATGCCTGCTGTATGCTAT  48
      ||||||||||||  ||| |||||||| |||||||||||||||||||||||
seq2  TTTGGCTAAGCACACTAGGATGATATAAACTTATGCCTGCTGTATGCTAT  50

seq1  GGAAGGACAATTATACATGCCACATTTTCTGCTAGGAGTTTTAAACTCAA  98
      |||| ||||||| |||||||| ||||||||||| |||| |||||||||||
seq2  GGAAAGACAATT-TACATGCCCCATTTTCTGCTGGGAGGTTTAAACTCAA  99

seq1  GGTTAATGAGTGTTTATTTCATCTCTCT-TGTTTTCCCATCTGTTTTCCT  147
      || |||||||||||||||||||| |||| |||||||||||||| ||||||
seq2  GG-TAATGAGTGTTTATTTCATC-CTCTCTGTTTTCCCATCTG-TTTCCT  146

seq1  TCCCAATTTCCCTCTTTCTTTCATTCTTTCTTTTTAGTAGTTATAAACAC  197
      ||||||||||||||||||||||||||||   |||||||||||||||||||
seq2  TCCCAATTTCCCTCTTTCTTTCATTCTT--CTTTTAGTAGTTATAAACAC  194

seq1  CACAATGGAAACAATTGCTTAGCAGAACCCAGTTATGGCATGACAAATTG  247
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CACAATGGAAAC-ATTGCTTAGCAGAACCCAGTTATGGCATGACAAATTG  243

seq1  AGTTAAAGAGCT-AAGAAAAACACTCCTCTGTGGGAAGAAAATGATGATC  296
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAGAGCTAAAGAAAAACACTCCTCTGTGGGAAGAAAATGATGATC  293

seq1  AATTTTCTTCAAATAATCTGAAAAAATTAGCTAATTTACTACACTTCCAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTTCAAATAATCTGAAAAAATTAGCTAATTTACTACACTTCCAG  343

seq1  AAAATTCCTGTATAAAACCAGGTGCTCCTGGACTCATTGCCCTTAAATAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCCTGTATAAAACCAGGTGCTCCTGGACTCATTGCCCTTAAATAA  393

seq1  GACTATGTCATAGCTTTGGGCTTCTCTTTTCATAGTGATTCTATAATTGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATGTCATAGCTTTGGGCTTCTCTTTTCATAGTGATTCTATAATTGT  443

seq1  ATATGTCCTTTCCAGGCATCCTGAAACTGATGCCTCTTGAGTTGGTACAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCCTTTCCAGGCATCCTGAAACTGATGCCTCTTGAGTTGGTACAA  493

seq1  AAATTGTTGGCCCCTGTGGTACATAAGCCTACTATGTTGAGTGGTCTTGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTTGGCCCCTGTGGTACATAAGCCTACTATGTTGAGTGGTCTTGG  543

seq1  TCCTTGGTGTGTATAAGTCTCCCCCCCCCCCGAATGGTAAATTCTTTTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGTGTGTATAAGTCTCCCCCCCCCCCGAATGGTAAATTCTTTTTT  593

seq1  TTAATTAGATATTTTCTTCATTTACATTTCAAATGTTATCCCAAAAGTCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAGATATTTTCTTCATTTACATTTCAAATGTTATCCCAAAAGTCC  643

seq1  CCTATAATTCTTGATAGGAAACCAGAGAAATCACATTCTTGGTGGCTGAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAATTCTTGATAGGAAACCAGAGAAATCACATTCTTGGTGGCTGAG  693

seq1  CAGAGTTGTCACGATGGCACATTGAAGAGAATAGTTTAATGTGGAGGATC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTGTCACGATGGCACATTGAAGAGAATAGTTTAATGTGGAGGATC  743

seq1  TTGTAAGTAGAAGTTTCTGTTCTGTCCCTCAAAGATAGAGGAGCTCAACA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGTAGAAGTTTCTGTTCTGTCCCTCAAAGATAGAGGAGCTCAACA  793

seq1  CATAATCAATATTAAAATGCTTTCTTTGGAATTCCTTTTTGCTGATTCTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATCAATATTAAAATGCTTTCTTTGGAATTCCTTTTTGCTGATTCTG  843

seq1  CATACTATTTTTCATCATGCATCTCTGTGAGAGGACTTGCTTTTATTCAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTATTTTTCATCATGCATCTCTGTGAGAGGACTTGCTTTTATTCAA  893

seq1  AGACAGCAGAGAAGGTGGTTCATATGACCTGTCTATCTCATTTAGCTCTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCAGAGAAGGTGGTTCATATGACCTGTCTATCTCATTTAGCTCTC  943

seq1  AGTTACCTTCTTCGTTTTGATGCATTTTTAAAAAATAGATTGGCTGTGTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACCTTCTTCGTTTTGATGCATTTTTAAAAAATAGATTGGCTGTGTC  993

seq1  CTGTAAACACATATACATTTTAAAGAATGTTTGGTTTGTTGCTATATATA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAACACATATACATTTTAAAGAATGTTTGGTTTGTTGCTATATATA  1043

seq1  GTAATACCAATTCTGTACCTGAAGGTCTAATCCAACAAGTGAATTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATACCAATTCTGTACCTGAAGGTCTAATCCAACAAGTGAATTC  1089