BAC Information

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BAC

Clone NameB6Ng01-076C01
Chromosome17 (Build37)
Map Location 65,732,141 - 65,829,810
singlet/doubletdoublet
Overlap geneE130009J12Rik, LOC668655
Upstream geneLOC100043582, Man2a1, 4930583I09Rik, LOC100043871
Downstream geneLOC674701, Vapa, Txndc2, Rab31, Ppp4r1, Ralbp1, LOC100043873, LOC100043592, Twsg1, Ankrd12, 5430411C19Rik, Ndufv2, ORF19, Ddx11, LOC100043599, LOC100043875, 1110012J17Rik, LOC100043876
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076C01.bB6Ng01-076C01.g
ACCDH892486DH892487
length926997
definitionDH892486|Mus musculus domesticus DNA, BAC clone: B6Ng01-076C01, 5' end.DH892487|Mus musculus domesticus DNA, BAC clone: B6Ng01-076C01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,829,076 - 65,829,810)(65,732,141 - 65,733,155)
sequence
gaattcttgtgtagtattgatctcccagtcagaagcgctggggacacgag
agaggaggtggaaagaaaaatgaggaagaagcaaggtgaagaaagggagg
gaggtgagacagacagacagagggatggaagcagagcttcacgtgggagg
caaagtctgagctgtcaggctacagagagatgtagcgagaccacagaggt
gtccccagagatagggaaagggacagttttcaatagaatgctacaaacaa
aaacttcttagctgtctttttgtttttgtttgttttcttttccaggtgta
gtagtaactaaggacaacctgtcagtcaggtaacattgacgatgaaatca
gggtataacacagcatgagcatgatttattactcctctcagtctcttgtg
aggctgtgccagtgcctggcaaatacagaagtggatgctcacagtcatct
ataggatggaacacagggcccccaatggaggagctagagaaagtacccaa
ggagctaaaggggtctgtaaccctataggaggaacaacaatatgagctaa
acagtgccctccaggagcttgtgtctctagttgcatatgtgccacaggat
ggcttagttggccatcaatgggaggagaggcccttggtactgcgaaagat
catatgccccagtacaggggaatgccagggccatgaatcatgagtgggtg
ggttggggatccagacgtgacgagggtatagagggggtctttagtcagcc
tgacatgtgatcatgcctggacagtgcacaggacaagagccagctggtca
ctcctctctcaatgccagtttagatggcacttgcatgaaaccactaatgt
gaagacagagctgcatttccataggcaaacgtagagattcctccctaata
ctgaggcaagagttttagcctcattt
gaattcactgggttaaggctcttgctacaaacaccattgtctgagtttca
tccatagaacccacatagaggagggggaaatgatgtctacaagctgtcct
ctgaccaccacaagcacacctgagtgtgtgcaacacacatgaacataaat
aactgtaataaaaaatgttgtaaaactaacctttgtgataacctccccca
attttttttaaaaaaaaaaaaagcaatactcagcaaaaagagcaattatg
tattagttcacagttaggtaatttttaatgtgatgataaaactcacattt
taaatataattcacttgtcatacagaagtttcatcaacagttacaagcac
ttgaaatactgtatacttcattatattctttactctgcttatagcttaaa
accccgttaaagtgaagatagcatttctataaaatggatttttaaatcga
agggaatgtacaaacaatggtttttcatttagctacagttgaaaatgttt
tagaattttcattcattgtttttttttattttactttaatgccacgtttc
ataaaacatgaaaactatgtatattaatcaggtaccatattatatttcaa
agcatgtagattttaattaaatggcatacgccaaagccatgacaaagagt
acaaaatatctgaaacacttcagcaaattctatgcaaagtgagagactgt
tcgcaatctctgatatatgtttcataccatccacgactgagttctgagta
ttcccaggcttgttttctttggtttgacttggttttctggagacccacat
agaggaggagagagtggatgcctcaatctgtcctctgacctccacaagca
cacttgtgggtgtgcccgctattgatcttctcattccccatgaaaagaca
cggatatatggatacaagaacaggagcattctgctgatccacagacacac
gttacatcacgaatagcatcatccagagtaatggagggcaaagacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_65829076_65829810
seq2: B6Ng01-076C01.b_46_781 (reverse)

seq1  CCCCCCTATACCCTCGTCCTGCCCTGCTCCCCAACCCACCCACTCCTGAT  50
      |||| |||||||||||||  | |  | |||||||||||||||||| ||||
seq2  CCCCTCTATACCCTCGTCACGTCTGGATCCCCAACCCACCCACTCATGAT  50

seq1  TCATGGCCCTGGCATTCCCCTGTACTGGGGCATATGATC-TTCGCAGTAC  99
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCATGGCCCTGGCATTCCCCTGTACTGGGGCATATGATCTTTCGCAGTAC  100

seq1  CAAGGGCCTCTCCTCCCATTGATGGCCAACTAAGCCATCCTCTGCTACAT  149
      ||||||||||||||||||||||||||||||||||||||||| ||  ||||
seq2  CAAGGGCCTCTCCTCCCATTGATGGCCAACTAAGCCATCCTGTGGCACAT  150

seq1  ATGCAACTAGAGACACAAGCTCCTGGAGGGTACTGTTTAGCTCATATTGT  199
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATGCAACTAGAGACACAAGCTCCTGGAGGGCACTGTTTAGCTCATATTGT  200

seq1  TGTTCCTCCTATAGGGTTACAGACCCCTTTAGCTCCTTGGGTACTTTCTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTCCTATAGGGTTACAGACCCCTTTAGCTCCTTGGGTACTTTCTC  250

seq1  TAGCTCCTCCATTGGGGGCCCTGTGTTCCATCCTATAGATGACTGTGAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCCTCCATTGGGGGCCCTGTGTTCCATCCTATAGATGACTGTGAGC  300

seq1  ATCCACTTCTGTATTTGCCAGGCACTGGCACAGCCTCACAAGAGACTGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTTCTGTATTTGCCAGGCACTGGCACAGCCTCACAAGAGACTGAG  350

seq1  AGGAGTAATAAATCATGCTCATGCTGTGTTATACCCTGATTTCATCGTCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTAATAAATCATGCTCATGCTGTGTTATACCCTGATTTCATCGTCA  400

seq1  ATGTTACCTGACTGACAGGTTGTCCTTAGTTACTACTACACCTGGAAAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACCTGACTGACAGGTTGTCCTTAGTTACTACTACACCTGGAAAAG  450

seq1  AAAACAAACAAAAACAAAAAGACAGCTAAGAAGTTTTTGTTTGTAGCATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAACAAAAACAAAAAGACAGCTAAGAAGTTTTTGTTTGTAGCATT  500

seq1  CTATTGAAAACTGTCCCTTTCCCTATCTCTGGGGACACCTCTGTGGTCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGAAAACTGTCCCTTTCCCTATCTCTGGGGACACCTCTGTGGTCTC  550

seq1  GCTACATCTCTCTGTAGCCTGACAGCTCAGACTTTGCCTCCCACGTGAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATCTCTCTGTAGCCTGACAGCTCAGACTTTGCCTCCCACGTGAAG  600

seq1  CTCTGCTTCCATCCCTCTGTCTGTCTGTCTCACCTCCCTCCCTTTCTTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTTCCATCCCTCTGTCTGTCTGTCTCACCTCCCTCCCTTTCTTCA  650

seq1  CCTTGCTTCTTCCTCATTTTTCTTTCCACCTCCTCTCTCGTGTCCCCAGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTTCTTCCTCATTTTTCTTTCCACCTCCTCTCTCGTGTCCCCAGC  700

seq1  GCTTCTGACTGGGAGATCAATACTACACAAGAATTC  735
      ||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGACTGGGAGATCAATACTACACAAGAATTC  736

seq1: chr17_65732141_65733155
seq2: B6Ng01-076C01.g_66_1062

seq1  GAATTCACTGGGTTAAGGCTCTTGCTACAAACACCATTGTCTGAGTTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGGTTAAGGCTCTTGCTACAAACACCATTGTCTGAGTTTCA  50

seq1  TCCATAGAACCCACATAGAGGAGGGGGAAATGATGTCTACAAGCTGTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAGAACCCACATAGAGGAGGGGGAAATGATGTCTACAAGCTGTCCT  100

seq1  CTGACCACCACAAGCACACCTGAGTGTGTGCAACACACATGAACATAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCACCACAAGCACACCTGAGTGTGTGCAACACACATGAACATAAAT  150

seq1  AACTGTAATAAAAAATGTTGTAAAACTAACCTTTGTGATAACCTCCCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTAATAAAAAATGTTGTAAAACTAACCTTTGTGATAACCTCCCCCA  200

seq1  ATTTTTTTTAAAAAAAAAAAAAGCAATACTCAGCAAAAAGAGCAATTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTAAAAAAAAAAAAAGCAATACTCAGCAAAAAGAGCAATTATG  250

seq1  TATTAGTTCACAGTTAGGTAATTTTTAATGTGATGATAAAACTCACATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTTCACAGTTAGGTAATTTTTAATGTGATGATAAAACTCACATTT  300

seq1  TAAATATAATTCACTTGTCATACAGAAGTTTCATCAACAGTTACAAGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATAATTCACTTGTCATACAGAAGTTTCATCAACAGTTACAAGCAC  350

seq1  TTGAAATACTGTATACTTCATTATATTCTTTACTCTGCTTATAGCTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATACTGTATACTTCATTATATTCTTTACTCTGCTTATAGCTTAAA  400

seq1  ACCCCGTTAAAGTGAAGATAGCATTTCTATAAAATGGATTTTTAAATCGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCGTTAAAGTGAAGATAGCATTTCTATAAAATGGATTTTTAAATCGA  450

seq1  AGGGAATGTAGAAACAATGGTTTTTCATTTAGCTACAGTTGAAAATGTTT  500
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATGTACAAACAATGGTTTTTCATTTAGCTACAGTTGAAAATGTTT  500

seq1  TAGAATTTTCATTCATTGTTTTTTTTTATTTTACTTTAATGCCACGTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTTTCATTCATTGTTTTTTTTTATTTTACTTTAATGCCACGTTTC  550

seq1  ATAAAACATGAAAACTATGTATATTAATCAGGTACCATATTATATTTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACATGAAAACTATGTATATTAATCAGGTACCATATTATATTTCAA  600

seq1  AGCATGTAGATTTTAATTAAATGGCATACGCCAAAGCCATGACAAAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTAGATTTTAATTAAATGGCATACGCCAAAGCCATGACAAAGAGT  650

seq1  ACAAAATATCTGAAACACTTCAGCAAATTCTATGCAAAGTGAGAGACTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATATCTGAAACACTTCAGCAAATTCTATGCAAAGTGAGAGACTGT  700

seq1  TCGCAATCTCTGATATATGTTTCATACCATCCACGACTGAGTTCTGAAAT  750
      |||||||||||||||||||||||||||||||||||||||||||||| | |
seq2  TCGCAATCTCTGATATATGTTTCATACCATCCACGACTGAGTTCTG-AGT  749

seq1  ATTCCCAGGCTTGTTTTCTTTGGTTTGACTTGGTTTTCTGGAGACCCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCAGGCTTGTTTTCTTTGGTTTGACTTGGTTTTCTGGAGACCCACA  799

seq1  TAGAGGAGGAGAGAGTGGATGCCTCCAAGCTGTCCTCTGACCTCCACAAG  850
      |||||||||||||||||||||||| ||| |||||||||||||||||||||
seq2  TAGAGGAGGAGAGAGTGGATGCCT-CAATCTGTCCTCTGACCTCCACAAG  848

seq1  CACACTTGTGGGTGTGCAGCGCACATTGATCATCTCAATTCCACCAAGAA  900
      |||||||||||||||||  |||  ||||||| |||| ||||| ||| |  
seq2  CACACTTGTGGGTGTGC-CCGC-TATTGATCTTCTC-ATTCC-CCATG--  892

seq1  AAAAGACACAGAATAATAATGGATACAAAAACAGGAGCCATTCGGCTGCA  950
      ||||||||| | |||   |||||||||| |||||||| ||||| |||| |
seq2  AAAAGACAC-GGATA--TATGGATACAAGAACAGGAG-CATTCTGCTG-A  937

seq1  TCCAAGAAAACACACGTTACCATCAAGAATAAGCATCATCCCAGAGTAAG  1000
      ||||   | |||||||||| ||||| |||| |||||||| ||||||||| 
seq2  TCCA--CAGACACACGTTA-CATCACGAAT-AGCATCAT-CCAGAGTAAT  982

seq1  GGAGGGAAAAGACAT  1015
      |||||| ||||||||
seq2  GGAGGGCAAAGACAT  997