BAC Information

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BAC

Clone NameB6Ng01-076C02
Chromosome17 (Build37)
Map Location 22,205,161 - 22,206,310
singlet/doubletsinglet
Overlap geneEG665844
Upstream geneLOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010
Downstream geneEG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076C02.bB6Ng01-076C02.g
ACCDH892488DH892489
length1,2521,132
definitionDH892488|Mus musculus domesticus DNA, BAC clone: B6Ng01-076C02, 5' end.DH892489|Mus musculus domesticus DNA, BAC clone: B6Ng01-076C02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccagtcctgacttccttagtgatgaacagcagtatggaagtgtaa
gccgaataaaccctttcctccccaacttgcttcttggtcatgatgtttgt
gcaggaatagagaccctgactaagacacaggtaaatggagattgttacat
gacctaagagccattaatgcacaaatgcaagttatgggtcctgtacaaag
aggactccccctactctcggctctacctaaggattggagaattatagtag
tagatattaaagattgtttcttttccattccattgaataaggaagatcga
cctagatttgcatttaccctgccttctattaatcatatggagcctgataa
aaggtatcaatggtgggtattgccccaaggaatggcaaatagccctacca
tatgtcagttatacataggaaaagctttgcaaccagttagagatggtttc
ccctccttaaaaatttgtcactatatggacgatattgtgatttgtggacc
tgaagaagaaagtatacagcaagcttatggcttgcttaatgaaactttaa
aaaataatggcttgattgttgcaccagaaaaggtacagcagtctaatgtt
agtcattttttaggagccactattactctatggtgtgtcaccccacaaaa
gattggtataagaaaagatcatctaaagacattaaatgattttcaaaaat
tattaggagatataaattggattagaccttatttaaggatccctacttcg
gaattaaaacctttatttcaaattttagaaggagaatcacttattacctc
attgagacaattaacacctgaggcttctgatgttcttaggaaggtggaaa
gagctatccaaaaggcacagttagatcgtataaatgagcaagaacctttg
tacctatgcatattaagaaccataaatttgctaactgctgtgttatggca
agatggtcctttagtatggatacatccacatatatcccctaataagacta
tagagcattatcccaccatggtggcaaatatggcccataaaggtataaaa
agatcatttactcactttggaaaaatgcctgatagcattatgtccctaat
acttgcctctaaaatgccaaatgtaatgttgcgaactatagatgaatagg
ccattcttagaatgcagttattctgctatgataaatcctatctaactctt
atcctctagccatgcatcatgatatctcaaggtaacgcgctaaatatccc
ct
gaattctctgatgtgctctaaacgagcatttctgggcaaaacatttgtca
cattcactacatttgtaaggtttctctcctgtatgaattctctgatgtct
tctaagatcaccaacttgactgaaacatttctcacattcactacatttgt
aaggtttcttgcctgcatgacgcatctgatgaatactaagactgcctttt
tgggtaaaggatttgtcacattcactacatttgtaaggtttctctcctgt
atgagttatctgatgttttctaaaaaagtatttcttggcaaaacattttg
cacattcactacatttgtaaggtttctttccacttttggtttgtttcaac
atgaggatttctttagagtcaaaaacatcatcaagctttgcactattgta
ttctttctttcctatgttgattccttgattttgactaatggtagagcaca
aattgaaacagtttacatggtttttatatttgcaaggttctctgttgttt
tcagtttcgtgtctgcttaggtttgatgattcaacagatgtagacctgag
gttagttttataaggtatacttccggtgaactcatggatgactttgccaa
gctcatgacattcataagatttcacttggatatttgcatgcttgtggaca
atatgttgtaggtcttgatccaacatgttctcaaattttggacacatgca
gtgattctctgaaaaaaaggaatgcatttagagatgacagggattagtgg
atgaataagacaatatcccatgtttcctgaaattttctaatgtaaattag
tgattctcaaggatggaactctcaaaagtggactttcttgtttcacaatc
attacatggatgcttagagcagtctcaaaattcatgcataacaaatgaca
ggaaacattagtctctattttttatttaccaccttgcttggcagaaagta
aaagatacatgatgtagaaaaaaaggactttgagaatgatctccctgaat
gaccatgtaaaaaaagtttctctatttctgttatgttttgtgacagagta
acaactgtagcttggcagctagattcattatgtaatccacatgccatgga
ctccatgattaaagcatgctgtacaggactaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_22205161_22206310
seq2: B6Ng01-076C02.g_67_1198

seq1  GAATTCTCTGATGTGCTCTAAACGAGCATTTCTGGGCAAAACATTTGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGATGTGCTCTAAACGAGCATTTCTGGGCAAAACATTTGTCA  50

seq1  CATTCACTACATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACTACATTTGTAAGGTTTCTCTCCTGTATGAATTCTCTGATGTCT  100

seq1  TCTAAGATCACCAACTTGACTGAAACATTTCTCACATTCACTACATTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGATCACCAACTTGACTGAAACATTTCTCACATTCACTACATTTGT  150

seq1  AAGGTTTCTTGCCTGCATGACGCATCTGATGAATACTAAGACTGCCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTCTTGCCTGCATGACGCATCTGATGAATACTAAGACTGCCTTTT  200

seq1  TGGGTAAAGGATTTGTCACATTCACTACATTTGTAAGGTTTCTCTCCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAAAGGATTTGTCACATTCACTACATTTGTAAGGTTTCTCTCCTGT  250

seq1  ATGAGTTATCTGATGTTTTCTAAAAAAGTATTTCTTGGCAAAACATTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTATCTGATGTTTTCTAAAAAAGTATTTCTTGGCAAAACATTTTG  300

seq1  CACATTCACTACATTTGTAAGGTTTCTTTCCACTTTTGGTTTGTTTCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCACTACATTTGTAAGGTTTCTTTCCACTTTTGGTTTGTTTCAAC  350

seq1  ATGAGGATTTCTTTAGAGTCAAAAACATCATCAAGCTTTGCACTATTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGATTTCTTTAGAGTCAAAAACATCATCAAGCTTTGCACTATTGTA  400

seq1  TTCTTTCTTTCCTATGTTGATTCCTTGATTTTGACTAATGGTAGAGCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTTCCTATGTTGATTCCTTGATTTTGACTAATGGTAGAGCACA  450

seq1  AATTGAAACAGTTTACATGGTTTTTATATTTGCAAGGTTCTCTGTTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAACAGTTTACATGGTTTTTATATTTGCAAGGTTCTCTGTTGTTT  500

seq1  TCAGTTTCGTGTCTGCTTAGGTTTGATGATTCAACAGATGTAGACCTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTCGTGTCTGCTTAGGTTTGATGATTCAACAGATGTAGACCTGAG  550

seq1  GTTAGTTTTATAAGGTATACTTCCGGTGAACTCATGGATGACTTTGCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTTTATAAGGTATACTTCCGGTGAACTCATGGATGACTTTGCCAA  600

seq1  GCTCATGACATTCATAAGATTTCACTTGGATATTTGCATGCTTGTGGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATGACATTCATAAGATTTCACTTGGATATTTGCATGCTTGTGGACA  650

seq1  ATATGTTGTAGGTCTTGATCCAACATGTTCTCAAATTTTGGACACATGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTGTAGGTCTTGATCCAACATGTTCTCAAATTTTGGACACATGCA  700

seq1  GTGATTCTCTGAAAAAAAGGAATGCATTTAGAGATGACAGGGATTAGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTCTCTGAAAAAAAGGAATGCATTTAGAGATGACAGGGATTAGTGG  750

seq1  ATGAATAAGACAATATCCCATGTTTCCTGAAATTTTCTAATGTAAATTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAAGACAATATCCCATGTTTCCTGAAATTTTCTAATGTAAATTAG  800

seq1  TGATTCTCAAGGATGGAACTCTCAAAAGTGGACTTTCTTGTTTCACAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTCAAGGATGGAACTCTCAAAAGTGGACTTTCTTGTTTCACAATC  850

seq1  ATTACATGGATGCTTAGAGCAGTCTCAAAATTCATGCATAACAAATGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATGGATGCTTAGAGCAGTCTCAAAATTCATGCATAACAAATGACA  900

seq1  GGAAACATTAGTCTCTATTTTTTATTTACCACCTTGCTTGGCAGAAAGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACATTAGTCTCTATTTTTTATTTACCACCTTGCTTGGCAGAAAGTA  950

seq1  AAAAGAATACATGATGTAGAAAAAAAGGACTTTGAGAATGAATCTCCCTG  1000
      |||   |||||||||||||||||||||||||||||||||| |||||||||
seq2  AAA--GATACATGATGTAGAAAAAAAGGACTTTGAGAATG-ATCTCCCTG  997

seq1  AATGACCATGTAAAAAAAAAGTTTCTCTATTTTCTTGTTTATGTTTTGTG  1050
      |||||||||||  |||||||||||||||| |||||   ||||||||||||
seq2  AATGACCATGT--AAAAAAAGTTTCTCTA-TTTCT--GTTATGTTTTGTG  1042

seq1  ACAGAGTAACAAAGTGTAGCTTGGGCCAGCTAGGAATTCATTATGTAATC  1100
      |||||||||| || ||||||||||  |||||||  |||||||||||||||
seq2  ACAGAGTAAC-AACTGTAGCTTGG--CAGCTAG--ATTCATTATGTAATC  1087

seq1  CACATTGGCATGGAACTCATGATATAAAAGCCATGCTGTACCAGGACTAA  1150
      |||| || ||||||   |||||| ||||   ||||||||| |||||||||
seq2  CACA-TGCCATGGACTCCATGAT-TAAA--GCATGCTGTA-CAGGACTAA  1132