BAC Information

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BAC

Clone NameB6Ng01-076D05
Chromosome17 (Build37)
Map Location 66,251,319 - 66,388,007
singlet/doubletdoublet
Overlap geneLOC100043873, LOC100043592, Twsg1, Ankrd12
Upstream geneE130009J12Rik, LOC668655, LOC674701, Vapa, Txndc2, Rab31, Ppp4r1, Ralbp1
Downstream gene5430411C19Rik, Ndufv2, ORF19, Ddx11, LOC100043599, LOC100043875, 1110012J17Rik, LOC100043876, Rab12, 9130404H23Rik, Ptprm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076D05.bB6Ng01-076D05.g
ACCDH892538DH892539
length1,138989
definitionDH892538|Mus musculus domesticus DNA, BAC clone: B6Ng01-076D05, 5' end.DH892539|Mus musculus domesticus DNA, BAC clone: B6Ng01-076D05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,251,319 - 66,252,467)(66,387,022 - 66,388,007)
sequence
gaattcctaaatgttgtcctgtggcctccacactagcaccctggtgtgaa
cacacacacacacacaaaaccatatacacacacaaacatatatacacaca
cacaaacatacacaaacatatatacacatacaaacatacacagacacata
tacatgagtgacaaaatgtaaaaaagaaaaataaacagaatcaaagcata
gtttaaaatgtttctgtagtataaatgataataatatgtaccctattgaa
aagttttcaagtttaaaacgtatgctatggggccagacatggaggagcac
gcctttaatcccagtacttgagaggcagaggcaggagagagagatttctg
tgagttcaaggtcagtcttgtgttgaaactctggcgagtcaaagctaaat
agtcttaaaaaataaaataagacaaagtaaaacatggttctctgtacagt
ggagtctggagctgagagctgtggaaacatttacgtccgacagaatcagg
accagagtcgaagtcagtgagtcacaagaaagaaggctgaaatacaagtg
ctattccaaaccaccaagaaaggctaaaaataacttctgaaaaagaagaa
aacggcaatcgtgtgagctaaaccatatttcagagcaaaaaaaaaaaaaa
aaaaaaaaaaaatgagagttaactgccaggggagtagaaacagaagcttt
gatctttcaggagagatttaggataaaaaggattcaggaggtaggttggt
gtttttaatcaaaaattcggctatacttcaattttaaataatttatgggg
gtacgtggaaagtttcggagggaggaaaggtaagggaaaaagtgatataa
ttacattataatttcaaaatttatctaaaatttttacatatataatattg
ctaaacatttttctttaaatgagaaaaggttaggttgaattgtatttgca
ttgtggcatcagaggtaggtcagaggagactgacttcaattgctatttgt
tgttgctcaaaatcacacattgtgactatagcctttgtttctccatagtg
acaatggaaacttttcttcattgaattttctcttatcaacattggggttt
agctttgttgttgtttctgttggttttaagtttatttt
gaattcctaaaagaagaagacaaagtgtcttctacctgtagcatccagtg
cagactgagttcccccaacgcagatggccgtgcgtgctgagctgctgggg
gctcggaacagccaaatctgacttgggatggtttactcttttaatctttg
agaaaggttcaggagtttttgtatctttgcagggcatggttaacgccaag
ccacacagaatctttagtttgtgcatagttagctttgattggtattgttc
catgttaagctgtccaatcgctgcagtgcattgatggtggcttttcttca
gtaattgttctatgtggtgactttaaatgctcagcctcttgcaaaattgt
gcaagtcattgctagaataagggggataattatatggctcattggtatgt
agtattagcagcaatattagatattgtgtgaaagagaagttttaaagata
taatacagttggcttcttgtcaccagattcaattgatcataaacaagaat
actcagggggaaaaaaccaacagaatctttttcttgtcattattccctaa
acaatgtagtatagcaactgtttcataaaattaacataatattttctgtt
atacgtaatttatacataattcaaaaggatatgggaggagacacataggt
tgtgtacaaatcttgaatcctttttcctgagagaattgagcagttgcaag
ttttattacccatagggagtcccagaacagtccttagagagaccaagggg
ggagctgtagctaggactgtttgaattggtaaggacattacactttaata
aagtgcatagttaaaactaaaatgttactagtagtttttttctgatggta
gaatcaagaatatatttttctagatctttcagagaaaatactgcttacgt
aagttcagcatttttgtctggcttccactagtaaacacacgttatctgtt
tgcataccatctgtcacagaaggttggtcttgattactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_66251319_66252467
seq2: B6Ng01-076D05.b_46_1183

seq1  GAATTCCTAAATGTTGTCCTGTGGCCTCCACACTAGCACCCTGGTGTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAATGTTGTCCTGTGGCCTCCACACTAGCACCCTGGTGTGAA  50

seq1  CACACACACACACACAAAACCATATACACACACAAACATATATACACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACAAAACCATATACACACACAAACATATATACACACA  100

seq1  CACAAACATACACAAACATATATACACATACAAACATACACAGACACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACATACACAAACATATATACACATACAAACATACACAGACACATA  150

seq1  TACATGAGTGACAAAATGTAAAAAAGAAAAATAAACAGAATCAAAGCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGAGTGACAAAATGTAAAAAAGAAAAATAAACAGAATCAAAGCATA  200

seq1  GTTTAAAATGTTTCTGTAGTATAAATGATAATAATATGTACCCTATTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAATGTTTCTGTAGTATAAATGATAATAATATGTACCCTATTGAA  250

seq1  AAGTTTTCAAGTTTAAAACGTATGCTATGGGGCCAGACATGGAGGAGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTCAAGTTTAAAACGTATGCTATGGGGCCAGACATGGAGGAGCAC  300

seq1  GCCTTTAATCCCAGTACTTGAGAGGCAGAGGCAGGAGAGAGAGATTTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAATCCCAGTACTTGAGAGGCAGAGGCAGGAGAGAGAGATTTCTG  350

seq1  TGAGTTCAAGGTCAGTCTTGTGTTGAAACTCTGGCGAGTCAAAGCTAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCAAGGTCAGTCTTGTGTTGAAACTCTGGCGAGTCAAAGCTAAAT  400

seq1  AGTCTTAAAAAATAAAATAAGACAAAGTAAAACATGGTTCTCTGTACAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTAAAAAATAAAATAAGACAAAGTAAAACATGGTTCTCTGTACAGT  450

seq1  GGAGTCTGGAGCTGAGAGCTGTGGAAACATTTACGTCCGACAGAATCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCTGGAGCTGAGAGCTGTGGAAACATTTACGTCCGACAGAATCAGG  500

seq1  ACCAGAGTCGAAGTCAGTGAGTCACAAGAAAGAAGGCTGAAATACAAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGTCGAAGTCAGTGAGTCACAAGAAAGAAGGCTGAAATACAAGTG  550

seq1  CTATTCCAAACCACCAAGAAAGGCTAAAAATAACTTCTGAAAAAGAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCCAAACCACCAAGAAAGGCTAAAAATAACTTCTGAAAAAGAAGAA  600

seq1  AACGGCAATCGTGTGAGCTAAACCATATTTCAGAGCAAAAAAAAAAAAAA  650
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AACGGCAATCGTGTGAGCTAAACCATATTTCAGAGC-AAAAAAAAAAAAA  649

seq1  AAAAAAAAAAAAATGAGAGTTAACTGCCAGGGGAGTAGAAACAGAAGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAATGAGAGTTAACTGCCAGGGGAGTAGAAACAGAAGCTT  699

seq1  TGATCTTTCAGGAGAGATTTAGGATAAAAAGGATTCAGGAGGTAGGTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTTCAGGAGAGATTTAGGATAAAAAGGATTCAGGAGGTAGGTTGG  749

seq1  TGTTTTTAATCAAAAATTCGGCTATACTTCAATTTTAAATAATTTATGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTAATCAAAAATTCGGCTATACTTCAATTTTAAATAATTTATGGG  799

seq1  GGTACGTGGAAAGTTTCGGAGGGAGGAAAGGTAAGGGAAAAAGTGATATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACGTGGAAAGTTTCGGAGGGAGGAAAGGTAAGGGAAAAAGTGATATA  849

seq1  ATTACATTATAATCTCAAAATTTATCTAAAATTTTTACATATATAATATT  900
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATTACATTATAATTTCAAAATTTATCTAAAATTTTTACATATATAATATT  899

seq1  GCTAAACATTTTTCCTTAAATGAGAAAAGGTTAGGTTGAAATGTATTTGC  950
      |||||||||||||| ||||||||||||||||||||||||| |||||||||
seq2  GCTAAACATTTTTCTTTAAATGAGAAAAGGTTAGGTTGAATTGTATTTGC  949

seq1  ATTGTGGCATCAGAGGTAGGTCAAGAGGAGACTGACTTCAAATTGCTATT  1000
      |||||||||||||||||||||| |||||||||||||||| |||||||| |
seq2  ATTGTGGCATCAGAGGTAGGTC-AGAGGAGACTGACTTC-AATTGCTA-T  996

seq1  TTGTTGTTGCTCAGAAATCACACATTGTGACTATAGCCTTTGTTTTCTCC  1050
      ||||||||||||| |||||||||||||||||||||||||||| |||||||
seq2  TTGTTGTTGCTCA-AAATCACACATTGTGACTATAGCCTTTG-TTTCTCC  1044

seq1  ATAGGTGACAAATGAAACTATCTTTCATTGTATTTTCTC-TATCAGCATT  1099
      ||| |||||||  |||||| |  ||||||| |||||||| ||||| ||||
seq2  ATA-GTGACAATGGAAACTTTTCTTCATTGAATTTTCTCTTATCAACATT  1093

seq1  GTGGGTTTGGTCTTTTGTTTGTTTGTTTCTGTTGGTTTTTTAGTTATTTT  1149
      | |||||| |   ||||||   |||||||||||||||||    |||||||
seq2  G-GGGTTTAG--CTTTGTT--GTTGTTTCTGTTGGTTTTAAGTTTATTTT  1138

seq1: chr17_66387022_66388007
seq2: B6Ng01-076D05.g_69_1057 (reverse)

seq1  AAGTAATCAAGA-CAACC-TCTGTGACAGATGGTATGCAAACAGATAACG  48
      |||||||||||| ||||| |||||||||||||||||||||||||||||||
seq2  AAGTAATCAAGACCAACCTTCTGTGACAGATGGTATGCAAACAGATAACG  50

seq1  TGTGTTTACTAGTGGAAGCCAGACAAAAATGCTGAACTTACGTAAGCAGT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTACTAGTGGAAGCCAGACAAAAATGCTGAACTTACGTAAGCAGT  100

seq1  ATTTTCTCTGAAAGATCTAGAAAAATATATTCTTGATTCTACCATCAGAA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCTGAAAGATCTAGAAAAATATATTCTTGATTCTACCATCAGAA  150

seq1  AAAAACTACTAGTAACATTTTAGTTTTAACTATGCACTTTATTAAAGTGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTACTAGTAACATTTTAGTTTTAACTATGCACTTTATTAAAGTGT  200

seq1  AATGTCCTTACCAATTCAAACAGTCCTAGCTACAGCT-CCCCCTTGGTCT  247
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AATGTCCTTACCAATTCAAACAGTCCTAGCTACAGCTCCCCCCTTGGTCT  250

seq1  CTCTAAGGACTGTTCTGGGACTCCCTATGGGTAATAAAACTTGCAACTGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGGACTGTTCTGGGACTCCCTATGGGTAATAAAACTTGCAACTGC  300

seq1  TCAATTCTCTCAGGAAAAAGGATTCAAGATTTGTACACAACCTATGTGTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCTCTCAGGAAAAAGGATTCAAGATTTGTACACAACCTATGTGTC  350

seq1  TCCTCCCATATCCTTTTGAATTATGTATAAATTACGTATAACAGAAAATA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCATATCCTTTTGAATTATGTATAAATTACGTATAACAGAAAATA  400

seq1  TTATGTTAATTTTATGAAACAGTTGCTATACTACATTGTTTAGGGAATAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTAATTTTATGAAACAGTTGCTATACTACATTGTTTAGGGAATAA  450

seq1  TGACAAGAAAAAGATTCTGTTGGTTTTTTCCCCCTGAGTATTCTTGTTTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGAAAAAGATTCTGTTGGTTTTTTCCCCCTGAGTATTCTTGTTTA  500

seq1  TGATCAATTGAATCTGGTGACAAGAAGCCAACTGTATTATATCTTTAAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAATTGAATCTGGTGACAAGAAGCCAACTGTATTATATCTTTAAAA  550

seq1  CTTCTCTTTCACACAATATCTAATATTGCTGCTAATACTACATACCAATG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTTCACACAATATCTAATATTGCTGCTAATACTACATACCAATG  600

seq1  AGCCATATAATTATCCCCCTTATTCTAGCAATGACTTGCACAATTTTGCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATATAATTATCCCCCTTATTCTAGCAATGACTTGCACAATTTTGCA  650

seq1  AGAGGCTGAGCATTTAAAGTCACCACATAGAACAATTACTGAAGAAAAGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTGAGCATTTAAAGTCACCACATAGAACAATTACTGAAGAAAAGC  700

seq1  CACCATCAATGCACTGCAGCGATTGGACAGCTTAACATGGAACAATACCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCAATGCACTGCAGCGATTGGACAGCTTAACATGGAACAATACCA  750

seq1  ATCAAAGCTAACTATGCACAAACTAAAGATTCTGTGTGGCTTGGCGTTAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGCTAACTATGCACAAACTAAAGATTCTGTGTGGCTTGGCGTTAA  800

seq1  CCATGCCCTGCAAAGATACAAAAACTCCTGAACCTTTCTCAAAGATTAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCCCTGCAAAGATACAAAAACTCCTGAACCTTTCTCAAAGATTAAA  850

seq1  AGAGTAAACCATCCCAAGTCAGATTTGGCTGTTCCGAGCCCCCAGCAGCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAACCATCCCAAGTCAGATTTGGCTGTTCCGAGCCCCCAGCAGCT  900

seq1  CAGCACGCACGGCCATCTGCGTTGGGGGAACTCAGTCTGCACTGGATGCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACGCACGGCCATCTGCGTTGGGGGAACTCAGTCTGCACTGGATGCT  950

seq1  ACAGGTAGAAGACACTTTGTCTTCTTCTTTTAGGAATTC  986
      |||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTAGAAGACACTTTGTCTTCTTCTTTTAGGAATTC  989