BAC Information

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BAC

Clone NameB6Ng01-076D12
Chromosome17 (Build37)
Map Location 25,853,729 - 26,001,503
singlet/doubletdoublet
Overlap geneGng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik
Upstream geneRnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396
Downstream gene0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076D12.bB6Ng01-076D12.g
ACCDH892548DH892549
length792900
definitionDH892548|Mus musculus domesticus DNA, BAC clone: B6Ng01-076D12, 5' end.DH892549|Mus musculus domesticus DNA, BAC clone: B6Ng01-076D12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,853,729 - 25,854,520)(26,000,605 - 26,001,503)
sequence
gaattctgcgggatgccccccagcctcctaaagtggacaacactgaaggt
cacctgcaccaggtgggctgcaagaccacagtgggaagtgctctgccccc
accccctcttctcagctgcctgcattggagtgccctgcataggagggccc
tgaccagagaagccttgttgggtggggcatattttgctgtttagggctct
ggtcccagtatcacaagattgtcaaactgggttgccagcagttgtagctg
acccaggagagacgggactagctcccactgctgcatgtcccaccccaggg
gagacctgccaaagctgtaggagcagcccagggagctcttggggtcagcc
caaccctgtaaaggcggtaccaaggccccaggtggcaagagtgggcgggg
cggctgcctgggctccccggactcggacagcccagcctcactccacagat
ccctcggcccttgtcatctctgcttttgctgtctcctccaaaagtaagtc
cgatgaacagaaacctcacactgagggggaaacagactccagggctctag
ggcttgaccaggtggggcccctaggctaattctaactactgggaccaggg
caactgcctccgggcctcaggggcggggcggccgacagatcgagtccagc
ggcgcaggagccatcgctgcgcgacgggggcgcgtctgtcctgcgccgtg
cgcgccgcccgcagtgcccgtgtgcgccgccgtgcgcctggccgggtgcg
tctcgggggtgcaccggcggccggtctcctgcggcggcagca
gaattccagtacagtggccatggcttggccttgtccttccccacaatacc
ctgactcctagcaggtcacgggctagacttttccttggctctctgcctgg
tcatgtccattccttgagctgggctggagtgcaaggtggcccccaggtgc
tggggtgggagggacaccaggggcccggttcattctaactgttccttccc
ccacagcctggcagcaggtagagcgacaactggatggcggccctgccgat
gagagtggcccacggcctgtgcagtatgtggagagcactcctgatccccg
gctacagagtgagccttctcctatgcctcaaatccctaaagaaccctcta
taccaggtagcctcaggtagttggggaaggaggtgctgggtcagagtctc
ctgttttccattaattgctgtgcttagagtccagattagggggtgtgatc
agctagagggcagaggtaccagccagcttgaaaagcagcatcactgcctg
acatttattctacccacagactttgtacctattgacctcgatgagtggtg
ggcacagcagtttctggctaaaatcaccaactgttcctagcagctgtccg
ggaaggaatgttgccatagtggaccctttgccagaagaggaccatggtgc
gccgatccaccttgtggcctggctgggtaccggccacacctgaagtgcca
acatttggacttttgcacctgttgttcccttggcttggctgtcccaagct
gccagagccaggggccaacctgtctaacctcagtcctgctcacttgtgcc
cagggaccagcccctggggctggcaaggaggagttcacgctaataaagtt
gagaaactgccctttcgggtgttggtgattggtgaatggtgggggatgtt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_25853729_25854520
seq2: B6Ng01-076D12.b_42_833

seq1  GAATTCTGCGGGATGCCCCCCAGCCTCCCATAAGTGGACAACACTGAAGG  50
      |||||||||||||||||||||||||||| | |||||||||||||||||||
seq2  GAATTCTGCGGGATGCCCCCCAGCCTCCTA-AAGTGGACAACACTGAAGG  49

seq1  TCACCTGCACCAGGTGGGCTGCAAGACCACAGTGGGAAGTGCTCTGCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGCACCAGGTGGGCTGCAAGACCACAGTGGGAAGTGCTCTGCCCC  99

seq1  CACCCCCTCTTCTCAGCTGCCTGCATTGGAGTGCCCTGCATAGGAGGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCTCTTCTCAGCTGCCTGCATTGGAGTGCCCTGCATAGGAGGGCC  149

seq1  CTGACCAGAGAAGCCTTGTTGGGTGGGGCATATTTTGCTGTTTAGGGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCAGAGAAGCCTTGTTGGGTGGGGCATATTTTGCTGTTTAGGGCTC  199

seq1  TGGTCCCAGTATCACAAGATTGTCAAACTGGGTTGCCAGCAGTTGTAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCAGTATCACAAGATTGTCAAACTGGGTTGCCAGCAGTTGTAGCT  249

seq1  GACCCAGGAGAGACGGGACTAGCTCCCACTGCTGCATGTCCCACCCCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGGAGAGACGGGACTAGCTCCCACTGCTGCATGTCCCACCCCAGG  299

seq1  GGAGACCTGCCAAAGCTGTAGGAGCAGCCCAGGGAGCTCTTGGGGTCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACCTGCCAAAGCTGTAGGAGCAGCCCAGGGAGCTCTTGGGGTCAGC  349

seq1  CCAACCCTGTAAAGGCGGTACCAAGGCCCCAGGTGGCAAGAGTGGGCGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCCTGTAAAGGCGGTACCAAGGCCCCAGGTGGCAAGAGTGGGCGGG  399

seq1  GCGGCTGCCTGGGCTCCCCGGACTCGGACAGCCCAGCCTCACTCCACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCTGCCTGGGCTCCCCGGACTCGGACAGCCCAGCCTCACTCCACAGA  449

seq1  TCCCTCGGCCCTTGTCATCTCTGCTTTTGCTGTCTCCTCCAAAAGTAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCGGCCCTTGTCATCTCTGCTTTTGCTGTCTCCTCCAAAAGTAAGT  499

seq1  CCGATGAACAGAAACCTCACACTGAGGGGGAAACAGACTCCAGGGCTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATGAACAGAAACCTCACACTGAGGGGGAAACAGACTCCAGGGCTCTA  549

seq1  GGGCTTGACCAGGTGGGGCCCCTAGGCTAATTCTAACTACTGGGACCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTGACCAGGTGGGGCCCCTAGGCTAATTCTAACTACTGGGACCAGG  599

seq1  GCAACTGCCTCCGGGCCTCAGGGGCGGGGCGGCCGACAGATCGAGTCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGCCTCCGGGCCTCAGGGGCGGGGCGGCCGACAGATCGAGTCCAG  649

seq1  CGGCGCAGGAGCCATCGCTGCGCGACGGGGGCGCGTCTGTCCTGCGCCGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCGCAGGAGCCATCGCTGCGCGACGGGGGCGCGTCTGTCCTGCGCCGT  699

seq1  GCGCGCCGCCCGCAGTGCCCGTGTGCGCCGCCGTGCGCCTGGCCGGGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCGCGCCGCCCGCAGTGCCCGTGTGCGCCGCCGTGCGCCTGGCCGGGTGC  749

seq1  GTCTC-GGGGTGCACCGGCGGCCGGGCTCCGGCGGCGGCAGCA  792
      ||||| ||||||||||||||||||| |||| ||||||||||||
seq2  GTCTCGGGGGTGCACCGGCGGCCGGTCTCCTGCGGCGGCAGCA  792

seq1: chr17_26000605_26001503
seq2: B6Ng01-076D12.g_71_969 (reverse)

seq1  ACATCCCCCACCATTCACCAATCACCAACACCCGAAAGGGCAGTTTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCCCCACCATTCACCAATCACCAACACCCGAAAGGGCAGTTTCTCA  50

seq1  ACTTTATTAGCCTGAACTCCTCCCTGCCAGCCCCAGGGGCTGGTCCCTGG  100
      ||||||||||| ||||||||||| ||||||||||||||||||||||||||
seq2  ACTTTATTAGCGTGAACTCCTCCTTGCCAGCCCCAGGGGCTGGTCCCTGG  100

seq1  GCAC-AGTGAGCAGGACTGAGGTTAGACAGGTTTGGCCCCTGGCTCTGGC  149
      |||| |||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCACAAGTGAGCAGGACTGAGGTTAGACAGG-TTGGCCCCTGGCTCTGGC  149

seq1  AGCTTGGGACAGCCAAGCCAAGGGAACAACAGGTGCAAAAGTCCAAATGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGGACAGCCAAGCCAAGGGAACAACAGGTGCAAAAGTCCAAATGT  199

seq1  TGGCACTTCAGGTGTGGCCGGTACCCAGCCAGGCCACAAGGTGGATCGGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTTCAGGTGTGGCCGGTACCCAGCCAGGCCACAAGGTGGATCGGC  249

seq1  GCACCATGGTCCTCTTCTGGCAAAGGGTCCACTATGGCAACATTCCTTCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCATGGTCCTCTTCTGGCAAAGGGTCCACTATGGCAACATTCCTTCC  299

seq1  CGGACAGCTGCTAGGAACAGTTGGTGATTTTAGCCAGAAACTGCTGTGCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACAGCTGCTAGGAACAGTTGGTGATTTTAGCCAGAAACTGCTGTGCC  349

seq1  CACCACTCATCGAGGTCAATAGGTACAAAGTCTGTGGGTAGAATAAATGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTCATCGAGGTCAATAGGTACAAAGTCTGTGGGTAGAATAAATGT  399

seq1  CAGGCAGTGATGCTGCTTTTCAAGCTGGCTGGTACCTCTGCCCTCTAGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGTGATGCTGCTTTTCAAGCTGGCTGGTACCTCTGCCCTCTAGCT  449

seq1  GATCACACCCCCTAATCTGGACTCTAAGCACAGCAATTAATGGAAAACAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACACCCCCTAATCTGGACTCTAAGCACAGCAATTAATGGAAAACAG  499

seq1  GAGACTCTGACCCAGCACCTCCTTCCCCAACTACCTGAGGCTACCTGGTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCTGACCCAGCACCTCCTTCCCCAACTACCTGAGGCTACCTGGTA  549

seq1  TAGAGGGTTCTTTAGGGATTTGAGGCATAGGAGAAGGCTCACTCTGTAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGGTTCTTTAGGGATTTGAGGCATAGGAGAAGGCTCACTCTGTAGC  599

seq1  CGGGGATCAGGAGTGCTCTCCACATACTGCACAGGCCGTGGGCCACTCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGATCAGGAGTGCTCTCCACATACTGCACAGGCCGTGGGCCACTCTC  649

seq1  ATCGGCAGGGCCGCCATCCAGTTGTCGCTCTACCTGCTGCCAGGCTGTGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGCAGGGCCGCCATCCAGTTGTCGCTCTACCTGCTGCCAGGCTGTGG  699

seq1  GGGAAGGAACAGTTAGAATGAACCGGGCCCCTGGTGTCCCTCCCACCCCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGAACAGTTAGAATGAACCGGGCCCCTGGTGTCCCTCCCACCCCA  749

seq1  GCACCTGGGGGCCACCTTGCACTCCAGCCCAGCTCAAGGAATGGACATGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTGGGGGCCACCTTGCACTCCAGCCCAGCTCAAGGAATGGACATGA  799

seq1  CCAGGCAGAGAGCCAAGGAAAAGTCTAGCCCGTGACCTGCTAGGAGTCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCAGAGAGCCAAGGAAAAGTCTAGCCCGTGACCTGCTAGGAGTCAG  849

seq1  GGTATTGTGGGGAAGGACAAGGCCAAGCCATGGCCACAGTACTGGAATTC  899
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGTATTGTGGGGAAGGACAAGGCCAAGCCATGGCCACTGTACTGGAATTC  899