BAC Information

Click to search

BAC

Clone NameB6Ng01-076K24
Chromosome17 (Build37)
Map Location 66,672,569 - 66,792,929
singlet/doubletdoublet
Overlap gene1110012J17Rik, LOC100043876
Upstream geneE130009J12Rik, LOC668655, LOC674701, Vapa, Txndc2, Rab31, Ppp4r1, Ralbp1, LOC100043873, LOC100043592, Twsg1, Ankrd12, 5430411C19Rik, Ndufv2, ORF19, Ddx11, LOC100043599, LOC100043875
Downstream geneRab12, 9130404H23Rik, Ptprm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076K24.bB6Ng01-076K24.g
ACCDH892878DH892879
length1,0841,071
definitionDH892878|Mus musculus domesticus DNA, BAC clone: B6Ng01-076K24, 5' end.DH892879|Mus musculus domesticus DNA, BAC clone: B6Ng01-076K24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,672,569 - 66,673,658)(66,791,863 - 66,792,929)
sequence
gaattcctgggctctgtctaccccggtcacaccaaccaggtggcagtatc
ttttctttagtgagcagtgaccgtgcatcagtcacttatcgatttttgta
tggacgctgtgtcacaggactccttgatttttatataagccaacaaatac
ccagagatagtcttgatgtcattgtaaagttctgagtgaaagagtcagct
acagggaagattagtgaggagggttagcctgtgggagtcaagcagtcatc
ctagagcaagccaaactagttaacaaacatccctgagaaaatgtcatctt
cctggcgttaccttttgtctgttttctgtaactctgagcaataacaaagg
gaacttgggccttttctctccagtgttcttcaagacaaacagccatccct
gtgtcctctagactagaatgtgatagatggttagcaagtgtttgttgatt
ggctaaatgaaagagtcttggccacagactttaaactgaacaccttacac
cagttccaggatagagttaaatggggtggctgaagagtgtagactgccca
gatgtggagtagatgcaagattcccaggaagagtcagtggctgtgtggtc
agaagttgcaagagaagttgaatgcggatacattgtgtcttctctgacag
gctattactagaggctcgcacaggctgtgcttgtggcccactctcttaca
ctaagtacatatgagacagagcatatgaagtcggtgatatggctccttcc
caggtgtcttggtgcctatggctccttcccaggtatcttggtgcctctgc
actcgggagccttcttgtcaggagaaaaaagccatccagggctgattgtt
ttgacaaagccacctggccagagtgactcccttatgaatggccttggcct
cctggagatagaggaggccactttagcacattcttgacagacaggaagag
gcgctctacctggaaaatgtcagctcagtgactttctttggttcctaagc
tgtacaggtccctggcaccctgcatcagtagcaaccttggtcaagatgag
agtagagcccatcaatcaagttccacagttctgg
gaattccgtatgagtatgtgatgtgtatcccacccctcacgaataaccac
aatgtaatacagtttttgcaggtcagaatatgtcatacaaatataaagac
tttttttgtttgtttgttttgctgttgtttttggagacatggtttctcta
tgcagccctggctgtcctgaaaatggctctgcagaccaggctggcatcaa
actcacagagatctacctgcctctgcctcccaagtgctggcataaaaggc
tttcaccaccactgcctggctgagaaatttttaaaaagaaaaggaagaaa
cttatgtgtgtgagacatcagaattttttactttatttactttatggaaa
ttatatctgctggaaacactgtgtgttctgctttgtttgattttcttgat
ttttttttttttaaatggcagatgtctttaaggatcaggaactgctttct
gaaatctagcatatccgcagtaagttaatgtacggtagtgttagtctgaa
aaaaatcacaatccaccatgaccctagtccacatagcaatgctttttgtg
ttgcaaagagccgtggccatcttatgtggttattaatttgcctctgtggt
aactaactgtcatgacacctgaagagcacacttttcaaggctatgaagag
tcgaaacaccagcctcagtttacctttctcgggtcccggtgtttgagagg
ggaactgtctctgaccacctcagtgtcctctggagcgccggctgttctga
tgggtgtgcgccatcctctctgaggctctactctgctaggcagcttttcc
tagtttacatggctttccaaagcacagttgtaggtttgttactgttcggg
ctgccctgctaacagctaatttgttgcatttattagaagcttgagtgtct
gtggtaacagacatccttgtttgtagtctagcttccttttattaactctg
aggctctggatagatgatagggtctggcctcagtttgtgtctatgactct
taagatgggaggtttaatttaaagtcggcgtccagagtaaatgtgcaaaa
aataggaatgccttctgtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_66672569_66673658
seq2: B6Ng01-076K24.b_42_1125

seq1  GAATTCCTGGGCTCTGTCTACCCCGGTCACACCAACCAGGTGGCAGTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGGCTCTGTCTACCCCGGTCACACCAACCAGGTGGCAGTATC  50

seq1  TTTTCTTTAGTGAGCAGTGACCGTGCATCAGTCACTTATCGATTTTTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTAGTGAGCAGTGACCGTGCATCAGTCACTTATCGATTTTTGTA  100

seq1  TGGACGCTGTGTCACAGGACTCCTTGATTTTTATATAAGCCAACAAATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACGCTGTGTCACAGGACTCCTTGATTTTTATATAAGCCAACAAATAC  150

seq1  CCAGAGATAGTCTTGATGTCATTGTAAAGTTCTGAGTGAAAGAGTCAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGATAGTCTTGATGTCATTGTAAAGTTCTGAGTGAAAGAGTCAGCT  200

seq1  ACAGGGAAGATTAGTGAGGAGGGTTAGCCTGTGGGAGTCAAGCAGTCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAAGATTAGTGAGGAGGGTTAGCCTGTGGGAGTCAAGCAGTCATC  250

seq1  CTAGAGCAAGCCAAACTAGTTAACAAACATCCCTGAGAAAATGTCATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGCAAGCCAAACTAGTTAACAAACATCCCTGAGAAAATGTCATCTT  300

seq1  CCTGGCGTTACCTTTTGTCTGTTTTCTGTAACTCTGAGCAATAACAAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCGTTACCTTTTGTCTGTTTTCTGTAACTCTGAGCAATAACAAAGG  350

seq1  GAACTTGGGCCTTTTCTCTCCAGTGTTCTTCAAGACAAACAGCCATCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGGGCCTTTTCTCTCCAGTGTTCTTCAAGACAAACAGCCATCCCT  400

seq1  GTGTCCTCTAGACTAGAATGTGATAGATGGTTAGCAAGTGTTTGTTGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTCTAGACTAGAATGTGATAGATGGTTAGCAAGTGTTTGTTGATT  450

seq1  GGCTAAATGAAAGAGTCTTGGCCACAGACTTTAAACTGAACACCTTACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAATGAAAGAGTCTTGGCCACAGACTTTAAACTGAACACCTTACAC  500

seq1  CAGTTCCAGGATAGAGTTAAATGGGGTGGCTGAAGAGTGTAGACTGCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCAGGATAGAGTTAAATGGGGTGGCTGAAGAGTGTAGACTGCCCA  550

seq1  GATGTGGAGTAGATGCAAGATTCCCAGGAAGAGTCAGTGGCTGTGTGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGAGTAGATGCAAGATTCCCAGGAAGAGTCAGTGGCTGTGTGGTC  600

seq1  AGAAGTTGCAAGAGAAGTTGAATGCGGATACATTGTGTCTTCTCTGACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTGCAAGAGAAGTTGAATGCGGATACATTGTGTCTTCTCTGACAG  650

seq1  GCTATTACTAGAGGCTCGCACAGGCTGTGCTTGTGGCCCACTCTCTTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTACTAGAGGCTCGCACAGGCTGTGCTTGTGGCCCACTCTCTTACA  700

seq1  CTAAGTACATATGAGACAGAGCATATGAAGTCGGTGATATGGCTCCTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTACATATGAGACAGAGCATATGAAGTCGGTGATATGGCTCCTTCC  750

seq1  CAGGTGTCTTGGTGCCTATGGCTCCTTCCCAGGTATCTTGGTGCCTCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTCTTGGTGCCTATGGCTCCTTCCCAGGTATCTTGGTGCCTCTGC  800

seq1  ACTCGGGAGCCTTCTTGTCAGGAGAAAAAAGCCATCCAGGGCTGATTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGGGAGCCTTCTTGTCAGGAGAAAAAAGCCATCCAGGGCTGATTGTT  850

seq1  TTGACAAAGCCACCTGGCCAGAGTGACTCCCTTATGAATGGCCTTGGCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAAGCCACCTGGCCAGAGTGACTCCCTTATGAATGGCCTTGGCCT  900

seq1  CCTGGAGATAAGAGGAGGCCACTTTAGCACATTCTTGACAGACAGGAAAG  950
      ||||||||| |||||||||||||||||||||||||||||||||||| |||
seq2  CCTGGAGAT-AGAGGAGGCCACTTTAGCACATTCTTGACAGACAGG-AAG  948

seq1  AGGCGCTCTACCTGGAAAATGTCAGCTCAGTGACTTTCTT--GGTCCTAA  998
      ||||||||||||||||||||||||||||||||||||||||  | ||||||
seq2  AGGCGCTCTACCTGGAAAATGTCAGCTCAGTGACTTTCTTTGGTTCCTAA  998

seq1  GCTGTAACAGGTCCCTTGGCACCCTGCATTCAGGTAGCAACCCTGGTCAA  1048
      ||||| ||||||||| |||||||||||| ||| ||||||||| |||||||
seq2  GCTGT-ACAGGTCCC-TGGCACCCTGCA-TCA-GTAGCAACCTTGGTCAA  1044

seq1  GATGAGAGTAGAGGCCCAATCCATTCAAG-TCCACAGTTCTGG  1090
      |||||||||||| |||||   || ||||| |||||||||||||
seq2  GATGAGAGTAGA-GCCCA--TCAATCAAGTTCCACAGTTCTGG  1084

seq1: chr17_66791863_66792929
seq2: B6Ng01-076K24.g_71_1140 (reverse)

seq1  AAACAGAAGGCA-TCCTATATTCTGCAC-TTTACTCTCGACGCTAACTCT  48
      |||||||||||| |||||| || ||||| |||||||| |||||  ||| |
seq2  AAACAGAAGGCATTCCTATTTTTTGCACATTTACTCTGGACGCCGACTTT  50

seq1  AAAATAAACCTCCCATCTT-AGAGTCATAGACACCAAACTGAGGCCAGAC  97
      ||| ||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  AAATTAAACCTCCCATCTTAAGAGTCATAGACA-CAAACTGAGGCCAGAC  99

seq1  CCTATCATCTATCCAGAGCCTCAGAGTTAAT-AAAGGAAGCTAGACTACA  146
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCTATCATCTATCCAGAGCCTCAGAGTTAATAAAAGGAAGCTAGACTACA  149

seq1  AACAAGGATGTCTGTTACCACAGACACTCAAGCTTCTAATAAATGCAACA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGATGTCTGTTACCACAGACACTCAAGCTTCTAATAAATGCAACA  199

seq1  AATTAGCTGTTAGCAGGGCAGCCCGAACAGTAACAAACCTACAACTGTGC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGCTGTTAGCAGGGCAGCCCGAACAGTAACAAACCTACAACTGTGC  249

seq1  TTTGGAAAGCCATGTAAACTAGGAAAAGCTGCCTAGCAGAGTAGAGCCTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAAGCCATGTAAACTAGGAAAAGCTGCCTAGCAGAGTAGAGCCTC  299

seq1  AGAGAGGATGGCGCACACCCATCAGAACAGCCGGCGCTCCAGAGGACACT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGATGGCGCACACCCATCAGAACAGCCGGCGCTCCAGAGGACACT  349

seq1  GAGGTGGTCAGAGACAGTTCCCCTCTCAAACACCGGGACCCGAGAAAGGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGTCAGAGACAGTTCCCCTCTCAAACACCGGGACCCGAGAAAGGT  399

seq1  AAACTGAGGCTGGTGTTTCGACTCTTCATAGCCTTGAAAAGTGTGCTCTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAGGCTGGTGTTTCGACTCTTCATAGCCTTGAAAAGTGTGCTCTT  449

seq1  CAGGTGTCATGACAGTTAGTTACCACAGAGGCAAATTAATAACCACATAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTCATGACAGTTAGTTACCACAGAGGCAAATTAATAACCACATAA  499

seq1  GATGGCCACGGCTCTTTGCAACACAAAAAGCATTGCTATGTGGACTAGGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCCACGGCTCTTTGCAACACAAAAAGCATTGCTATGTGGACTAGGG  549

seq1  TCATGGTGGATTGTGATTTTTTTCAGACTAACACTACCGTACATTAACTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTGGATTGTGATTTTTTTCAGACTAACACTACCGTACATTAACTT  599

seq1  ACTGCGGATATGCTAGATTTCAGAAAGCAGTTCCTGATCCTTAAAGACAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCGGATATGCTAGATTTCAGAAAGCAGTTCCTGATCCTTAAAGACAT  649

seq1  CTGCCATTTAAAAAAAAAAAAATCAAGAAAATCAAACAAAGCAGAACACA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATTTAAAAAAAAAAAAATCAAGAAAATCAAACAAAGCAGAACACA  699

seq1  CAGTGTTTCCAGCAGATATAATTTCCATAAAGTAAATAAAGTAAAAAATT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTTCCAGCAGATATAATTTCCATAAAGTAAATAAAGTAAAAAATT  749

seq1  CTGATGTCTCACACACATAAGTTTCTTCCTTTTCTTTTTAAAAATTTCTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTCTCACACACATAAGTTTCTTCCTTTTCTTTTTAAAAATTTCTC  799

seq1  AGCCAGGCAGTGGTGGTGAAAGCCTTTTATGCCAGCACTTGGGAGGCAGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGCAGTGGTGGTGAAAGCCTTTTATGCCAGCACTTGGGAGGCAGA  849

seq1  GGCAGGTAGATCTCTGTGAGTTTGATGCCAGCCTGGTCTGCAGAGCCATT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTAGATCTCTGTGAGTTTGATGCCAGCCTGGTCTGCAGAGCCATT  899

seq1  TTCAGGACAGCCAGGGCTGCATAGAGAAACCATGTCTCCAAAAACAACAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGACAGCCAGGGCTGCATAGAGAAACCATGTCTCCAAAAACAACAG  949

seq1  CAAAACAAACAAACAAAAAAAGTCTTTATATTTGTATGACATATTCTGAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAACAAACAAAAAAAGTCTTTATATTTGTATGACATATTCTGAC  999

seq1  CTGCAAAAACTGTATTACATTGTGGTTATTCGTGAGGGGTGGGATACACA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAAAACTGTATTACATTGTGGTTATTCGTGAGGGGTGGGATACACA  1049

seq1  TCACATACTCATACGGAATTC  1067
      |||||||||||||||||||||
seq2  TCACATACTCATACGGAATTC  1070