BAC Information

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BAC

Clone NameB6Ng01-077D05
Chromosome17 (Build37)
Map Location 36,274,709 - 36,275,965
singlet/doubletsinglet
Overlap geneLOC672718
Upstream geneBat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294
Downstream geneENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077D05.bB6Ng01-077D05.g
ACCDH893239DH893240
length1,2201,153
definitionDH893239|Mus musculus domesticus DNA, BAC clone: B6Ng01-077D05, 5' end.DH893240|Mus musculus domesticus DNA, BAC clone: B6Ng01-077D05, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctggggcacagaacaagttctgagaaatagctcccaatttgccta
gggccattgctcaagtcaagaaattgttgatcacttacgaaaagattggt
ctcctgttggagaaaatgaatttcttgttagagaggggctgtcatgtgag
gaagttattgttttgtcacagatctggaacacaagagtctcttgcctctc
tggacttggggaggagtgagaaaagtccttctcatttacctgtctccctc
tcctcttttgcgaatgctaaggatctaaaccagaagttgtgcttgctggg
gagtgctcaactgtgagctgtacttcaaatcctctctttccacccagcac
caccagctctccaaactcccagcaagcagtctaaaggaaacatggacgcg
gtttggctcccctgggcacctgaacgcagcagtctctccttccctttttt
gaggtatttctgcaccagtggctcttcaggtaggcttctatcttgtgatg
aggtatctgaggtccagtgtgggtcgctgctgtccaggaactcaggtctt
ccttccaggtcgggagatccaagccatcataggcaagctgtttgtaccag
tgaagcaggcgcccatctggtcccatattgcagccttggagcccctgagg
tatgtgagagtctagggaggacatacttggtggtcagccctgtcgcgaag
ggcaacaccactagagcacagaccaagtccaagttaatccctgcagactc
ttggtttttgaggaactggacatgtgttgggtgaaagtcatgtccaaccc
tgtagaaccttggcatgggtaggtgtcactcaccgtccacacccttgttg
taaaaacgaaccagggccatcagttcctttcagatagctgtgcttgagtc
ctgactataagaagagtctgctgttcccagtaatctgtctccttctgctc
agccagggcgccatcctcggagtctcctcattgctgccaaagcatctatg
tagacacacttctgaccggggctcccgatgccaggccaggactcagcgct
atagaaatacctcagggagtgtgaacctgggaggcagcgcgcatgaaccc
cgacccccttctcggacctcagaattgtgtgcggcatggaacaaggcgcc
aggtccgaaagctgaaaaggcagcggagatgctgactaccctggcctcag
aaccatttccctctagtctc
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ctcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactatggaaatcagtctggcggttcctca
gaaaactggatatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaggaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taagatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtgaacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagataa
aaggatggaccatgtagacactagcatatcccggggatccatcccataat
cagcttccaaatgctgacaccattgcatacactagcaagattatgctgaa
aggaccctgatatagctgtctcttgtcagagtatgcctgggcctagcaaa
catagaagtggatgctcacagtcggctatgggatggatcacatggccccc
atgaaggagctagagaagtaccaaagagctaagggatctgcaccctatag
tgacacattatgactacagtacccggagctcttgactctagctgctatgc
atcaaagatgctagtcgccttcactcgaagaaaggcccattgacagcact
ttatgcctagtacaggacgccagtctaaaggagatgggtgtggtatggga
gag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_36274709_36275965
seq2: B6Ng01-077D05.b_44_1263

seq1  GAATTCTGGGGCACAGAACAAGTTCTGAGAAATAGCTCCCAATTTGCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGGCACAGAACAAGTTCTGAGAAATAGCTCCCAATTTGCCTA  50

seq1  GGGCCATTGCTCAAGTCAAGAAATTGTTGATCACTTACGAAAAGATTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCATTGCTCAAGTCAAGAAATTGTTGATCACTTACGAAAAGATTGGT  100

seq1  CTCCTGTTGGAGAAAATGAATTTCTTGTTAGAGAGGGGCTGTCATGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTTGGAGAAAATGAATTTCTTGTTAGAGAGGGGCTGTCATGTGAG  150

seq1  GAAGTTATTGTTTTGTCACAGATCTGGAACACAAGAGTCTCTTGCCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTATTGTTTTGTCACAGATCTGGAACACAAGAGTCTCTTGCCTCTC  200

seq1  TGGACTTGGGGAGGAGTGAGAAAAGTCCTTCTCATTTACCTGTCTCCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTGGGGAGGAGTGAGAAAAGTCCTTCTCATTTACCTGTCTCCCTC  250

seq1  TCCTCTTTTGCGAATGCTAAGGATCTAAACCAGAAGTTGTGCTTGCTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTTTGCGAATGCTAAGGATCTAAACCAGAAGTTGTGCTTGCTGGG  300

seq1  GAGTGCTCAACTGTGAGCTGTACTTCAAATCCTCTCTTTCCACCCAGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTCAACTGTGAGCTGTACTTCAAATCCTCTCTTTCCACCCAGCAC  350

seq1  CACCAGCTCTCCAAACTCCCAGCAAGCAGTCTAAAGGAAACATGGACGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCTCTCCAAACTCCCAGCAAGCAGTCTAAAGGAAACATGGACGCG  400

seq1  GTTTGGCTCCCCTGGGCACCTGAACGCAGCAGTCTCTCCTTCCCTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGCTCCCCTGGGCACCTGAACGCAGCAGTCTCTCCTTCCCTTTTTT  450

seq1  GAGGTATTTCTGCACCAGTGGCTCTTCAGGTAGGCTTCTATCTTGTGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATTTCTGCACCAGTGGCTCTTCAGGTAGGCTTCTATCTTGTGATG  500

seq1  AGGTATCTGAGGTCCAGTGTGGGTCGCTGCTGTCCAGGAACTCAGGTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATCTGAGGTCCAGTGTGGGTCGCTGCTGTCCAGGAACTCAGGTCTT  550

seq1  CCTTCCAGGTCGGGAGATCCAAGCCATCATAGGCAAGCTGTTTGTACCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAGGTCGGGAGATCCAAGCCATCATAGGCAAGCTGTTTGTACCAG  600

seq1  TGAAGCAGGCGCCCATCTGGTCCCATATTGCAGCCTTGGAGCCCCTGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAGGCGCCCATCTGGTCCCATATTGCAGCCTTGGAGCCCCTGAGG  650

seq1  TATGTGAGAGTCTAGGGAGGACATACTTGGTGGTCAGCCCTGTCGCGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGAGAGTCTAGGGAGGACATACTTGGTGGTCAGCCCTGTCGCGAAG  700

seq1  GGCAACACCACTAGAGCACAGACCAAGTCCAAGTTAATCCCTGCAGACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACACCACTAGAGCACAGACCAAGTCCAAGTTAATCCCTGCAGACTC  750

seq1  TTGGTTTTTGAGGAACTGGACATGTGTTGGGTGAAAGTCATGTCCAACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTTGAGGAACTGGACATGTGTTGGGTGAAAGTCATGTCCAACCC  800

seq1  TGTAGAACCTTGGCATGGGTAGGTGTCACTCACCGTCCACACCCTTGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAACCTTGGCATGGGTAGGTGTCACTCACCGTCCACACCCTTGTTG  850

seq1  TAAAAACGAACCAGGGCCATCAGGTTCCTTTCAGATAGCTGTGCTTGAGT  900
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TAAAAACGAACCAGGGCCATCA-GTTCCTTTCAGATAGCTGTGCTTGAGT  899

seq1  CCTGACTATAAGAAGAGTCTGCTGTTCCCAGTAATCTGTCTCCTTCTGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTATAAGAAGAGTCTGCTGTTCCCAGTAATCTGTCTCCTTCTGCT  949

seq1  CCAGCCAGGGCGCCATCCTCGGAGTCTCCTCATTGCTGCCAAAGCATCTA  1000
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CAGCCAGGGCGCCATCCTCGGAGTCTCCTCATTGCTGCCAAAGCATCTA  998

seq1  TGTAGACAACAACTCTGAACCGGGGCTCCCCGATGCCAGGCCAGGACACA  1050
      ||||||| |||  |||| ||||||||| ||||||||||||||||||| ||
seq2  TGTAGAC-ACACTTCTG-ACCGGGGCT-CCCGATGCCAGGCCAGGACTCA  1045

seq1  GCGCTATAGAAATACCTCAGGGAGTGTGAACCTGGGAGGCAGCGCGCAGT  1100
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCGCTATAGAAATACCTCAGGGAGTGTGAACCTGGGAGGCAGCGCGCA-T  1094

seq1  GAGACCCCGACCCCCTCCTCGGACC-CCGAATTGGTGTGCGGGCCAGTGG  1149
      || ||||||||||||| |||||||| | ||||| ||||||||  ||   |
seq2  GA-ACCCCGACCCCCTTCTCGGACCTCAGAATT-GTGTGCGG--CA--TG  1138

seq1  GAGCAGGGCGCCAGGCTCCAGACAGCTGAAGAAGGGGGCAGGGCGGGAGG  1199
      || || ||||||||| ||| || ||||||| |    |||||    |||| 
seq2  GAACAAGGCGCCAGG-TCC-GAAAGCTGAAAA----GGCAG---CGGAG-  1178

seq1  ATTTTGCTTGGAGCTACTCCTGGCCTTCCCAGCAGACACCATTTCCCTCC  1249
          ||||  || |||| ||||||||      |||| |||||||||||| 
seq2  ---ATGCT--GA-CTAC-CCTGGCCT------CAGA-ACCATTTCCCTC-  1213

seq1  TAAGTCTC  1257
        ||||||
seq2  -TAGTCTC  1220