BAC Information

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BAC

Clone NameB6Ng01-077N22
Chromosome17 (Build37)
Map Location 20,142,935 - 20,263,192
singlet/doubletdoublet
Overlap geneEG627664, V2r7, LOC100041856, EG545190, Fpr-rs7
Upstream geneEG224552, LOC665344, LOC627466, LOC627476, EG665371, EG665376, EG627537, EG627576, EG224572, EG627618, EG627636, LOC100042273, LOC210465, LOC670534
Downstream geneFpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077N22.bB6Ng01-077N22.g
ACCDH893731DH893732
length1,0161,180
definitionDH893731|Mus musculus domesticus DNA, BAC clone: B6Ng01-077N22, 5' end.DH893732|Mus musculus domesticus DNA, BAC clone: B6Ng01-077N22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,262,173 - 20,263,192)(20,142,935 - 20,144,128)
sequence
gaattctttgtgttggaacattttacacgtgtgtgaattgttctacactc
tgctatattaacgaatgtttgcattagagatggttaatggaaacaaagtg
gtactcgttaattaaatacttttggtaattatggtgttaattatatatta
atgtctttgattttgaaattatttttagggagggctgatttccttttttt
attagatattttctttatttacatttcaaatgctatcctgaaagttccct
ataccctccccctgccctgctcccctacccacccactcccacttcttggc
cctggcattcccctgtactggggcatataaagtttgcaagaccaagggac
ctctcttcccaatgatggccgactaggacatcttctgttacatgtgcagc
tagagacatgagctctggggatactggttagttcatattgttgtgatttt
tgaaattataatacaaacatcttttaaaatttcactttcataactgcaaa
ccttctgacattacccaagtgttgtctttccatgtcatatctctatttcc
attgatatcacattcttgtgtatgtatgtgatatatatatgtatatatat
atgtgtgtatatatgtatatgtatataaatgtacatatagatacatagag
gtaacagactccatttatatattgtgacttgaatgagtattttctgagac
aatcctatttgagatgtgtgtaacaatttttctttgaaactgtaataaat
acataattaagtttacgagagctaatgacttgggacggggcacaacctga
cacatgaatttatcatataaaatatagagaactctcagtgttaatcataa
gtgtacaccactggacgtattacacggagttctaaatgtggaacttcagt
ttggtgcccttgcgcgcgagagctgaaataaatttctccgcttttgttta
tttagcatttaggagactacccttccatggaaagaataattttcacagct
ctatcttatttcttag
gaattcctagtagcaatcactgacttagacatggcaatagataccagtac
tatatttatggaaggaacacacattgctctttccagacataaggagaaat
atcacacttttatcaaggagataccttcttcaaacttctgatggattatg
cctgtcgcctaaatcactgaccttgggaaaggaattggggatagggcaac
aaatatttgttgttatttatctacattgtttaacaacttgttgatgtgca
attagtaaagacataagtagttggaaatatatcttaaattaattattgtt
aatctaataagatctttataacattatattttcaatcatattccagaaat
ccttatcacaaattgatattccagactttggcatctttttattctaaaag
gagatacaatattctacccttttttcccttttcaacatataattacccct
agtttcacaacctaatactacacagaaaacaaaggagagtgtagagagag
aaagagatccctgaatatttttttctttaagcttcagttggggagctgcc
tccaggagatccagctgtaaggcattttctcaaatagtgatcaaggggga
aaggcctcttgtgggtgggaccatcttgggcctggtaatcttggttctat
aagacagtaggctgagcaaggcaggagaggcaagtcagtaaggaacatac
ctccatggcttctgcatcagctcctactacctgacctgcttgagttccag
tctggacttccttgttgatgaacagcagtatggaagtgtaagctgaataa
gccctttcctccccaactgcttcttggtcatgatgtttgtgcaggaataa
aaaccctgactaagacagttcccataaatactaagcagcctatcaatgaa
aaaccagtttcaaagtctatatcacagagtgtttcacatctagaatatat
agtgaaatattcaagctaaatatttctgacacaaattactcacatactta
ctgtaattgaatgaaagacagtataaaaattagtaaacataaaggccaca
gatatttctttcagaatccacattattaactattcagagaaactaataaa
tacactaaaatcaatcctacagtagacatgactctctttcagaaaccggt
ggtgagaaacctgagtgcacctggtggaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_20262173_20263192
seq2: B6Ng01-077N22.b_46_1061 (reverse)

seq1  CTAAGAAAT-AGTGAGAGCTGTGAAAATTATTCTTTCCCAGGAAGGGTAG  49
      ||||||||| ||  ||||||||||||||||||||||||  ||||||||||
seq2  CTAAGAAATAAGATAGAGCTGTGAAAATTATTCTTTCCATGGAAGGGTAG  50

seq1  TCTCACTAAATGCTAAATTATCTAAAGAGCTGAGTCTTATTTCAGTTACT  99
      |||| ||||||||||||| | | |||| |  ||   ||||||||| | ||
seq2  TCTC-CTAAATGCTAAATAAACAAAAGCGGAGAAATTTATTTCAGCT-CT  98

seq1  AGAAGGAAAGGACAACAAAACTGAAGATACATATTTAGAAATACTGTGAA  149
       |   | |||| | || ||||||||| | || |||||||| | | ||| |
seq2  CGCGCGCAAGGGC-ACCAAACTGAAGTTCCACATTTAGAACT-CCGTGTA  146

seq1  ATACGTCCAATGTTGTTACACTTAAAATTAACACTTAGAGTTAAAAAATA  199
      ||||||||| || || ||||||||  ||||||||| ||||||     |||
seq2  ATACGTCCAGTGGTG-TACACTTATGATTAACACTGAGAGTT-CTCTATA  194

seq1  TTTTATATAATAAAATTCATGTGACAGGTTGTGCCCCCTTCCAAGTCGTT  249
      |||||||| || ||||||||||| ||||||||||||| | ||||||| ||
seq2  TTTTATATGAT-AAATTCATGTGTCAGGTTGTGCCCCGTCCCAAGTCATT  243

seq1  TGTACCTCCTAAAATTAATTATGTATTTATTACAATTTCAAAG-AAAATT  298
       |   ||| |||| |||||||||||||||||||| |||||||| ||||||
seq2  AG-CTCTCGTAAACTTAATTATGTATTTATTACAGTTTCAAAGAAAAATT  292

seq1  GTTACCCA-ATACCAAATAGGACTGTC-CAGAAAATACTCATTCAAGTCC  346
      ||||| || ||  ||||||||| |||| ||||||||||||||||||||| 
seq2  GTTACACACATCTCAAATAGGATTGTCTCAGAAAATACTCATTCAAGTCA  342

seq1  CAATATATAAATTGAGCAGGTTACATCTGGGAATTTATATGTACATTAAT  396
      |||||||||||| |||   ||||| |||  | || |||||||||||| ||
seq2  CAATATATAAATGGAGTCTGTTACCTCTATGTATCTATATGTACATTTAT  392

seq1  ATACATATACATATATACACACATATATATATACATATATATATCACATA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATACATATATACACACATATATATATACATATATATATCACATA  442

seq1  CATACACAAGAATGTGATATCAATGGAAATAGAGATATGACATGGAAAGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACAAGAATGTGATATCAATGGAAATAGAGATATGACATGGAAAGA  492

seq1  CAACACTTGGGTAATGTCAGAAGGTTTGCAGTTATGAAAGTGAAATTTTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTTGGGTAATGTCAGAAGGTTTGCAGTTATGAAAGTGAAATTTTA  542

seq1  AAAGATGTTTGTATTATAATTTCAAAAATCACAACAATATGAACTAACCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGTTTGTATTATAATTTCAAAAATCACAACAATATGAACTAACCA  592

seq1  GTATCCCCAGAGCTCATGTCTCTAGCTGCACATGTAACAGAAGATGTCCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCCCAGAGCTCATGTCTCTAGCTGCACATGTAACAGAAGATGTCCT  642

seq1  AGTCGGCCATCATTGGGAAGAGAGGTCCCTTGGTCTTGCAAACTTTATAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGGCCATCATTGGGAAGAGAGGTCCCTTGGTCTTGCAAACTTTATAT  692

seq1  GCCCCAGTACAGGGGAATGCCAGGGCCAAGAAGTGGGAGTGGGTGGGTAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGTACAGGGGAATGCCAGGGCCAAGAAGTGGGAGTGGGTGGGTAG  742

seq1  GGGAGCAGGGCAGGGGGAGGGTATAGGGAACTTTCAGGATAGCATTTGAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCAGGGCAGGGGGAGGGTATAGGGAACTTTCAGGATAGCATTTGAA  792

seq1  ATGTAAATAAAGAAAATATCTAATAAAAAAAGGAAATCAGCCCTCCCTAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATAAAGAAAATATCTAATAAAAAAAGGAAATCAGCCCTCCCTAA  842

seq1  AAATAATTTCAAAATCAAAGACATTAATATATAATTAACACCATAATTAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTTCAAAATCAAAGACATTAATATATAATTAACACCATAATTAC  892

seq1  CAAAAGTATTTAATTAACGAGTACCACTTTGTTTCCATTAACCATCTCTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTATTTAATTAACGAGTACCACTTTGTTTCCATTAACCATCTCTA  942

seq1  ATGCAAACATTCGTTAATATAGCAGAGTGTAGAACAATTCACACACGTGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAACATTCGTTAATATAGCAGAGTGTAGAACAATTCACACACGTGT  992

seq1  AAAATGTTCCAACACAAAGAATTC  1020
      ||||||||||||||||||||||||
seq2  AAAATGTTCCAACACAAAGAATTC  1016

seq1: chr17_20142935_20144128
seq2: B6Ng01-077N22.g_65_1244

seq1  GAATTCCTAGTAGCAATCACTGACTTAGACATGGCAATAGATACCAGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGTAGCAATCACTGACTTAGACATGGCAATAGATACCAGTAC  50

seq1  TATATTTATGGAAGGAACACACATTGCTCTTTCCAGACATAAGGAGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTATGGAAGGAACACACATTGCTCTTTCCAGACATAAGGAGAAAT  100

seq1  ATCACACTTTTATCAAGGAGATACCTTCTTCAAACTTCTGATGGATTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACTTTTATCAAGGAGATACCTTCTTCAAACTTCTGATGGATTATG  150

seq1  CCTGTCGCCTAAATCACTGACCTTGGGAAAGGAATTGGGGATAGGGCAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCGCCTAAATCACTGACCTTGGGAAAGGAATTGGGGATAGGGCAAC  200

seq1  AAATATTTGTTGTTATTTATCTACATTGTTTAACAACTTGTTGATGTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTGTTGTTATTTATCTACATTGTTTAACAACTTGTTGATGTGCA  250

seq1  ATTAGTAAAGACATAAGTAGTTGGAAATATATCTTAAATTAATTATTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTAAAGACATAAGTAGTTGGAAATATATCTTAAATTAATTATTGTT  300

seq1  AATCTAATAAGATCTTTATAACATTATATTTTCAATCATATTCCAGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAATAAGATCTTTATAACATTATATTTTCAATCATATTCCAGAAAT  350

seq1  CCTTATCACAAATTGATATTCCAGACTTTGGCATCTTTTTATTCTAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATCACAAATTGATATTCCAGACTTTGGCATCTTTTTATTCTAAAAG  400

seq1  GAGATACAATATTCTACCCTTTTTTCCCTTTTCAACATATAATTACCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATACAATATTCTACCCTTTTTTCCCTTTTCAACATATAATTACCCCT  450

seq1  AGTTTCACAACCTAATACTACACAGAAAACAAAGGAGAGTGTAGAGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCACAACCTAATACTACACAGAAAACAAAGGAGAGTGTAGAGAGAG  500

seq1  AAAGAGATCCCTGAATATTTTTTTCTTTAAGCTTCAGTTGGGGAGCTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGATCCCTGAATATTTTTTTCTTTAAGCTTCAGTTGGGGAGCTGCC  550

seq1  TCCAGGAGATCCAGCTGTAAGGCATTTTCTCAAATAGTGATCAAGGGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGAGATCCAGCTGTAAGGCATTTTCTCAAATAGTGATCAAGGGGGA  600

seq1  AAGGCCTCTTGTGGGTGGGACCATCTTGGGCCTGGTAATCTTGGTTCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTCTTGTGGGTGGGACCATCTTGGGCCTGGTAATCTTGGTTCTAT  650

seq1  AAGACAGTAGGCTGAGCAAGGCAGGAGAGGCAAGTCAGTAAGGAACATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGTAGGCTGAGCAAGGCAGGAGAGGCAAGTCAGTAAGGAACATAC  700

seq1  CTCCATGGCTTCTGCATCAGCTCCTACTACCTGACCTGCTTGAGTTCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGGCTTCTGCATCAGCTCCTACTACCTGACCTGCTTGAGTTCCAG  750

seq1  TCTGGACTTCCTTGTTGATGAACAGCAGTATGGAAGTGTAAGCTGAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGACTTCCTTGTTGATGAACAGCAGTATGGAAGTGTAAGCTGAATAA  800

seq1  GCCCTTTCCTCCCCAACTGCTTCTTGGTCATGATGTTTGTGCAGGAATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTCCTCCCCAACTGCTTCTTGGTCATGATGTTTGTGCAGGAATAA  850

seq1  AAACCCTGACTAAGACAGTTCCCATAAATACTAAGCAGCCTATCAAATGA  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAACCCTGACTAAGACAGTTCCCATAAATACTAAGCAGCCTATC-AATGA  899

seq1  AAAACCAGTTTCAAAGTCTATATCACAGAGTGTTTCACATCTAGAATATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAGTTTCAAAGTCTATATCACAGAGTGTTTCACATCTAGAATATA  949

seq1  TAGTGAAATATTCAAGCTAAATATTTCTGACACAAATTACTCACAATACT  1000
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAGTGAAATATTCAAGCTAAATATTTCTGACACAAATTACTCAC-ATACT  998

seq1  TACTGTAATTGAATGGAAAGACAGTTATAAAAATTAGTAAACATAAAAGC  1050
      |||||||||||||| ||||||||| |||||||||||||||||||||| ||
seq2  TACTGTAATTGAAT-GAAAGACAG-TATAAAAATTAGTAAACATAAAGGC  1046

seq1  CAACAGATATTTCTTTGCAGTATTCAACATTATTAACTA-TCAGAGAAAA  1099
      | |||||||||||||| ||| | || ||||||||||||| |||||| |||
seq2  C-ACAGATATTTCTTT-CAG-AATCCACATTATTAACTATTCAGAG-AAA  1092

seq1  CTAAATAAATACAACTTAATATTCCATTTCCTTACAGTAGACATGACT-T  1148
      || ||||||||||   ||| ||  || |  | |||||||||||||||| |
seq2  CT-AATAAATACA--CTAAAAT--CAAT--CCTACAGTAGACATGACTCT  1135

seq1  C-TTCAGAAA-CAGTGATGAGAAAACATTGAGTGCAGCCTGTTGGAAT  1194
      | |||||||| | ||| ||||||| |  |||||||| |||| ||||||
seq2  CTTTCAGAAACCGGTGGTGAGAAACC--TGAGTGCA-CCTGGTGGAAT  1180