BAC Information

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BAC

Clone NameB6Ng01-078F03
Chromosome17 (Build37)
Map Location 76,644,388 - 76,806,314
singlet/doubletdoublet
Overlap geneLOC100043886
Upstream geneLtbp1, Rasgrp3, 2810405J04Rik, LOC668787, LOC100043885
Downstream geneEG624348, LOC545234
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078F03.bB6Ng01-078F03.g
ACCDH894049DH894050
length9031,125
definitionDH894049|Mus musculus domesticus DNA, BAC clone: B6Ng01-078F03, 5' end.DH894050|Mus musculus domesticus DNA, BAC clone: B6Ng01-078F03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,644,388 - 76,645,408)(76,805,154 - 76,806,314)
sequence
gaattcctcctcctctgaactcccataaatgtttagtgagtcatgcagct
tgtcacaggtggaaagagcatgatccttgagctgtagattcctagttttg
aatactgtttctgacagttattagatgtgggcagattattctatacttca
aatccctcatgtgtagaaaaaaatatgtaactaaaactcttggttctaca
ataaaattttactttaaaaaaaacttgcccgtctttcttatgaaattttt
aagtgtagacaacatgtcttacattctgactccattgtcagattcagtgc
cttctcagcagttggcttactgattggcattcattttcagacacagaaaa
tctacagattttaagctccctttccaacttcttcaataggagtaatatgt
atagattaattcaatttctttaatatactctggtctcttagaattatgct
cattgattatgccgaccttgtttcctagactgccctttcttctattccta
tatacctgttaacatttataactttcataattacttcttatcctcatttt
ctcagcagtaccatactatgaacaagatctgctttgacatttgaatccct
tatatcaagtagaaatcagggacttagttggccactatccaattatagtg
ggttttcctaaatcaattcacatttcacattttttttaaactcaagcttt
tgtttgagtaattggtataaagcaaagatagcattaatagatagtggttt
gaaagtatttcttcggacaactagtagaaatttaagtactatgaagatgc
atcatctatcactatggaaacctatataaaatagaatacaccagattaat
gtttattgttaagtagatagactcctctcttctcctctcctctcctctcc
act
gaattctagacagtttgaagatgcactgaagaatcctgggagtccattta
aggtcagatcagttggcagcatggtgttgcatcctttatcaacaagctgt
tagggggctaagtaaaggctgccctgggaacttgacttagctgcaatcaa
tacttgccaagcatgtgtgatggagagagaaggcaaccgagtcctgcaag
gacacagagggctgattgcagtgacagaagtggctcttaatcttgaaaaa
gaactatgccatcacttctgctactgaaggagtcatgggtgatgggtgca
gaaaacattgtttagcagttaaatgtaggagtaacacttgtcttgaactg
atgaaagtttgacttttaattaaaatattttgcatcttctatgattgttt
tgtcagtgatatgtgtgcattttatttccataataaggaaatggtgatct
aagtatttcatttttatatattcactatatctgcatacccttagactaga
caatataagtgtaggcttaatcgcatcacagtttgggatgatatcaacta
tgacatttggaacaatgtaaagattaagtctgatgactttttggggatct
tgctgtaaatattcttttgtccctatatgtgaataccgaagagttttggt
cactttgatgttaatttgcgtaagatttaaggacatgactagagatacgt
attctttactcaaagaaacaatggtggatataataatttgacttacgtgt
tttctctgagatcactcatatcgcctttatttgtcacctaatctggacct
ttagaatgattacttaagtaggacaggaaaccagtgtagacatacaaaaa
aaataaataaataaataaaaggaaataacaattaaatcagtgtgatagag
aagaactgtttaggaagtctcaaagcatgttgccactggctctttgatac
caggaaagacgagcagtagatgaaatgactacacagtctgagatattttc
tgcatgtccacagatttctgtgctactaataaatgagtctaaggtacaga
ccagtaagtacttgcatctttacataattttgattgattatacattgtca
catgatgaatttgattgagaaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_76644388_76645408
seq2: B6Ng01-078F03.b_46_948

seq1  GAATTCCTCCTCCTCTGAACTCCCATAAATGTTTAGTGAGTCATGCAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCTCCTCTGAACTCCCATAAATGTTTAGTGAGTCATGCAGCT  50

seq1  TGTCACAGGTGGAAAGAGCATGATCCTTGAGCTGTAGATTCCTAGTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACAGGTGGAAAGAGCATGATCCTTGAGCTGTAGATTCCTAGTTTTG  100

seq1  AATACTGTTTCTGACAGTTATTAGATGTGGGCAGATTATTCTATACTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGTTTCTGACAGTTATTAGATGTGGGCAGATTATTCTATACTTCA  150

seq1  AATCCCTCATGTGTAGAAAAAAATATGTAACTAAAACTCTTGGTTCTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCTCATGTGTAGAAAAAAATATGTAACTAAAACTCTTGGTTCTACA  200

seq1  ATAAAATTTTACTTTAAAAAAAACTTGCCCGTCTTTCTTATGAAATTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTTTACTTTAAAAAAAACTTGCCCGTCTTTCTTATGAAATTTTT  250

seq1  AAGTGTAGACAACATGTCTTACATTCTGACTCCATTGTCAGATTCAGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTAGACAACATGTCTTACATTCTGACTCCATTGTCAGATTCAGTGC  300

seq1  CTTCTCAGCAGTTGGCTTACTGATTGGCATTCATTTTCAGACACAGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAGCAGTTGGCTTACTGATTGGCATTCATTTTCAGACACAGAAAA  350

seq1  TCTACAGATTTTAAGCTCCCTTTCCAACTTCTTCAATAGGAGTAATATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGATTTTAAGCTCCCTTTCCAACTTCTTCAATAGGAGTAATATGT  400

seq1  ATAGATTAATTCAATTTCTTTAATATACTCTGGTCTCTTAGAATTATGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTAATTCAATTTCTTTAATATACTCTGGTCTCTTAGAATTATGCT  450

seq1  CATTGATTATGCCGACCTTGTTTCCTAGACTGCCCTTTCTTCTATTCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATTATGCCGACCTTGTTTCCTAGACTGCCCTTTCTTCTATTCCTA  500

seq1  TATACCTGTTAACATTTATAACTTTCATAATTACTTCTTATCCTCATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCTGTTAACATTTATAACTTTCATAATTACTTCTTATCCTCATTTT  550

seq1  CTCAGCAGTACCATACTATGAACAAGATCTGCTTTGACATTTGAATCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAGTACCATACTATGAACAAGATCTGCTTTGACATTTGAATCCCT  600

seq1  TATATCAAGTAGAAATCAGGGACTTAGTTGGCCACTATCCAATTATAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCAAGTAGAAATCAGGGACTTAGTTGGCCACTATCCAATTATAGTG  650

seq1  GGTTTTCCTAAATCAATTCACATTTCACATTTTTTTTAAACTCAAGCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCCTAAATCAATTCACATTTCACATTTTTTTTAAACTCAAGCTTT  700

seq1  TGTTTGAGTAATTGGTATAAAGCAAAGATAGCATTAATAGATAGTGGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGAGTAATTGGTATAAAGCAAAGATAGCATTAATAGATAGTGGTTT  750

seq1  GAAAGTATTTCTTCGGACAACTAGTAGAAATTTAAGTACTATGAAGATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTATTTCTTCGGACAACTAGTAGAAATTTAAGTACTATGAAGATGC  800

seq1  ATCATCTATCACTATGGAAACCTATATAAAATAGAATACACCAGATTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTATCACTATGGAAACCTATATAAAATAGAATACACCAGATTAAT  850

seq1  GTTTATTGTTAAGTAGATAGACTCCTCTCCTCTCCTCTCCTCTCCTCTCC  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTTTATTGTTAAGTAGATAGACTCCTCTCTTCTCCTCTCCTCTCCTCTCC  900

seq1  TCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCCTCTCC  950
       ||                                               
seq2  ACT-----------------------------------------------  903

seq1  TCCCCTCCCCTCCCCTCCCCTCCCCTCCTCTCCTCTCCTCTCCTCTCTTC  1000
                                                        
seq2  --------------------------------------------------  903

seq1  TCCTCTCCTCTCCTCTCCTCT  1021
                           
seq2  ---------------------  903

seq1: chr17_76805154_76806314
seq2: B6Ng01-078F03.g_69_1193 (reverse)

seq1  TATTTTCTCCAAATCAAAATTTCATCAATGTGTGACCAAATTGTATAACT  50
      |||||||||  |||||||  |||||||   ||||||   | |||||||  
seq2  TATTTTCTC--AATCAAA--TTCATCA---TGTGAC---AATGTATAA--  38

seq1  CCAATACAAAATTAATGTAAAAGATGCAAAGTTACTTTACTGGTCTGTAC  100
       |||| ||||||| |||| ||||||||||   ||| ||||||||||||||
seq2  TCAAT-CAAAATT-ATGT-AAAGATGCAA--GTAC-TTACTGGTCTGTAC  82

seq1  CCTTTTAGACCTCAATTTAATTAGGTAGCACCAGAAATCTGTGGACATGC  150
      |   ||||| ||||  || |||| |||||| |||||||||||||||||||
seq2  C---TTAGA-CTCA--TTTATTA-GTAGCA-CAGAAATCTGTGGACATGC  124

seq1  AGAAAATTATTCCTCAGAACTTGTGTAGTCATTTCATCTACTGCTCGTCC  200
      |||||| |||  ||||||   ||||||||||||||||||||||||||| |
seq2  AGAAAA-TAT--CTCAGA--CTGTGTAGTCATTTCATCTACTGCTCGT-C  168

seq1  TTTCCTGGTATTCAAAGAGCCCAGTGGCAACATGCTTTTGGAGACTTCCT  250
      |||||||||| |||||||| ||||||||||||||||||  ||||||||||
seq2  TTTCCTGGTA-TCAAAGAG-CCAGTGGCAACATGCTTT--GAGACTTCCT  214

seq1  AAACAGTTCTTCTCTATCACACTGATTTAATTGTTATTTCCTTTTATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTTCTTCTCTATCACACTGATTTAATTGTTATTTCCTTTTATTTA  264

seq1  TTTATTTATTTTTTTTGTATGTCTACACTGGTTTCCTGTCCTACTTAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTTTTTTGTATGTCTACACTGGTTTCCTGTCCTACTTAAGT  314

seq1  AATCATTCTAAAGGTCCAGATTAGGTGACAAATAAAGGCGATATGAGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTCTAAAGGTCCAGATTAGGTGACAAATAAAGGCGATATGAGTGA  364

seq1  TCTCAGAGAAAACACGTAAGTCAAATTATTATATCCACCATTGTTTCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAGAAAACACGTAAGTCAAATTATTATATCCACCATTGTTTCTTT  414

seq1  GAGTAAAGAATACGTATCTCTAGTCATGTCCTTAAATCTTACGCAAATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAAGAATACGTATCTCTAGTCATGTCCTTAAATCTTACGCAAATTA  464

seq1  ACATCAAAGTGACCAAAACTCTTCGGTATTCACATATAGGGACAAAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAAAGTGACCAAAACTCTTCGGTATTCACATATAGGGACAAAAGAA  514

seq1  TATTTACAGCAAGATCCCCAAAAAGTCATCAGACTTAATCTTTACATTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACAGCAAGATCCCCAAAAAGTCATCAGACTTAATCTTTACATTGT  564

seq1  TCCAAATGTCATAGTTGATATCATCCCAAACTGTGATGCGATTAAGCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATGTCATAGTTGATATCATCCCAAACTGTGATGCGATTAAGCCTA  614

seq1  CACTTATATTGTCTAGTCTAAGGGTATGCAGATATAGTGAATATATAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATATTGTCTAGTCTAAGGGTATGCAGATATAGTGAATATATAAAA  664

seq1  ATGAAATACTTAGATCACCATTTCCTTATTATGGAAATAAAATGCACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATACTTAGATCACCATTTCCTTATTATGGAAATAAAATGCACACA  714

seq1  TATCACTGACAAAACAATCATAGAAGATGCAAAATATTTTAATTAAAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTGACAAAACAATCATAGAAGATGCAAAATATTTTAATTAAAAGT  764

seq1  CAAACTTTCATCAGTTCAAGACAAGTGTTACTCCTACATTTAACTGCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTTCATCAGTTCAAGACAAGTGTTACTCCTACATTTAACTGCTAA  814

seq1  ACAATGTTTTCTGCACCCATCACCCATGACTCCTTCAGTAGCAGAAGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTTTTCTGCACCCATCACCCATGACTCCTTCAGTAGCAGAAGTGA  864

seq1  TGGCATAGTTCTTTTTCAAGATTAAGAGCCACTTCTGTCACTGCAATCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATAGTTCTTTTTCAAGATTAAGAGCCACTTCTGTCACTGCAATCAG  914

seq1  CCCTCTGTGTCCTTGCAGGACTCGGTTGCCTTCTCTCTCCATCACACATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGTGTCCTTGCAGGACTCGGTTGCCTTCTCTCTCCATCACACATG  964

seq1  CTTGGCAAGTATTGATTGCAGCTAAGTCAAGTTCCCAGGGCAGCCTTTAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCAAGTATTGATTGCAGCTAAGTCAAGTTCCCAGGGCAGCCTTTAC  1014

seq1  TTAGCCCCCTAACAGCTTGTTGATAAAGGATGCAACACCATGCTGCCAAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCCCCTAACAGCTTGTTGATAAAGGATGCAACACCATGCTGCCAAC  1064

seq1  TGATCTGACCTTAAATGGACTCCCAGGATTCTTCAGTGCATCTTCAAACT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTGACCTTAAATGGACTCCCAGGATTCTTCAGTGCATCTTCAAACT  1114

seq1  GTCTAGAATTC  1161
      |||||||||||
seq2  GTCTAGAATTC  1125