BAC Information

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BAC

Clone NameB6Ng01-078J22
Chromosome17 (Build37)
Map Location 87,369,390 - 87,503,950
singlet/doubletdoublet
Overlap geneRhoq, Pigf, Cript, EG433144
Upstream geneSrbd1, LOC545228, Prkce, Epas1, 1700090G07Rik, Atp6v1e2
Downstream geneSocs5, Mcfd2, Ttc7, 1700011E24Rik, Calm2, LOC100043727, Tacstd1, Msh2, Kcnk12, LOC626888, LOC668863, EG626920, Msh6, Fbxo11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078J22.bB6Ng01-078J22.g
ACCDH894267DH894268
length1,1501,053
definitionDH894267|Mus musculus domesticus DNA, BAC clone: B6Ng01-078J22, 5' end.DH894268|Mus musculus domesticus DNA, BAC clone: B6Ng01-078J22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,502,780 - 87,503,950)(87,369,390 - 87,370,445)
sequence
gaattccatgatgttgtactccacgcatgacagcatttgcttcatgtgta
ctccttactcggcagtgccaagcacacgtggtcaatttagaagtaccctt
tgtttcacatggcaagcctcaaacccgaagaactgtgggtgcattgccag
gacaggccctgcaggaggtctcagtggccacttcactttgtgtttccaag
cccttgggtattgcaccccaacagggaacaagctgttgccagttccatca
tagtctttgtaattaaatccaagtctggcagagggcagtgcataattatg
aagtattattatggtttttatcattattaggcacccagctgcccagccca
ggaaaccacagtagtaaaacactgagaaccgagctcctctcccagctggc
atgaataaataccaggtgtattggcacagagctttgcagctccacactca
acgagatgagaccttctgtcccctcctcttggggagatccaattttgaat
gaatggagaaaggaaatacaaacacagacctttgccatcacccctgaatc
aaattcatttttctacatctcccgagaacagtttcttctcatctgcatat
ttattgcataaatcttttccaactttatccttgacctgtacacttcctga
acattattctccaaatctcctgagagcgtgtgggatttgtgagggcttgc
gaggggtacaaaagaagggatgcccagaaagcacagccgtgtgtgcagtg
agctcctcctcctcctcctccatgtgtgcagtgagctcctcccccatgtg
tgcagtgagctcctcccccatgtgtgctgtgagctcctcctcccccatgt
gtgcagcgagcaactcctcctccttgtgtgctgtgagctcctcccccatg
tgtgcagcgagcttctccccatttgtgcagtgagcttctcttctcctcat
gtgtgcagtgagctcttccccatgtatgcagcaagctctccccatgtgtg
cagtgagctctctctctcaatgtgtacagtgagctcctcccccattggtg
cagtgagctcctcccatgtgtgcttagctctcccagtgtgtgcagtgagc
tctccccattgtacagtgagctctcccatatgtgctgtgagctcttcctc

gaattctttctcattggctctccactcgctcagctaaaggctctccggtg
gctaagagcaccaggtacagctccttccctggtgtttcagctgtcatccg
tcagaggatagtgacgcaggcatgtggatggcgcatccaactaccaatct
tgtctctgacttggctcactaggcttaaccgttaccacgctccggccttt
gcatcctcaaggtcccctggtcacgaggtagtttggatgatgggttttgg
cttctgctgctgaacagcacaccttgtctgtatttccctgtggctacgat
cagtccactggccagctcttcccacagcctctttccttccctatgtgatg
ggagacagtgtctaccttgcaggttggctgcacgggttgggaattacgta
gagttggttacctcactctagggagtgccatacctgctgggttctggtga
tgtggtctggtgcctgctctgtgacccagccttctgtgggggagaggaag
gtgatgagaccctgggaagtgcattgcacagctgggaggatgaaggagag
gagagcagctgcagggtccccgagggtgagggctgctgctttggctgata
cagagaaaggcaggaggcagaagagcagtgccggccaccctggccatctt
gctggctgtggccatctccctgcctgtggccatctcgctggccatctccc
tgcctgtggccacctccctggctgtggccatctccctggccacctccctg
gctgtggccatctcgctggctgtggccatctccctggttgtggccatctc
gctggctgtggccatctccctggctgtggccatctccctggctgtggcca
tctccctggctgtggccatctcgctggctgtggccatctcgttggctgtg
gccatctccctggctgtggccatctccctgcctgtggcatctcactggct
gtggcatctcctggctgtggagtcctggctctgctgcttcccaccgaaag
ctcccctcttccaaccgaggttccacattcacaggaagggttaatgaact
gta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_87502780_87503950
seq2: B6Ng01-078J22.b_45_1194 (reverse)

seq1  GAGGAGGAGCTCACAGCACATATAGGGGAGGAGCTCACTGTACACATGGG  50
      ||||| |||||||||||||||||  |||| |||||||||||||| |||||
seq2  GAGGAAGAGCTCACAGCACATAT--GGGA-GAGCTCACTGTACA-ATGGG  46

seq1  GGAGGAGCTCACTGCACACATGGGGGAGGAGCTCACTGCACACATGGGGG  100
      |   ||||||||||||||||  |||   ||||| |  ||||||||  |||
seq2  G--AGAGCTCACTGCACACACTGGG--AGAGCTAA--GCACACAT--GGG  88

seq1  AGGAGCTCACTGCACACATGGGGGAGGAGCTCACTGTACACATGGAGGAG  150
      |||||||||||||||  |||||||||||||||||||||||||| ||    
seq2  AGGAGCTCACTGCACCAATGGGGGAGGAGCTCACTGTACACATTGA----  134

seq1  GAGGAGGAGCTCACTGCACACATGGGGGAGGAGCTTGCTGCATACATGGG  200
      |||   |||||||||||||||||||||   ||||||||||||||||| ||
seq2  GAGAGAGAGCTCACTGCACACATGGGG--AGAGCTTGCTGCATACAT-GG  181

seq1  GGAGGAGCTCACTGCACACATGGAGGAGGAGGAGAAGCTCACTGCACAAA  250
      ||| ||||||||||||||||| ||||| || |||||||||||||||||||
seq2  GGAAGAGCTCACTGCACACAT-GAGGA-GAAGAGAAGCTCACTGCACAAA  229

seq1  TGGGGGAGGAGCTCGCTGCACACATGGGGGAGGAGCTCACAGCACACAAG  300
      | |||||| |||||||||||||||||||||||||||||||||||||||||
seq2  T-GGGGAGAAGCTCGCTGCACACATGGGGGAGGAGCTCACAGCACACAAG  278

seq1  GAGGAGGAGTTGCTCGCTGCACACATGGGGGAGGAGGAGCTCACAGCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGAGTTGCTCGCTGCACACATGGGGGAGGAGGAGCTCACAGCACA  328

seq1  CATGGGGGAGGAGCTCACTGCACACATGGGGGAGGAGCTCACTGCACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGGGAGGAGCTCACTGCACACATGGGGGAGGAGCTCACTGCACACA  378

seq1  TGGAGGAGGAGGAGGAGGAGCTCACTGCACACACGGCTGTGCTTTCTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAGGAGGAGGAGGAGCTCACTGCACACACGGCTGTGCTTTCTGGG  428

seq1  CATCCCTTC-TTTGTACCCCTCGCAAGCCCTCACAAATCCCACACGCTCT  499
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTTCTTTTGTACCCCTCGCAAGCCCTCACAAATCCCACACGCTCT  478

seq1  CAGGAGATTTGGAGAATAATGTTCAGGAAGTGTACAGGTCAAGGATAAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGATTTGGAGAATAATGTTCAGGAAGTGTACAGGTCAAGGATAAAG  528

seq1  TTGGAAAAGATTTATGCAATAAATATGCAGATGAGAAGAAACTGTTCTCG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAAGATTTATGCAATAAATATGCAGATGAGAAGAAACTGTTCTCG  578

seq1  GGAGATGTAGAAAAATGAATTTGATTCAGGGGTGATGGCAAAGGTCTGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGTAGAAAAATGAATTTGATTCAGGGGTGATGGCAAAGGTCTGTG  628

seq1  TTTGTATTTCCTTTCTCCATTCATTCAAAATTGGATCTCCCCAAGAGGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATTTCCTTTCTCCATTCATTCAAAATTGGATCTCCCCAAGAGGAG  678

seq1  GGGACAGAAGGTCTCATCTCGTTGAGTGTGGAGCTGCAAAGCTCTGTGCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGAAGGTCTCATCTCGTTGAGTGTGGAGCTGCAAAGCTCTGTGCC  728

seq1  AATACACCTGGTATTTATTCATGCCAGCTGGGAGAGGAGCTCGGTTCTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACACCTGGTATTTATTCATGCCAGCTGGGAGAGGAGCTCGGTTCTCA  778

seq1  GTGTTTTACTACTGTGGTTTCCTGGGCTGGGCAGCTGGGTGCCTAATAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTACTACTGTGGTTTCCTGGGCTGGGCAGCTGGGTGCCTAATAAT  828

seq1  GATAAAAACCATAATAATACTTCATAATTATGCACTGCCCTCTGCCAGAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAACCATAATAATACTTCATAATTATGCACTGCCCTCTGCCAGAC  878

seq1  TTGGATTTAATTACAAAGACTATGATGGAACTGGCAACAGCTTGTTCCCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATTTAATTACAAAGACTATGATGGAACTGGCAACAGCTTGTTCCCT  928

seq1  GTTGGGGTGCAATACCCAAGGGCTTGGAAACACAAAGTGAAGTGGCCACT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGGTGCAATACCCAAGGGCTTGGAAACACAAAGTGAAGTGGCCACT  978

seq1  GAGACCTCCTGCAGGGCCTGTCCTGGCAATGCACCCACAGTTCTTCGGGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTCCTGCAGGGCCTGTCCTGGCAATGCACCCACAGTTCTTCGGGT  1028

seq1  TTGAGGCTTGCCATGTGAAACAAAGGGTACTTCTAAATTGACCACGTGTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCTTGCCATGTGAAACAAAGGGTACTTCTAAATTGACCACGTGTG  1078

seq1  CTTGGCACTGCCGAGTAAGGAGTACACATGAAGCAAATGCTGTCATGCGT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCACTGCCGAGTAAGGAGTACACATGAAGCAAATGCTGTCATGCGT  1128

seq1  GGAGTACAACATCATGGAATTC  1171
      ||||||||||||||||||||||
seq2  GGAGTACAACATCATGGAATTC  1150

seq1: chr17_87369390_87370445
seq2: B6Ng01-078J22.g_68_1120

seq1  GAATTCTTTCTCATTGGCTCTCCACTCGCTCAGCTAAAGGCTCTCCGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTCATTGGCTCTCCACTCGCTCAGCTAAAGGCTCTCCGGTG  50

seq1  GCTAAGAGCACCAGGTACAGCTCCTTCCCTGGTGTTTCAGCTGTCATCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGAGCACCAGGTACAGCTCCTTCCCTGGTGTTTCAGCTGTCATCCG  100

seq1  TCAGAGGATAGTGACGCAGGCATGTGGATGGCGCATCCAACTACCAATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGATAGTGACGCAGGCATGTGGATGGCGCATCCAACTACCAATCT  150

seq1  TGTCTCTGACTTGGCTCACTAGGCTTAACCGTTACCACGCTCCGGCCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTGACTTGGCTCACTAGGCTTAACCGTTACCACGCTCCGGCCTTT  200

seq1  GCATCCTCAAGGTCCCCTGGTCACGAGGTAGTTTGGATGATGGGTTTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTCAAGGTCCCCTGGTCACGAGGTAGTTTGGATGATGGGTTTTGG  250

seq1  CTTCTGCTGCTGAACAGCACACCTTGTCTGTATTTCCCTGTGGCTACGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCTGCTGAACAGCACACCTTGTCTGTATTTCCCTGTGGCTACGAT  300

seq1  CAGTCCACTGGCCAGCTCTTCCCACAGCCTCTTTCCTTCCCTATGTGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCACTGGCCAGCTCTTCCCACAGCCTCTTTCCTTCCCTATGTGATG  350

seq1  GGAGACAGTGTCTACCTTGCAGGTTGGCTGCACGGGTTGGGAATTACGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACAGTGTCTACCTTGCAGGTTGGCTGCACGGGTTGGGAATTACGTA  400

seq1  GAGTTGGTTACCTCACTCTAGGGAGTGCCATACCTGCTGGGTTCTGGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGGTTACCTCACTCTAGGGAGTGCCATACCTGCTGGGTTCTGGTGA  450

seq1  TGTGGTCTGGTGCCTGCTCTGTGACCCAGCCTTCTGTGGGGGAGAGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCTGGTGCCTGCTCTGTGACCCAGCCTTCTGTGGGGGAGAGGAAG  500

seq1  GTGATGAGACCCTGGGAAGTGCATTGCACAGCTGGGAGGATGAAGGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAGACCCTGGGAAGTGCATTGCACAGCTGGGAGGATGAAGGAGAG  550

seq1  GAGAGCAGCTGCAGGGTCCCCGAGGGTGAGGGCTGCTGCTTTGGCTGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAGCTGCAGGGTCCCCGAGGGTGAGGGCTGCTGCTTTGGCTGATA  600

seq1  CAGAGAAAGGCAGGAGGCAGAAGAGCAGTGCCGGCCACCCTGGCCATCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAAGGCAGGAGGCAGAAGAGCAGTGCCGGCCACCCTGGCCATCTT  650

seq1  GCTGGCTGTGGCCATCTCCCTGCCTGTGGCCATCTCGCTGGCCATCTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTGTGGCCATCTCCCTGCCTGTGGCCATCTCGCTGGCCATCTCCC  700

seq1  TGCCTGTGGCCACCTCCCTGGCTGTGGCCATCTCCCTGGCCACCTCCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTGGCCACCTCCCTGGCTGTGGCCATCTCCCTGGCCACCTCCCTG  750

seq1  GCTGTGGCCATCTCGCTGGCTGTGGCCATCTCCCTGGTTGTGGCCATCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGCCATCTCGCTGGCTGTGGCCATCTCCCTGGTTGTGGCCATCTC  800

seq1  GCTGGCTGTGGCCATCTCCCTGGCTGTGGCCATCTCCCTGGCTGTGGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTGTGGCCATCTCCCTGGCTGTGGCCATCTCCCTGGCTGTGGCCA  850

seq1  TCTCCCTGGCTGTGGCCATCTCGCTGGCTGTGGCCATCTCGTTGGCTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTGGCTGTGGCCATCTCGCTGGCTGTGGCCATCTCGTTGGCTGTG  900

seq1  GCCATCTCCCTGGCTGTGGCCATCTCCCTGGCTGTGGCCATCTCACTGGC  950
      |||||||||||||||||||||||||||||| |||||| ||||||||||||
seq2  GCCATCTCCCTGGCTGTGGCCATCTCCCTGCCTGTGG-CATCTCACTGGC  949

seq1  TGTGGCCATCTCCCTGGCTGTGGAGTCCTGGCTCTGCTGCTTCCCGCCAG  1000
      ||||| ||||| ||||||||||||||||||||||||||||||||| || |
seq2  TGTGG-CATCT-CCTGGCTGTGGAGTCCTGGCTCTGCTGCTTCCCACC-G  996

seq1  AAAGCTCCCCTCTCCCAAACTGATG-TCCACATCCACATGATAGGGTT-A  1048
      ||||||||||||| || ||| || | ||||||| |||| || |||||| |
seq2  AAAGCTCCCCTCTTCC-AACCGAGGTTCCACATTCACAGGA-AGGGTTAA  1044

seq1  TG-ACTGTA  1056
      || ||||||
seq2  TGAACTGTA  1053