BAC Information

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BAC

Clone NameB6Ng01-078L24
Chromosome17 (Build37)
Map Location 90,146,575 - 90,147,716
singlet/doubletsinglet
Overlap genenone
Upstream geneLhcgr, LOC668867, Fshr, LOC100043904
Downstream geneLOC100043906, Nrxn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-078L24.bB6Ng01-078L24.g
ACCDH894362DH894363
length1,130851
definitionDH894362|Mus musculus domesticus DNA, BAC clone: B6Ng01-078L24, 5' end.DH894363|Mus musculus domesticus DNA, BAC clone: B6Ng01-078L24, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaaatctcaaagaattaaatgagaaattctatccattttcaaag
tttttttgattttgaattccaaagactggcagaaaaaaaaaaccttcttc
tctttccctacatcattttattctcctgtgacccataagtcctacctata
cctcccacctagtaattggatcccagccttctttactgacaaatcaagaa
ccaattagggaactagaccttagtatcaatccctccccttacatgtggca
attaatttgtttcatacacattctatgcacaaacatctttcagcaaagta
aaaacatcagattgtatgtgatctctattacacatcagaatactttacag
aaaataaatgatgcatatgaacacacacacacacacacacacacacacac
acacacacacacacacagactttcttaccttccaattggcatgaaaggag
ttaacaaactgatacgatagtgtgggaccaaggagccatacacagaatgg
tcgttaagaagctaggcagttgcaagcacaacaaaaacaatatcatggga
aagttccaaaccacttccctaattcacttatttttttggaaaatgtaaaa
gtaaaccttcccacttctgtattttttagtaagagtggcatgcaggtaag
atgggtgccgctgataaaatgaagtctacatggagactggctgagagctg
agtgaccacaacttagcctttgagaacacttgttttagttttcttctttg
ctgctgcaataaaatagtgaccataagtatcttagaggaggaaggacttt
atctggaaatattatggtccatcattgagggaaatcaaaggcaggaaatt
aagacagtaggagcatgaatgcaaaaaccaaagcaatgaccatgggaaac
agtgtttaaagccttgcttctcctgattgcacaactgctattcttattct
tgcttcccatctgctcagaatgtgcacttaccttggcctggattccacat
catcgacatgaagaaaattctccaaaggagtgatcacagcccgttctgat
gtgagtatctcactggaatcctgtcttcccaaggcactaaatcagtatag
tctcttatccactcttctgcacatgtgctc

gaattccatgaactgaactgcactgaactgaatggaactgaatggaatta
catgaaaagaactgagctcaactgtactcaactgagctgcatcaatatga
actgtgtgtacctctatccctgcactgttcttatgtaccttctttttcct
gtctcttcctgttagagtcgggcatatcctatttctgattcattctgtca
aacctttctcctatttactactttgtctgcccctcaatagatgtcattgt
ttgggataaaggtgtgtactaaaggtgtgtttgtatttgatgcgtatggg
tgaaaggtgtgtgatgtgtctaccagatcacacagacttagaaggtcttt
ggacgtgcagattctttgccagagcagccatgttgctgggttaaaaatcc
tctacaccttgcaatttgaataatgacttaagtgagaaacaaggacagaa
cacaggtcataaaaatccaacaaaaattgtacaaaaggctgacctgtcag
aaagcattatcatgattgggggaaaaaaagagcaaataaagaattgtaga
atagaaatttaaagttcattgtctatagatttgaagtgtgcagtagaata
gattcctctgttagtagttactggtattctgttctatctatcatgatatc
catgatatttctggccttcctgttggcgccagcccctggccaccttaggt
gcaaactaggtggacagtcccacggtccccagagaaactctaaatgtcca
gacgccctcttatacccaggatgttaggatgtgagtggaatacagttgtt
ccaaaacaatcatgaggggcctgtgccatctggagcagggacacaggaaa
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_90146575_90147716
seq2: B6Ng01-078L24.b_47_1176

seq1  GAATTCAAAATCTCAAAGAATTAAATGAGAAATTCTATCCATTTTCAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATCTCAAAGAATTAAATGAGAAATTCTATCCATTTTCAAAG  50

seq1  TTTTTTTGATTTTGAATTCCAAAGACTGGCAGAAAAAAAAAACCTTCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGATTTTGAATTCCAAAGACTGGCAGAAAAAAAAAACCTTCTTC  100

seq1  TCTTTCCCTACATCATTTTATTCTCCTGTGACCCATAAGTCCTACCTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCCTACATCATTTTATTCTCCTGTGACCCATAAGTCCTACCTATA  150

seq1  CCTCCCACCTAGTAATTGGATCCCAGCCTTCTTTACTGACAAATCAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCACCTAGTAATTGGATCCCAGCCTTCTTTACTGACAAATCAAGAA  200

seq1  CCAATTAGGGAACTAGACCTTAGTATCAATCCCTCCCCTTACATGTGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTAGGGAACTAGACCTTAGTATCAATCCCTCCCCTTACATGTGGCA  250

seq1  ATTAATTTGTTTCATACACATTCTATGCACAAACATCTTTCAGCAAAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTGTTTCATACACATTCTATGCACAAACATCTTTCAGCAAAGTA  300

seq1  AAAACATCAGATTGTATGTGATCTCTATTACACATCAGAATACTTTACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATCAGATTGTATGTGATCTCTATTACACATCAGAATACTTTACAG  350

seq1  AAAATAAATGATGCATATGA--ACACACACACACACACACACACACACAC  398
      ||||||||||||||||||||  ||||||||||||||||||||||||||||
seq2  AAAATAAATGATGCATATGAACACACACACACACACACACACACACACAC  400

seq1  ACACACACACACACACAGACTTTCTTACCTTCCAATTGGCATGAAAGGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACAGACTTTCTTACCTTCCAATTGGCATGAAAGGAG  450

seq1  TTAACAAACTGATACGATAGTGTGGGACCAAGGAGCCATACACAGAATGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAACTGATACGATAGTGTGGGACCAAGGAGCCATACACAGAATGG  500

seq1  TCGTTAAGAAGCTAGGCAGTTGCAAGCACAACAAAAACAATATCATGGGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTAAGAAGCTAGGCAGTTGCAAGCACAACAAAAACAATATCATGGGA  550

seq1  AAGTTCCAAACCACTTCCCTAATTCACTTATTTTTTTGGAAAATGTAAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCAAACCACTTCCCTAATTCACTTATTTTTTTGGAAAATGTAAAA  600

seq1  GTAAACCTTCCCACTTCTGTATTTTTTAGTAAGAGTGGCATGCAGGTAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACCTTCCCACTTCTGTATTTTTTAGTAAGAGTGGCATGCAGGTAAG  650

seq1  ATGGGTGCCGCTGATAAAATGAAGTCTACATGGAGACTGGCTGAGAGCTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTGCCGCTGATAAAATGAAGTCTACATGGAGACTGGCTGAGAGCTG  700

seq1  AGTGACCACAACTTAGCCTTTGAGAACACTTGTTTTAGTTTTCTTCTTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACCACAACTTAGCCTTTGAGAACACTTGTTTTAGTTTTCTTCTTTG  750

seq1  CTGCTGCAATAAAATAGTGACCATAAGTATCTTAGAGGAGGAAGGACTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCAATAAAATAGTGACCATAAGTATCTTAGAGGAGGAAGGACTTT  800

seq1  ATCTGGAAATATTATGGTCCATCATTGAGGGAAATC-AAGGCAGGAAATT  847
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATCTGGAAATATTATGGTCCATCATTGAGGGAAATCAAAGGCAGGAAATT  850

seq1  AAGACAGTAGGAGCATGAATGCAAAAACCAAAGCAATGACCATGGGAAAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGTAGGAGCATGAATGCAAAAACCAAAGCAATGACCATGGGAAAC  900

seq1  AGTGTTTAAAGCCTTGCTTCTCCTGGATTGCACAACTGCTATTCTTATTC  947
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGTGTTTAAAGCCTTGCTTCTCCT-GATTGCACAACTGCTATTCTTATTC  949

seq1  TTGCTTCCCATCTGCTCAGGAATGGTGGCACTTACCTTGGCCTGGGATTC  997
      |||||||||||||||||| |||||   |||||||||||||||| ||||||
seq2  TTGCTTCCCATCTGCTCA-GAATG--TGCACTTACCTTGGCCT-GGATTC  995

seq1  CACATCAATCGACAATGAAGAAAATTCTCCAAAGAAGTGATCACAGGCCG  1047
      |||||| |||||| |||||||||||||||||||| ||||||||||| |||
seq2  CACATC-ATCGAC-ATGAAGAAAATTCTCCAAAGGAGTGATCACAGCCCG  1043

seq1  TTCTGATGTGAGTAATTCCTCAACTGAAATCCTGTCTTCCC-AGGCACTA  1096
      ||||||||||||||  ||    |||| |||||||||||||| ||||||||
seq2  TTCTGATGTGAGTATCTC----ACTGGAATCCTGTCTTCCCAAGGCACTA  1089

seq1  AAATTCAGTAATAGTTCTCTTATCCACTCTTTCTGCACATGTGCTC  1142
      ||  ||||| |||| |||||||||||||| ||||||||||||||||
seq2  AA--TCAGT-ATAG-TCTCTTATCCACTC-TTCTGCACATGTGCTC  1130


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