BAC Information

Click to search

BAC

Clone NameB6Ng01-079K09
Chromosome17 (Build37)
Map Location 26,543,743 - 26,634,493
singlet/doubletdoublet
Overlap geneEG240055, C230078M08Rik
Upstream geneCacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229
Downstream geneDusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430, Grm4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079K09.bB6Ng01-079K09.g
ACCDH894998DH894999
length1,1391,179
definitionDH894998|Mus musculus domesticus DNA, BAC clone: B6Ng01-079K09, 5' end.DH894999|Mus musculus domesticus DNA, BAC clone: B6Ng01-079K09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,633,357 - 26,634,493)(26,543,743 - 26,544,958)
sequence
gaattcccctgcctgtgggcctttgctgaggtggagggtagtaactcatg
catggggaagtcagtggggacgctcctggctctgactcatagcttcttgt
ctggtaggaagacttaacagcccacgtctcctcttggaaatgtcctttgt
ttagtggccattggggattctcctctggcctcctatacagctcttggcca
accttcctgtcattcattgctctttgtcagttcctcaataaagaagagag
ttgatctgtgtgggatgctgagggaagggggcgagaacagccattttcta
gctcccacccaaatgatggcatgacacttgggttggagggctgaaggaac
atttgaggcacctgtctagagtgggtaagcactgtgcttgtggggtggga
gcagatgatggtggtctgctatgagtagtgctagagacatcacggcaggt
acttgaccaagacaagaattccattcacattaccaacccttcctgagtga
gaagtgccatgccttttgctggacattaaccatagaaagacggagataca
taggggtgactctaacttctggttctctctgctgttggtaagtagtcacg
accacattgcttcaggaatgtgtaggagggatagtggtccaggaacagag
agctgccggaggagaccaggtaggaagactacatggaggaagaggcgacc
attcattttagacgcctggagacatggcataggaagggcttcttagtccc
agaatgtgtagagagtctggagccttggctttatgtaaggaataaagagt
tcctggagttgttcctgggccccttcttctccagaaccgcatcccaagag
gctcatgcaccgttcagctctcacaaagggtggggcagagcagtgttgct
tcctaccctggtaacattcacagaatgggcagctagtgtccctgagaaga
cagaagaaagctgatctggttaggacttgtggcctctgctatctcctaag
tactgctgttagatgtagtttctaccattttgtcagtaactcagatgggg
agtgttgccgaagcttgctgggcagcctctaaagcttatcactgtcccga
ctcttactgggaacttaaatacttgtctgtttctttgga
gaattcccatgtgacttgaaggcagtgcctgctgccaaggagagcagccc
cagtagccccttggccagatgacaccctggttcccttacccaactcacca
ctctggtgttacatcagctggtattggcaattattcctagcctttattta
gcagatgcagaaatgaagttcagggaggcaagggatgtgttcaaacttcc
acagcagagctgacaccctcacccctccagttgtcggtcaagctcttctg
cagtactccaggaccctacctttcaccctggcctggaaggtgcaagccga
gaagaccatgaagcttggggcagctcccctcagtcccagatctgactctg
tgagaccaccttgcatctccctggcagttctctggctgctgagaatagtc
tggctttactcggaatagtcccactgtggatttcagagctgagacactca
cagctcaggagagactgcaatgagatttctctaaaagacaataaactttc
aggcctccataagccccctccgtcgggtcttgcccaccataccatgccca
gatgaccaccacctcatgtcacccctcctcgctccagaatgtctcttctg
tcagtttggcttgacccagtggtcagtgtgacggccgtatcatggagact
ggcttagttatagtactgatgatactgtctaatagatacctaaaggatac
aggtaaatagaaatgcatgctgaacaggcataaataaacactggatataa
atagttcaatgtgtaatagatattgctaaatggtttttccaaaatatgta
attactttataccccatcagccatgtaagatttcctggtttcccacagtc
tagtcaacactgagtattatcaagatgttgagtttcagccagtcagttgg
ggtgctgttgctctcttctttgtaactttagtttttgtttctctgatcat
tgatgagatcagtaccttcagctcactggccactaaatattttgtgaata
tctggatttgccccttttatatcattcacacccaaatgctgttattagtt
atagtttggcatattgagctgcagtcaagtggggtccttcctcattctct
ccacttagttttgaaaacaggtgaacttagcttatccctcccgaccatca
agcaaggctagacatgctgccatgctccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_26633357_26634493
seq2: B6Ng01-079K09.b_47_1185 (reverse)

seq1  TCCAAAGTGAACAGACACGTATTTAGGTTTTCCCAGTAAGAGTCGAG-CA  49
      |||||||  |||||||| ||||||| |  |||||||||||||||| | ||
seq2  TCCAAAG-AAACAGACAAGTATTTAAG--TTCCCAGTAAGAGTCGGGACA  47

seq1  GTGATAAGCTATAGGAGGCTGGCCAGCAAAGCTTTCGGCAACACT-CCCA  98
      |||||||||| || ||||||| ||||| |||| |||||||||||| ||||
seq2  GTGATAAGCTTTA-GAGGCTGCCCAGC-AAGC-TTCGGCAACACTCCCCA  94

seq1  TCTGAGTTACTGACAAAATGGTAGAAACTACATCTAACAGCAGTAC-TAA  147
      |||||||||||||||||||||||||||||||||||||||||||||| || 
seq2  TCTGAGTTACTGACAAAATGGTAGAAACTACATCTAACAGCAGTACTTAG  144

seq1  GAGAATGCAGAGGCCAC-AGTCCTAACCAGATCAGCTTTCTTCTGTCTTC  196
      ||||  ||||||||||| ||||||||||||||||||||||||||||||||
seq2  GAGATAGCAGAGGCCACAAGTCCTAACCAGATCAGCTTTCTTCTGTCTTC  194

seq1  TCA-GGACACTAGCTGCCCATTCTGTG-ATGTATCCAGGGTAGGAAGC-A  243
      ||| ||||||||||||||||||||||| ||||  |||||||||||||| |
seq2  TCAGGGACACTAGCTGCCCATTCTGTGAATGTTACCAGGGTAGGAAGCAA  244

seq1  CACTGCTCTGCCCCACCCTTTGTGAGAGCTGAACGGTGCATGAGCCTCTT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTCTGCCCCACCCTTTGTGAGAGCTGAACGGTGCATGAGCCTCTT  294

seq1  GGGATGCGGTTCTGGAGAAGAAGGGGCCCAGGAACAACTCCAGGAACTC-  342
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGGATGCGGTTCTGGAGAAGAAGGGGCCCAGGAACAACTCCAGGAACTCT  344

seq1  TTATTCCTTACATAAAGCCAAGGCTCCAGACTCTCTACACATTCTGGGAC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCTTACATAAAGCCAAGGCTCCAGACTCTCTACACATTCTGGGAC  394

seq1  TAAGAAGCCCTTCCTATGCCATGTCTCCAGGCGTCTAAAATGAATGGTCG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGCCCTTCCTATGCCATGTCTCCAGGCGTCTAAAATGAATGGTCG  444

seq1  CCTCTTCCTCCATGTAGTCTTCCTACCTGGTCTCCTCCGGCAGCTCTCTG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCCTCCATGTAGTCTTCCTACCTGGTCTCCTCCGGCAGCTCTCTG  494

seq1  TTCCTGGACCACTATCCCTCCTACACATTCCTGAAGCAATGTGGTCGTGA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGACCACTATCCCTCCTACACATTCCTGAAGCAATGTGGTCGTGA  544

seq1  CTACTTACCAACAGCAGAGAGAACCAGAAGTTAGAGTCACCCCTATGTAT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTACCAACAGCAGAGAGAACCAGAAGTTAGAGTCACCCCTATGTAT  594

seq1  CTCCGTCTTTCTATGGTTAATGTCCAGCAAAAGGCATGGCACTTCTCACT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGTCTTTCTATGGTTAATGTCCAGCAAAAGGCATGGCACTTCTCACT  644

seq1  CAGGAAGGGTTGGTAATGTGAATGGAATTCTTGTCTTGGTCAAGTACCTG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGGGTTGGTAATGTGAATGGAATTCTTGTCTTGGTCAAGTACCTG  694

seq1  CCGTGATGTCTCTAGCACTACTCATAGCAGACCACCATCATCTGCTCCCA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGATGTCTCTAGCACTACTCATAGCAGACCACCATCATCTGCTCCCA  744

seq1  CCCCACAAGCACAGTGCTTACCCACTCTAGACAGGTGCCTCAAATGTTCC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACAAGCACAGTGCTTACCCACTCTAGACAGGTGCCTCAAATGTTCC  794

seq1  TTCAGCCCTCCAACCCAAGTGTCATGCCATCATTTGGGTGGGAGCTAGAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCCCTCCAACCCAAGTGTCATGCCATCATTTGGGTGGGAGCTAGAA  844

seq1  AATGGCTGTTCTCGCCCCCTTCCCTCAGCATCCCACACAGATCAACTCTC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTGTTCTCGCCCCCTTCCCTCAGCATCCCACACAGATCAACTCTC  894

seq1  TTCTTTATTGAGGAACTGACAAAGAGCAATGAATGACAGGAAGGTTGGCC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATTGAGGAACTGACAAAGAGCAATGAATGACAGGAAGGTTGGCC  944

seq1  AAGAGCTGTATAGGAGGCCAGAGGAGAATCCCCAATGGCCACTAAACAAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTGTATAGGAGGCCAGAGGAGAATCCCCAATGGCCACTAAACAAA  994

seq1  GGACATTTCCAAGAGGAGACGTGGGCTGTTAAGTCTTCCTACCAGACAAG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATTTCCAAGAGGAGACGTGGGCTGTTAAGTCTTCCTACCAGACAAG  1044

seq1  AAGCTATGAGTCAGAGCCAGGAGCGTCCCCACTGACTTCCCCATGCATGA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATGAGTCAGAGCCAGGAGCGTCCCCACTGACTTCCCCATGCATGA  1094

seq1  GTTACTACCCTCCACCTCAGCAAAGGCCCACAGGCAGGGGAATTC  1137
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTACCCTCCACCTCAGCAAAGGCCCACAGGCAGGGGAATTC  1139

seq1: chr17_26543743_26544958
seq2: B6Ng01-079K09.g_71_1249

seq1  GAATTCCCATGTGACTTGAAGGCAGTGCCTGCTGCCAAGGAGAGCAGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATGTGACTTGAAGGCAGTGCCTGCTGCCAAGGAGAGCAGCCC  50

seq1  CAGTAGCCCCTTGGCCAGATGACACCCTGGTTCCCTTACCCAACTCACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGCCCCTTGGCCAGATGACACCCTGGTTCCCTTACCCAACTCACCA  100

seq1  CTCTGGTGTTACATCAGCTGGTATTGGCAATTATTCCTAGCCTTTATTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTGTTACATCAGCTGGTATTGGCAATTATTCCTAGCCTTTATTTA  150

seq1  GCAGATGCAGAAATGAAGTTCAGGGAGGCAAGGGATGTGTTCAAACTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGCAGAAATGAAGTTCAGGGAGGCAAGGGATGTGTTCAAACTTCC  200

seq1  ACAGCAGAGCTGACACCCTCACCCCTCCAGTTGTCGGTCAAGCTCTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGAGCTGACACCCTCACCCCTCCAGTTGTCGGTCAAGCTCTTCTG  250

seq1  CAGTACTCCAGGACCCTACCTTTCACCCTGGCCTGGAAGGTGCAAGCCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTCCAGGACCCTACCTTTCACCCTGGCCTGGAAGGTGCAAGCCGA  300

seq1  GAAGACCATGAAGCTTGGGGCAGCTCCCCTCAGTCCCAGATCTGACTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCATGAAGCTTGGGGCAGCTCCCCTCAGTCCCAGATCTGACTCTG  350

seq1  TGAGACCACCTTGCATCTCCCTGGCAGTTCTCTGGCTGCTGAGAATAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCACCTTGCATCTCCCTGGCAGTTCTCTGGCTGCTGAGAATAGTC  400

seq1  TGGCTTTACTCGGAATAGTCCCACTGTGGATTTCAGAGCTGAGACACTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTACTCGGAATAGTCCCACTGTGGATTTCAGAGCTGAGACACTCA  450

seq1  CAGCTCAGGAGAGACTGCAATGAGATTTCTCTAAAAGACAATAAACTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAGGAGAGACTGCAATGAGATTTCTCTAAAAGACAATAAACTTTC  500

seq1  AGGCCTCCATAAGCCCCCTCCGTCGGGTCTTGCCCACCATACCATGCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTCCATAAGCCCCCTCCGTCGGGTCTTGCCCACCATACCATGCCCA  550

seq1  GATGACCACCACCTCATGTCACCCCTCCTCGCTCCAGAATGTCTCTTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACCACCACCTCATGTCACCCCTCCTCGCTCCAGAATGTCTCTTCTG  600

seq1  TCAGTTTGGCTTGACCCAGTGGTCAGTGTGACGGCCGTATCATGGAGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTGGCTTGACCCAGTGGTCAGTGTGACGGCCGTATCATGGAGACT  650

seq1  GGCTTAGTTATAGTACTGATGATACTGTCTAATAGATACCTAAAGGATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAGTTATAGTACTGATGATACTGTCTAATAGATACCTAAAGGATAC  700

seq1  AGGTAAATAGAAATGCATGCTGAACAGGCATAAATAAACACTGGATATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAATAGAAATGCATGCTGAACAGGCATAAATAAACACTGGATATAA  750

seq1  ATAGTTCAATGTGTAATAGATATTGCTAAATGGTTTTTCCAAAATATGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCAATGTGTAATAGATATTGCTAAATGGTTTTTCCAAAATATGTA  800

seq1  ATTACTTTATACCCCATCAGCCATGTAAGATTTCCTGGTTTCCCACAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTTATACCCCATCAGCCATGTAAGATTTCCTGGTTTCCCACAGTC  850

seq1  TAGTCAACACTGAGTATTATCAAGATGTTGAGTTTCAGCCAGTCAGTTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAACACTGAGTATTATCAAGATGTTGAGTTTCAGCCAGTCAGTTGG  900

seq1  GGTGCTGTGGCTCTC-TCTTTGTAACTTTAGTTTTTGTTTCTCTGATCAT  949
      |||||||| |||||| ||||||||||||||||||||||||||||||||||
seq2  GGTGCTGTTGCTCTCTTCTTTGTAACTTTAGTTTTTGTTTCTCTGATCAT  950

seq1  TGATGAGATTCAGTACCTTCAGGCTCACTGGCCACTAAAATATTATGGTG  999
      |||||||| |||||||||||| |||||||||||||| ||||||| | |||
seq2  TGATGAGA-TCAGTACCTTCA-GCTCACTGGCCACT-AAATATT-TTGTG  996

seq1  AAATATCTGGATTTTGCCCCCTTTTATATTTCATTCACACCCAAATGCTT  1049
       |||||||||||||   |||||||||||  |||||||||||||||||| |
seq2  -AATATCTGGATTT--GCCCCTTTTATA--TCATTCACACCCAAATGC-T  1040

seq1  GTTATGTAGTTATTAGTTTGGGCATATTTGGAGCCTGCAGGTCAACGTTG  1099
      ||||| |||||| |||||| ||||||||  ||| ||||| ||||| ||  
seq2  GTTAT-TAGTTA-TAGTTT-GGCATATT--GAG-CTGCA-GTCAA-GT--  1080

seq1  GGTGTCTTTCCTCTATCTCTCCACTTTAGTTTTTGAGACAGGGTGAGCCT  1149
      || ||| ||||||  ||||||||| ||||||||  | ||| ||||| | |
seq2  GGGGTCCTTCCTCATTCTCTCCAC-TTAGTTTTGAAAACA-GGTGAACTT  1128

seq1  GAAGCTGTACCCCCTCCCCCGCACCCTATCCCAGTGCAGAGGTCATAGCA  1199
        |||| ||  |||||||    |||  |||     ||| |||   ||| |
seq2  --AGCT-TA-TCCCTCCC---GACC--ATC---AAGCA-AGG--CTAG-A  1162

seq1  CTTGCTGCCATGCTCCC  1216
      | |||||||||||||||
seq2  CATGCTGCCATGCTCCC  1179