BAC Information

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BAC

Clone NameB6Ng01-079N19
Chromosome17 (Build37)
Map Location 22,183,261 - 22,363,854
singlet/doubletdoublet
Overlap geneEG665844, EG210853, LOC671007, EG240038
Upstream geneLOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010
Downstream geneEG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-079N19.bB6Ng01-079N19.g
ACCDH895153DH895154
length1,1431,089
definitionDH895153|Mus musculus domesticus DNA, BAC clone: B6Ng01-079N19, 5' end.DH895154|Mus musculus domesticus DNA, BAC clone: B6Ng01-079N19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,362,709 - 22,363,854)(22,183,261 - 22,184,356)
sequence
gaattcaagtattaccatgtccattttccttaccattctgatcccgaatc
catgaatcccatctgcatggaattttaagtagtataaactcagatcagaa
ggcattttatttttcctggctatcaaaattctgttgtactatcactgtat
ttttgcttacaggaactggggctgacgctggtgttttcattcatgttatg
attgtcagacaatttataggaaaatatttgtgcaaactatttgcattatc
tattttctttgctattgtggccatgacaaatatcttggagtttaacttta
tcagtgctttccactaccctgttatacagcttttgtttctacagagtgac
ctttgtccctggagctccccagagagcttgcagagcaccctcccatcatt
ctctgtcccatctgtctttatccacattttcatctcagtggtccctctta
tacttcatgtatgctttgatacatggtttggaaggaagccaaactttgtg
agtcatttttagtattgtgtgttggggtgcaacataagaaattggaattt
atctcttaaactcttgtctcccttgcctctacctccctagtgcctctccc
tgccctccattcctttccaccctctttccaggagggcatggccagcctcc
acttacctactctctccttctgtctttctctgcctctactactctcttaa
ctcccatccgcatgccctaaataaactctattctatactttaaaaaaaaa
aaagaaaaggaatttaacgcctaggttatattttgctgtgcgattgtagc
cgaggaggctagcgtcccaagctaagaagttgggctgcctatttattatc
tgagggtttcagaactacctctcagatgtcagagtgcagcatcatacaga
accagtttttcctagtctgtcagcaagcagcagggaggttgtgcagagca
ggtccacaggtgggagctgtgaggcaggaagccaatgactgggtggggag
gaatggaatcctcggggcagggataaaggcaggaccaggacattgaccag
aaaggaaaaagtattaaaattaagggtggagaagcgcttgctcacaaatg
gtttgggggaaccacgtgaccttagtatggttattgggcgggt
gaattctttgttcagttctgagccccattttttaattgggttatttgatt
ttctgaagtccaccttcttgagttctttacatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtcaggttaacttttaaataaactcacaaaatac
tagaaggaagcagaaggaaagttctggagcctgcagaggaacagaagcta
ctgttcacaggagaagttttagtaattggaagaagacactatcttatatc
ttacatgatgcccaagatcactgtgtggtcctgcagcacaagtatatggc
ccatagtggtgacagttcctctcagtaaaaatgctggcacagaaatagat
gcaattattctgctgccctctgtccatgtatgcagcaggaggcactccat
acctacaaatatgctgacagttcctaagcatcttcctaaagaggactcct
ggacaaatgcagtttcaggacatggatggccctgctgggtgtcctcagta
gggtagcatgcttgctctgtttctaaactatagaaaaatacactacagta
gcaaacaggcatctttccctcctatgtcatgtcctctcaagcaagctctt
tctccttcttcttactcctcttccctatcatacatcattcctattctttc
ttctttataattccaaagatatgggaagccattgacagattttaattcag
tctcagcttatgccattgtttgcaataagaccagatggacaacaggttta
acttttagcagtaaaaccaagaaatactagaaaacatgaatgattttgaa
tagtgaacacatgaacagaatccctaagcaaacaaaagggagggtcatta
atatttattattataaatattattacagtagagtatacccaggcaagtaa
aatcaaacacacacacatcagacgagcagagggtttataaaacagttaca
ctaaatacacccttgatatagcagtctacaggatgatgggacaaaaattg
agagagaatgcaagggatattttcttacaagagaaagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_22362709_22363854
seq2: B6Ng01-079N19.b_47_1189 (reverse)

seq1  ACCCGCCCAATAAACCATACTTAGGGTCACGTGGTTCCCCCAAACACTTT  50
      ||||||||||| |||||||| || |||||||||||||||||||||  |||
seq2  ACCCGCCCAAT-AACCATAC-TAAGGTCACGTGGTTCCCCCAAACCATTT  48

seq1  GTGAGCAAGCGCTTTCTCAACCTTAATTTTTAATACTTTTTTTCCTGTCT  100
      |||||||||||| ||||| ||| | | |||||||||  |||||||| |||
seq2  GTGAGCAAGCGC-TTCTCCACCCTTAATTTTAATAC--TTTTTCCTTTCT  95

seq1  GGTCAATGTCCTGGTCTTGCCTTTATCCCTGCCCCGGGGATTCCATTCCC  150
      |||||||||||||||| ||||||||||||||||||| |||||||||||| 
seq2  GGTCAATGTCCTGGTCCTGCCTTTATCCCTGCCCCGAGGATTCCATTCCT  145

seq1  TCCCACTCAGTCATTGGCTTCCTGCCTCACAGCT-CCACCTGTGGACCTG  199
       ||||| ||||||||||||||||||||||||||| |||||||||||||||
seq2  CCCCACCCAGTCATTGGCTTCCTGCCTCACAGCTCCCACCTGTGGACCTG  195

seq1  CTCTGCACAACCTCCCTGCTGCTTGCTGACAGACTAGGAAAAACTGGTTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCACAACCTCCCTGCTGCTTGCTGACAGACTAGGAAAAACTGGTTC  245

seq1  TGTATGATGCTGCACTCTGACATCTGAGAGGTAGTTCTGAAACCCTCAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGATGCTGCACTCTGACATCTGAGAGGTAGTTCTGAAACCCTCAGA  295

seq1  TAATAAATAGGCAGCCCAACTTCTTAGCTTGGGACGCTAGCCTCCTCGGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATAGGCAGCCCAACTTCTTAGCTTGGGACGCTAGCCTCCTCGGC  345

seq1  TACAATCGCACAGCAAAATATAACCTAGGCGTTAAATTCCTTTTC-TTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TACAATCGCACAGCAAAATATAACCTAGGCGTTAAATTCCTTTTCTTTTT  395

seq1  TTTTTTTAAAGTATAGAATAGAGTTTATTTAGGGCATGCGGATGGGAGTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAAAGTATAGAATAGAGTTTATTTAGGGCATGCGGATGGGAGTT  445

seq1  AAGAGAGTAGTAGAGGCAGAGAAAGACAGAAGGAGAGAGTAGGTAAGTGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGTAGTAGAGGCAGAGAAAGACAGAAGGAGAGAGTAGGTAAGTGG  495

seq1  AGGCTGGCCATGCCCTCCTGGAAAGAGGGTGGAAAGGAATGGAGGGCAGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCCATGCCCTCCTGGAAAGAGGGTGGAAAGGAATGGAGGGCAGG  545

seq1  GAGAGGCACTAGGGAGGTAGAGGCAAGGGAGACAAGAGTTTAAGAGATAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCACTAGGGAGGTAGAGGCAAGGGAGACAAGAGTTTAAGAGATAA  595

seq1  ATTCCAATTTCTTATGTTGCACCCCAACACACAATACTAAAAATGACTCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAATTTCTTATGTTGCACCCCAACACACAATACTAAAAATGACTCA  645

seq1  CAAAGTTTGGCTTCCTTCCAAACCATGTATCAAAGCATACATGAAGTATA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTTGGCTTCCTTCCAAACCATGTATCAAAGCATACATGAAGTATA  695

seq1  AGAGGGACCACTGAGATGAAAATGTGGATAAAGACAGATGGGACAGAGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGACCACTGAGATGAAAATGTGGATAAAGACAGATGGGACAGAGAA  745

seq1  TGATGGGAGGGTGCTCTGCAAGCTCTCTGGGGAGCTCCAGGGACAAAGGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGAGGGTGCTCTGCAAGCTCTCTGGGGAGCTCCAGGGACAAAGGT  795

seq1  CACTCTGTAGAAACAAAAGCTGTATAACAGGGTAGTGGAAAGCACTGATA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTGTAGAAACAAAAGCTGTATAACAGGGTAGTGGAAAGCACTGATA  845

seq1  AAGTTAAACTCCAAGATATTTGTCATGGCCACAATAGCAAAGAAAATAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAAACTCCAAGATATTTGTCATGGCCACAATAGCAAAGAAAATAGA  895

seq1  TAATGCAAATAGTTTGCACAAATATTTTCCTATAAATTGTCTGACAATCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCAAATAGTTTGCACAAATATTTTCCTATAAATTGTCTGACAATCA  945

seq1  TAACATGAATGAAAACACCAGCGTCAGCCCCAGTTCCTGTAAGCAAAAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGAATGAAAACACCAGCGTCAGCCCCAGTTCCTGTAAGCAAAAAT  995

seq1  ACAGTGATAGTACAACAGAATTTTGATAGCCAGGAAAAATAAAATGCCTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGATAGTACAACAGAATTTTGATAGCCAGGAAAAATAAAATGCCTT  1045

seq1  CTGATCTGAGTTTATACTACTTAAAATTCCATGCAGATGGGATTCATGGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCTGAGTTTATACTACTTAAAATTCCATGCAGATGGGATTCATGGA  1095

seq1  TTCGGGATCAGAATGGTAAGGAAAATGGACATGGTAATACTTGAATTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGGATCAGAATGGTAAGGAAAATGGACATGGTAATACTTGAATTC  1143

seq1: chr17_22183261_22184356
seq2: B6Ng01-079N19.g_69_1157

seq1  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATTGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATTGGGTTATTTGATT  50

seq1  TTCTGAAGTCCACCTTCTTGAGTTCTTTACATATGTTGGATATTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGTCCACCTTCTTGAGTTCTTTACATATGTTGGATATTAGTCCC  100

seq1  CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT  150

seq1  TTTTGTCTTATTGACGGTCAGGTTAACTTTTAAATAAACTCACAAAATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTATTGACGGTCAGGTTAACTTTTAAATAAACTCACAAAATAC  200

seq1  TAGAAGGAAGCAGAAGGAAAGTTCTGGAGCCTGCAGAGGAACAGAAGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGAAGCAGAAGGAAAGTTCTGGAGCCTGCAGAGGAACAGAAGCTA  250

seq1  CTGTTCACAGGAGAAGTTTTAGTAATTGGAAGAAGACACTATCTTATATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCACAGGAGAAGTTTTAGTAATTGGAAGAAGACACTATCTTATATC  300

seq1  TTACATGATGCCCAAGATCACTGTGTGGTCCTGCAGCACAAGTATATGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGATGCCCAAGATCACTGTGTGGTCCTGCAGCACAAGTATATGGC  350

seq1  CCATAGTGGTGACAGTTCCTCTCAGTAAAAATGCTGGCACAGAAATAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGTGGTGACAGTTCCTCTCAGTAAAAATGCTGGCACAGAAATAGAT  400

seq1  GCAATTATTCTGCTGCCCTCTGTCCATGTATGCAGCAGGAGGCACTCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTATTCTGCTGCCCTCTGTCCATGTATGCAGCAGGAGGCACTCCAT  450

seq1  ACCTACAAATATGCTGACAGTTCCTAAGCATCTTCCTAAAGAGGACTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACAAATATGCTGACAGTTCCTAAGCATCTTCCTAAAGAGGACTCCT  500

seq1  GGACAAATGCAGTTTCAGGACATGGATGGCCCTGCTGGGTGTCCTCAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAATGCAGTTTCAGGACATGGATGGCCCTGCTGGGTGTCCTCAGTA  550

seq1  GGGTAGCATGCTTGCTCTGTTTCTAAACTATAGAAAAATACACTACAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGCATGCTTGCTCTGTTTCTAAACTATAGAAAAATACACTACAGTA  600

seq1  GCAAACAGGCATCTTTCCCTCCTATGTCATGTCCTCTCAAGCAAGCTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAGGCATCTTTCCCTCCTATGTCATGTCCTCTCAAGCAAGCTCTT  650

seq1  TCTCCTTCTTCTTACTCCTCTTCCCTATCATACATCATTCCTATTCTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCTTCTTACTCCTCTTCCCTATCATACATCATTCCTATTCTTTC  700

seq1  TTCTTTATAATTCCAAAGATATGGGAAGCCATTGACAGATTTTAATTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATAATTCCAAAGATATGGGAAGCCATTGACAGATTTTAATTCAG  750

seq1  TCTCAGCTTATGCCATTGTTTGCAATAAGACCAGATGGACAACAGG-TTA  799
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCTCAGCTTATGCCATTGTTTGCAATAAGACCAGATGGACAACAGGTTTA  800

seq1  ACTTTTAGCAGTAAAACCAAGAAATACTAGAAAACATGAATGATTTTGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAGCAGTAAAACCAAGAAATACTAGAAAACATGAATGATTTTGAA  850

seq1  TAGTGAACACATGAACAGAATCCCTAAGCAAACAAAAGGGAGGGTCATTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAACACATGAACAGAATCCCTAAGCAAACAAAAGGGAGGGTCATTA  900

seq1  ATATTTATTATTATAAATATTATTACAAGTAGAAGTATACCCAGGCAAGT  949
      |||||||||||||||||||||||||| ||||| |||||||||||||||||
seq2  ATATTTATTATTATAAATATTATTAC-AGTAG-AGTATACCCAGGCAAGT  948

seq1  AAAAATCAAACACACACACATCAGACGAGCAAGAAGGGTTTATAAAACAG  999
       ||||||||||||||||||||||||||||||   ||||||||||||||||
seq2  -AAAATCAAACACACACACATCAGACGAGCA--GAGGGTTTATAAAACAG  995

seq1  TTAACACTAAATACACCCTTGATATAGCAGTCTACAGGGATGATGGGACA  1049
      || ||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TT-ACACTAAATACACCCTTGATATAGCAGTCTACA-GGATGATGGGACA  1043

seq1  AAAA-TGAGAGAGAAATGCAAAGGGATATTT--CTACAAAGAAGAAAGCA  1096
      |||| |||||||| ||||| |||||||||||   |||||   ||||||||
seq2  AAAATTGAGAGAG-AATGC-AAGGGATATTTTCTTACAA--GAGAAAGCA  1089