BAC Information

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BAC

Clone NameB6Ng01-080B08
Chromosome17 (Build37)14 (Build37)
Map Location 55,184,684 - 55,184,760110,681,387 - 110,681,717
singlet/doubletsingletsinglet
Overlap geneEG629178
Upstream geneSlc5a7, LOC668529, 1700025K24Rik, Trp53-ps, LOC240117
Downstream geneLOC100043833, LOC100043485, LOC677496, St6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080B08.bB6Ng01-080B08.g
ACCDH895319DH895320
length773331
definitionDH895319|Mus musculus domesticus DNA, BAC clone: B6Ng01-080B08, 5' end.DH895320|Mus musculus domesticus DNA, BAC clone: B6Ng01-080B08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(55,184,684 - 55,184,760)(110,681,387 - 110,681,717)
sequence
caatggtctagggggaaggtgaactatacaatagactagattaggaacta
tggcaagggcatgaagcccttgcccctggcttctaagattaagctaacct
taggtgggactgcatttgaatcccagttgttaacattgaattttatccca
gttggttcctgccagtccttccttgtttgcattcctctgctttatgtaag
aattcggtaacctcattgcaccttgtcagtgtgtcacctaacttccctat
tttcttctgtataaaacgtgtgatgctcaatttgacaaattacattcaga
tccacactcccttgagtcgagtctgtttgtcaccccattcctgtagactc
tatgctcatctgccagaacccctgattcccacagattgactaagccgggt
ctgtggcatggatactagcccagaagctcagaataccgaagatacagttc
ataaaccgcatgaaactcaagaagaaggaagacaaaagtgtggatacttc
gatccttcttagaagtgaggacaaaatacccatggaaggagttacaaaga
caaagtgtggagcagagagtgaaggaatgattgtccaaagactgcctcgc
ctggggatacatcccatataaaatcttcaaacccagagactattgtggat
gccaacaagtgcttgctgacaggaacctaaaatacctgtcttccaagagg
ctctgccagtgccaggcaaatacagaagtagatgcttcacagtcatccat
tggactgagcacagggtccccaa
cttctgcattcctatctctgcttactgaatgtgtgtccaatatgagttgt
tatcttaaactgtcatagaatgtctttgaatttacatggcaaaataatag
ttgctttcttaggagtttttttttttttttttttggggggggggaaaggg
tctatagcaacaggagtagacattaattaagacaaatggtacctacaagt
gggcctattctgtgacagaactggttttgtgatgtatatgcctttggagc
tactttgtgtggcatgtgaaagaatttagaactgtatggtataaaagagc
tgctggaattctcttggctttttgtattttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_55184684_55184760
seq2: B6Ng01-080B08.b_740_817 (reverse)

seq1  TTGGGGACCCTGTGCTCCGTCCAATGGATGACAGTG-AGAATCCACTTCT  49
      ||||||||||||||||| |||||||||||||| ||| || ||| ||||||
seq2  TTGGGGACCCTGTGCTCAGTCCAATGGATGACTGTGAAGCATCTACTTCT  50

seq1  GTATTTGCCAGGCACTGGCAGAGTCTCT  77
      ||||||||| ||||||||||||| ||||
seq2  GTATTTGCCTGGCACTGGCAGAGCCTCT  78

seq1: chr14_110681387_110681717
seq2: B6Ng01-080B08.g_76_406

seq1  CTTCTGCATTCCTATCTCTGCTTACTGAATGTGTGTCCAATATGAGTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCATTCCTATCTCTGCTTACTGAATGTGTGTCCAATATGAGTTGT  50

seq1  TATCTTAAACTGTCATAGAATGTCTTTGAATTTACATGGCAAAATAATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTAAACTGTCATAGAATGTCTTTGAATTTACATGGCAAAATAATAG  100

seq1  TTGCTTTCTTAGGAGTTTTTTTTTTTTTTTTTTTGGGGGGGGGGAAAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTCTTAGGAGTTTTTTTTTTTTTTTTTTTGGGGGGGGGGAAAGGG  150

seq1  TCTATAGCAACAGGAGTAGACATTAATTAAGACAAATGGTACCTACAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGCAACAGGAGTAGACATTAATTAAGACAAATGGTACCTACAAGT  200

seq1  GGGCCTATTCTGTGACAGAACTGGTTTTGTGATGTATATGCCTTTGGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTATTCTGTGACAGAACTGGTTTTGTGATGTATATGCCTTTGGAGC  250

seq1  TACTTTGTGTGGCATGTGAAAGAATTTAGAACTGTAGGGTATAAAAGAGC  300
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TACTTTGTGTGGCATGTGAAAGAATTTAGAACTGTATGGTATAAAAGAGC  300

seq1  TGCTGGAATTCTCTTGGCTTTTTGTATTTTT  331
      |||||||||||||||||||||||||||||||
seq2  TGCTGGAATTCTCTTGGCTTTTTGTATTTTT  331