BAC Information

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BAC

Clone NameB6Ng01-080H09
Chromosome17 (Build37)
Map Location 14,047,444 - 14,162,748
singlet/doubletdoublet
Overlap geneEG635895, EG664821
Upstream geneMas1, Mrgprh, Pnldc1, Mrpl18, Tcp1, Acat3, Acat2, Wtap, Sod2, Gpr31c, Tcp10c, Ttll2, Unc93a, Smok2a, Smok2b, LOC667359, LOC100041352, LOC667372, LOC667384, Smok4a, Tcte2, Mllt4, LOC100041464
Downstream geneEG664831, 4930488N24Rik, Dact2, Smoc2, LOC664856, Thbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080H09.bB6Ng01-080H09.g
ACCDH895593DH895594
length1,2011,094
definitionDH895593|Mus musculus domesticus DNA, BAC clone: B6Ng01-080H09, 5' end.DH895594|Mus musculus domesticus DNA, BAC clone: B6Ng01-080H09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,161,525 - 14,162,748)(14,047,444 - 14,048,552)
sequence
gaattcattcatccatagggaaataacaccaggggccatgctggcttgta
tttctaggtctctactatgccacattccttccctggtccctctagagcta
cacacaagcacacacagtgaacacacagtgctccctgcttcatattctga
gagaaaagggggaagactaaaggctgccctgcttattacactggccccaa
tttctgctttacttcttcttttatgttgtaaaatcctaaaggaaagaatt
tgtttcttcttgactatgcaatatcagtacttatgctgacccaatggccc
gtagtcctcctcctcattaatactcctgaaaatcagcaccatcttaggat
gggtaattaaactgcaatgacttgggtggattttcagtggcactatcaag
aatgttaaaattatatgaaggacaattgcttgtataacactttagggaga
aaccaaacgaaccttgctcagttacagcaagagcctgtacaatgaaatga
ccatggtgactttatccagggaatgaatgcaaatgttccataacagatca
aagtcattaattatggacattctgtagtaaaagtagtgtatcagtttctt
ttttaatgactacttaattaaagaaacagttactaacacaaaaggctatt
taacataattgtgagttattagaatgcatactggaaaaattaaataacca
aaagtttctcaacacaggaatcacagcctgcttctctctgggcatacaac
tctgatgcaatgaccagggtgtttcattccagtacctggccagtgctaac
tgggaaaagcatctcgctctgcagcctgaggacttccagaataaacagca
aagcaagaccaccgtaatttaaaacctgcatggctcctgtatgggtactt
cctgagttcctgcagagaccatcactttccacttacattatacctgttaa
agactcataggtaaactgatcctaaactcaaagtctccagactactctgc
tgtacaggagtatgctttagatgcaagtgtgtgactgacaccatcaccct
ctgctcctttcaggagcacatcatgttctatcataatagtatcagattgt
ctagtgactaatccatgttttcataaaagaactttcttaaaatattttat
ctttttgggttgggtctattacagttcagagaccatacagaaatgacatt
a
gaattctctttaagagggtctggatctcctgcaggaatgactagacccat
aagaggaaggacggaatctcctgaaggagagaatgacgggatccctagaa
ggaaggacttagtttcttctttgaagagacaagagcacaggagggttttg
aatcttaattctgaccttgtatttttagcataatggtctgaattccctga
atcctcagctggaaccctgagccaccagcaggaacactgttcctgtccca
gttgtctatgggaggtaaatatacagttcacttctttggctcataaaatc
ccaccattttcttccaatagccaacctccattctccaccatcacatcttt
acataaaatcctttctctccttgaacttctaagactactgatgtcttatg
agcacgtgtgcatggtgtgcgtacacgtgcgcacgctcgcgcgcacacac
catttctatggctttctctataaactcgttttcccaactaggccctctgg
ttccttactgaccaaacgataaaaagtccggagtctaagacttacatccc
tggtagcccttgtggctggtgctgacagaggcttagagccatgggatgtg
ggagggtaccaggccaggccttgctaaggccagcttgtcttgtctctgca
gtatgtgaatgagtctgagccacctgacagttgacagttgacctttctcc
ttgctgagagggtgtctatcccttcttgcactctgttcattcatggtatt
tcagtatgtgcaggtaggtgctgtattgatggattttccttttggatcct
tggttgtaggttaaagaagaaaggatagttgaactgggaccagaaatgat
aatctacaccttgagattgtcagaaggtatgttttgctttgtctgtagat
ttactgaccaacatgtgagtttttatgttgagtcagctactgcagtgcac
aatattttgtaaaggatggtggctttcccttgattttgtcccatcagtga
gtgacacttctgtgtcatcctatctgaacaagatgattctaattatttat
ctttgttggtcacagtatttaatggtacaccacacctgtttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_14161525_14162748
seq2: B6Ng01-080H09.b_46_1246 (reverse)

seq1  TAATAGTCATTTCCTTGATAGTCTCTGTGAACTGTGTAAATAGGACCCCA  50
      |||| ||||||| ||  || |||||  ||||||||   |||| |||||  
seq2  TAAT-GTCATTT-CTGTATGGTCTC--TGAACTGT---AATA-GACCC--  40

seq1  AACCCCAAAAAAGATAAAAATATTTTAAGAAAGTTCTTTTAATGAAAACA  100
      |||||  |||||||| |||||||||||||||||||||||| |||||||| 
seq2  AACCC--AAAAAGAT-AAAATATTTTAAGAAAGTTCTTTT-ATGAAAAC-  85

seq1  ATGGATTAGTCACTAGACAATCTGATACTATTATTGATAG-ACATGATGT  149
      ||||||||||||||||||||||||||||||||| |||||| |||||||||
seq2  ATGGATTAGTCACTAGACAATCTGATACTATTA-TGATAGAACATGATGT  134

seq1  GGCTCCCTGAAAGGAGCAGAGGGTGGATGGTGTTCAGTCACACACTTGCA  199
       ||| ||||||||||||||||||| ||||||| |||||||||||||||||
seq2  -GCT-CCTGAAAGGAGCAGAGGGT-GATGGTG-TCAGTCACACACTTGCA  180

seq1  TCTAAAGCATAACTCTGTTACAGCAGAGTAGTTCTGGAGACTTTGAGTTT  249
      |||||||||| ||||   ||||||||||||| ||||||||||||||| ||
seq2  TCTAAAGCAT-ACTCCTGTACAGCAGAGTAG-TCTGGAGACTTTGAG-TT  227

seq1  TAGGATCAGTTTACCTATGAGTCTTTAACAGGTATAATGTAAGTGGAAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATCAGTTTACCTATGAGTCTTTAACAGGTATAATGTAAGTGGAAAG  277

seq1  TGATGGTCTCTGCAGGAACTCAGGAAGTACCCAATACAGGAGCCATGCAG  349
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGATGGTCTCTGCAGGAACTCAGGAAGTACCC-ATACAGGAGCCATGCAG  326

seq1  GTTTTAAATTACGGTGGTCTTGCTTTGCTGTTTATTCTGGAAGTCCTCAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAATTACGGTGGTCTTGCTTTGCTGTTTATTCTGGAAGTCCTCAG  376

seq1  GCTGCAGAGCGAGATGCTTTTCCCAGTTAGCACTGGCCAGGTACTGGAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGAGCGAGATGCTTTTCCCAGTTAGCACTGGCCAGGTACTGGAAT  426

seq1  GAAACACCCTGGTCATTGCATCAGAGTTGTATGCCCAGAGAGAAGCAGGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACCCTGGTCATTGCATCAGAGTTGTATGCCCAGAGAGAAGCAGGC  476

seq1  TGTGATTCCTGTGTTGAGAAACTTTTGGTTATTTAATTTTTCCAGTATGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTCCTGTGTTGAGAAACTTTTGGTTATTTAATTTTTCCAGTATGC  526

seq1  ATTCTAATAACTCACAATTATGTTAAATAGCCTTTTGTGTTAGTAACTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAATAACTCACAATTATGTTAAATAGCCTTTTGTGTTAGTAACTGT  576

seq1  TTCTTTAATTAAGTAGTCATTAAAAAAGAAACTGATACACTACTTTTACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAATTAAGTAGTCATTAAAAAAGAAACTGATACACTACTTTTACT  626

seq1  ACAGAATGTCCATAATTAATGACTTTGATCTGTTATGGAACATTTGCATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATGTCCATAATTAATGACTTTGATCTGTTATGGAACATTTGCATT  676

seq1  CATTCCCTGGATAAAGTCACCATGGTCATTTCATTGTACAGGCTCTTGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCTGGATAAAGTCACCATGGTCATTTCATTGTACAGGCTCTTGCT  726

seq1  GTAACTGAGCAAGGTTCGTTTGGTTTCTCCCTAAAGTGTTATACAAGCAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTGAGCAAGGTTCGTTTGGTTTCTCCCTAAAGTGTTATACAAGCAA  776

seq1  TTGTCCTTCATATAATTTTAACATTCTTGATAGTGCCACTGAAAATCCAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTTCATATAATTTTAACATTCTTGATAGTGCCACTGAAAATCCAC  826

seq1  CCAAGTCATTGCAGTTTAATTACCCATCCTAAGATGGTGCTGATTTTCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCATTGCAGTTTAATTACCCATCCTAAGATGGTGCTGATTTTCAG  876

seq1  GAGTATTAATGAGGAGGAGGACTACGGGCCATTGGGTCAGCATAAGTACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTAATGAGGAGGAGGACTACGGGCCATTGGGTCAGCATAAGTACT  926

seq1  GATATTGCATAGTCAAGAAGAAACAAATTCTTTCCTTTAGGATTTTACAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGCATAGTCAAGAAGAAACAAATTCTTTCCTTTAGGATTTTACAA  976

seq1  CATAAAAGAAGAAGTAAAGCAGAAATTGGGGCCAGTGTAATAAGCAGGGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAGAAGAAGTAAAGCAGAAATTGGGGCCAGTGTAATAAGCAGGGC  1026

seq1  AGCCTTTAGTCTTCCCCCTTTTCTCTCAGAATATGAAGCAGGGAGCACTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTAGTCTTCCCCCTTTTCTCTCAGAATATGAAGCAGGGAGCACTG  1076

seq1  TGTGTTCACTGTGTGTGCTTGTGTGTAGCTCTAGAGGGACCAGGGAAGGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCACTGTGTGTGCTTGTGTGTAGCTCTAGAGGGACCAGGGAAGGA  1126

seq1  ATGTGGCATAGTAGAGACCTAGAAATACAAGCCAGCATGGCCCCTGGTGT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCATAGTAGAGACCTAGAAATACAAGCCAGCATGGCCCCTGGTGT  1176

seq1  TATTTCCCTATGGATGAATGAATTC  1224
      |||||||||||||||||||||||||
seq2  TATTTCCCTATGGATGAATGAATTC  1201

seq1: chr17_14047444_14048552
seq2: B6Ng01-080H09.g_70_1163

seq1  GAATTCTCTTCAAGAGGGTCTGGATCTCCTGCAGGAATGACTAGACCCAT  50
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTAAGAGGGTCTGGATCTCCTGCAGGAATGACTAGACCCAT  50

seq1  AAGAGGAAGGACGGAATCTCCTGAAGGAGAGAATGACGGGATCCCTAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAAGGACGGAATCTCCTGAAGGAGAGAATGACGGGATCCCTAGAA  100

seq1  GGAAGGACTTAGTTTCTTCTTTGAAGAGACAAGAGCACAGGAGGGTTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGACTTAGTTTCTTCTTTGAAGAGACAAGAGCACAGGAGGGTTTTG  150

seq1  AATCTTAATTCTGACCTTGTATTTTTAGCATAATGGTCTGAATTCCCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTAATTCTGACCTTGTATTTTTAGCATAATGGTCTGAATTCCCTGA  200

seq1  ATCCTCAGCTGGAACCCTGAGCCACCAGCAGGAACACTGTTCCTGTCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCAGCTGGAACCCTGAGCCACCAGCAGGAACACTGTTCCTGTCCCA  250

seq1  GTTGTCTATGGGAGGTAAATATACAGTTCACTTCTTTGGCTCATAAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTATGGGAGGTAAATATACAGTTCACTTCTTTGGCTCATAAAATC  300

seq1  CCACCATTTTCTTCCAATAGCCAACCTCCATTCTCCACCATCACATCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATTTTCTTCCAATAGCCAACCTCCATTCTCCACCATCACATCTTT  350

seq1  ACATAAAATCCTTTCTCTCCTTGAACTTCTAAGACTACTGATGTCTTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAATCCTTTCTCTCCTTGAACTTCTAAGACTACTGATGTCTTATG  400

seq1  AGCACGTGTGCATGGTGTGCGTACACGTGCGCACGCTCGCGCGCACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGTGTGCATGGTGTGCGTACACGTGCGCACGCTCGCGCGCACACAC  450

seq1  CATTTCTATGGCTTTCTCTATAAACTCGTTTTCCCAACTAGGCCCTCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTATGGCTTTCTCTATAAACTCGTTTTCCCAACTAGGCCCTCTGG  500

seq1  TTCCTTACTGACCAAACGATAAAAAGTCCGGAGTCTAAGACTTACATCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTACTGACCAAACGATAAAAAGTCCGGAGTCTAAGACTTACATCCC  550

seq1  TGGTAGCCCTTGTGGCTGGTGCTGACAGAGGCTTAGAGCCATGGGATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGCCCTTGTGGCTGGTGCTGACAGAGGCTTAGAGCCATGGGATGTG  600

seq1  GGAGGGTACCAGGCCAGGCCTTGCTAAGGCCAGCTTGTCTTGTCTCTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGTACCAGGCCAGGCCTTGCTAAGGCCAGCTTGTCTTGTCTCTGCA  650

seq1  GTATGTGAATGAGTCTGAGCCACCTGACAGTTGACAGTTGACC-TTCTCC  699
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTATGTGAATGAGTCTGAGCCACCTGACAGTTGACAGTTGACCTTTCTCC  700

seq1  TTGCTGAGAGGGTGTCTATCCCTTCTTGCACTCTGTTCATTCATGGTATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAGAGGGTGTCTATCCCTTCTTGCACTCTGTTCATTCATGGTATT  750

seq1  TCAGTATGTGCAGGTAGGTGCTGTATTGATGGATTTTTCCTTTTGGATCC  799
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCAGTATGTGCAGGTAGGTGCTGTATTGATGGA-TTTTCCTTTTGGATCC  799

seq1  TTGGTTGTAGGTTAAAGAAGAAAGGATAGTTGAACTGGGACCAGAAAATG  849
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTGGTTGTAGGTTAAAGAAGAAAGGATAGTTGAACTGGGACCAG-AAATG  848

seq1  ATAATCTACACC-TGAGATTGTCAGAGGTAATGTTTTGCTTTGTCCTGTA  898
      |||||||||||| ||||||||||||| |  |||||||||||||| |||||
seq2  ATAATCTACACCTTGAGATTGTCAGAAGGTATGTTTTGCTTTGT-CTGTA  897

seq1  GATTTACTGACCAACATGTGAGTTTTTATGTTGAGTCAGCTACTGCAGTT  948
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GATTTACTGACCAACATGTGAGTTTTTATGTTGAGTCAGCTACTGCAG-T  946

seq1  GCACAATATTTTGTAAAGGATGGTGGCTTTCCCTTGATTTTTGTCCCATC  998
      ||||||||||||||||||||||||||||||||||||| ||||||||||| 
seq2  GCACAATATTTTGTAAAGGATGGTGGCTTTCCCTTGA-TTTTGTCCCAT-  994

seq1  CAGTGAGGTGGACACTTCCTGTGTCATCCTATACTGGAACAAAGATGAAT  1048
      |||||||   ||||||| |||||||||||||| || |||| |||||| ||
seq2  CAGTGAG--TGACACTT-CTGTGTCATCCTAT-CT-GAAC-AAGATG-AT  1037

seq1  TCTAAATTATTTATCTTTG-TGGTCACAAGTATTTACATGGTACACCCAA  1097
      ||| ||||||||||||||| ||||||| |||||||| ||||||||||  |
seq2  TCT-AATTATTTATCTTTGTTGGTCAC-AGTATTTA-ATGGTACACC--A  1082

seq1  CAGCTGTTTCTT  1109
      || |||||||||
seq2  CACCTGTTTCTT  1094