BAC Information

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BAC

Clone NameB6Ng01-080P13
Chromosome17 (Build37)
Map Location 50,779,788 - 50,958,409
singlet/doubletdoublet
Overlap genePlcl2, EG654432, Tbc1d5
Upstream geneKif6, EG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl
Downstream geneLOC100043451, LOC100043452, Satb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080P13.bB6Ng01-080P13.g
ACCDH895956DH895957
length1,1551,074
definitionDH895956|Mus musculus domesticus DNA, BAC clone: B6Ng01-080P13, 5' end.DH895957|Mus musculus domesticus DNA, BAC clone: B6Ng01-080P13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,779,788 - 50,780,951)(50,957,325 - 50,958,409)
sequence
gaattccagggtaggatagggaatgtaaggccaatctgatctacagagtg
gggccttgtctccaaaaaaagcaagatctccaggcatctctagcatgagg
ttgtggccgagagctgcattaatctcttcctcagttctgttcccgcagac
atcctgccactcacttgtgactctattgtgagggggactggagcaaagga
atgggctttttcagggagccagcccctttacaactgcttagtgtgggtgc
agatgtgggtaggcggggtgggcaacatcaaaacttagctatatagtctt
cccacttttcactccaagtatcagattggttctaacatgaatatttcaag
ttttaaataaggctgaatttgcttctgagacctctttaaaatacagagat
ttttacaattgctatgcttttggttcatttgatttttgtttttgtttttg
tttttgagacagggtttccttgtgtaacagccctggctgtcctgtaactc
acttgtagagcaggctggcctcaaactcacagaggtccgcctgcctctgc
ctcccaagtgctgagactaaagtgcgccactatacccagtttaattgctg
tgctttttaaaaagtcactttttccataaatgaattaaagtaaattggaa
ataaaggcatatgtgaaacattttggtattcactgaatgaatattcatat
ttgtgactaatcaacaaactctcaaatccttgccttgggtttttttttct
tcctcttcagtaaagtactgttagcaaaatgatgtttttatttttagccc
tttctaagctagttctccctacagtatccacccaaatgccattttggcat
gacattatcctacagggagtcatacattagattaccagggtgtcgggatg
caaatctgatctccacactatgcaacaaggccatcacccaagtctcctac
cattttgccagcattacagagacccgtcatactccatctgctcctacact
taataaatatgttgaacttctacatgcataaggctcttagtagcctttgc
atacaaaatgtagaaaataagtgagcttagttttatccttttggagtctt
catcatgcaccttacttgaaagttcatggcagaagcctcgttttgaagcg
agcaa
ttaattacaggcaaaagaaaaggcacaattagcattttaatatagaaata
tcttaggctttaggagaattatgataaatctaatgttgcctggcgaacca
aagaggggatattacaacaaactgtctccttaggaatatttgtttaaata
aaagcaacaatacttcatccttatctcttttggataatgatcaccatttc
aggctgttcttagttccagctttaaaatacctttaggtttgttttgttta
ggtttcttttgttttgttttgttttttgtttttgtttttgtttttgtttt
tttttttcgggtttttccagaggaaactgtttgcttggcactaccaggat
aattgtgttgggagagtacctgcttttcagcttgtgcttgttcttgccgt
ggcctctctgactcggatgtggtaaggttatgtcagtcacagcatagtaa
actaactcctctgccatggctggcgctctcccacctgctcccctaaacac
ctgcaacatatgtttgtctaaccctggaatgctttgcctttagggtcctg
gaaaactcccctcgagccttctgcttataaacagctgagcgattcatttt
tttaatgacggttgccttttccctaacgttggagcagtgataagctcact
aaaattaaggtgttgttcatcaaagaaaaacattgcacatagttttgcag
cgctgactccccttccgagccgtattttcccccttcactaacctggctta
ctaataaacatttgaagattggtaacaagatattagaaaaggaaaattga
gtaattcacttgccaagtattttcttcatgccagacacaacttatcttac
aaacataaaattctttatttgttgattattataggaactatttcagtttg
attttttttaaagtcatggccaataaatataaaatggcaatactttggac
atatggtaggcagccactatggttattaaatctcataagttaacaaaata
gtgaatagtatgattttatatcattttaaactataaatatatgttctcta
tcatataaagaatccttttcctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_50779788_50780951
seq2: B6Ng01-080P13.b_48_1202

seq1  GAATTCCAGGGTAGGATAGGGAATGTAAGGCCAATCTGATCTACAGAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGTAGGATAGGGAATGTAAGGCCAATCTGATCTACAGAGTG  50

seq1  GGGCCTTGTCTCCAAAAAAAGCAAGATCTCCAGGCATCTCTAGCATGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTTGTCTCCAAAAAAAGCAAGATCTCCAGGCATCTCTAGCATGAGG  100

seq1  TTGTGGCCGAGAGCTGCATTAATCTCTTCCTCAGTTCTGTTCCCGCAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGCCGAGAGCTGCATTAATCTCTTCCTCAGTTCTGTTCCCGCAGAC  150

seq1  ATCCTGCCACTCACTTGTGACTCTATTGTGAGGGGGACTGGAGCAAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGCCACTCACTTGTGACTCTATTGTGAGGGGGACTGGAGCAAAGGA  200

seq1  ATGGGCTTTTTCAGGGAGCCAGCCCCTTTACAACTGCTTAGTGTGGGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTTTTTCAGGGAGCCAGCCCCTTTACAACTGCTTAGTGTGGGTGC  250

seq1  AGATGTGGGTAGGCGGGGTGGGCAACATCAAAACTTAGCTATATAGTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGGGTAGGCGGGGTGGGCAACATCAAAACTTAGCTATATAGTCTT  300

seq1  CCCACTTTTCACTCCAAGTATCAGATTGGTTCTAACATGAATATTTCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTTTCACTCCAAGTATCAGATTGGTTCTAACATGAATATTTCAAG  350

seq1  TTTTAAATAAGGCTGAATTTGCTTCTGAGACCTCTTTAAAATACAGAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATAAGGCTGAATTTGCTTCTGAGACCTCTTTAAAATACAGAGAT  400

seq1  TTTTACAATTGCTATGCTTTTGGTTCATTTGATTTTTGTTTTTGTTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAATTGCTATGCTTTTGGTTCATTTGATTTTTGTTTTTGTTTTTG  450

seq1  TTTTTGAGACAGGGTTTCCTTGTGTAACAGCCCTGGCTGTCCTGTAACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAGACAGGGTTTCCTTGTGTAACAGCCCTGGCTGTCCTGTAACTC  500

seq1  ACTTGTAGAGCAGGCTGGCCTCAAACTCACAGAGGTCCGCCTGCCTCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTAGAGCAGGCTGGCCTCAAACTCACAGAGGTCCGCCTGCCTCTGC  550

seq1  CTCCCAAGTGCTGAGACTAAAGTGCGCCACTATACCCAGTTTAATTGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAAGTGCTGAGACTAAAGTGCGCCACTATACCCAGTTTAATTGCTG  600

seq1  TGCTTTTTAAAAAGTCACTTTTTCCATAAATGAATTAAAGTAAATTGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTTAAAAAGTCACTTTTTCCATAAATGAATTAAAGTAAATTGGAA  650

seq1  ATAAAGGCATATGTGAAACATTTTGGTATTCACTGAATGAATATTCATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGGCATATGTGAAACATTTTGGTATTCACTGAATGAATATTCATAT  700

seq1  TTGTGACTAATCAACAAACTCTCAAATCCTTGCCTTGGGTTTTTTTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGACTAATCAACAAACTCTCAAATCCTTGCCTTGGGTTTTTTTTTCT  750

seq1  TCCTCTTCAGTAAAGTACTGTTAGCAAAATGATGTTTTTATTTTTAGCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTCAGTAAAGTACTGTTAGCAAAATGATGTTTTTATTTTTAGCCC  800

seq1  TTTCTAAGCTAGTTCTCCCTACAGTATCCACCCAAATGCCATTTTGGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAGCTAGTTCTCCCTACAGTATCCACCCAAATGCCATTTTGGCAT  850

seq1  GACATTATCCTACAGGGAGTCATACATTAGATTACCAGGGTGTCGGGATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTATCCTACAGGGAGTCATACATTAGATTACCAGGGTGTCGGGATG  900

seq1  CAAATCTGATCTCCACACTATGCAACAAGGCCATCACCCAAGTCTCCTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTGATCTCCACACTATGCAACAAGGCCATCACCCAAGTCTCCTAC  950

seq1  CATGTTGCCAGCATTACAGAAGACCCGTCATACTCCATCTGCTCCTACAC  1000
      ||| ||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CATTTTGCCAGCATTACAG-AGACCCGTCATACTCCATCTGCTCCTACAC  999

seq1  TTAATAAATATGTTTTGAACTTCTACATGCATAAGGCTCTTAGTAGCTCT  1050
      ||||||||||||  |||||||||||||||||||||||||||||||||  |
seq2  TTAATAAATATG--TTGAACTTCTACATGCATAAGGCTCTTAGTAGCCTT  1047

seq1  TGCATACCAAAATGTAGAAAATAAGTGAGCCTAGTTTTATCCTTTTGGAG  1100
      |||||| ||||||||||||||||||||||| |||||||||||||||||||
seq2  TGCATA-CAAAATGTAGAAAATAAGTGAGCTTAGTTTTATCCTTTTGGAG  1096

seq1  TCTTCCAATCATGCACACTATCTGAAAATGTTCATGGCCAAGATGCCTCG  1150
      |||||  |||||||||  ||  |||||  |||||||||  ||| ||||||
seq2  TCTTC--ATCATGCACCTTACTTGAAA--GTTCATGGC--AGAAGCCTCG  1140

seq1  --TTGAAGCGACGCAA  1164
        ||||||||| ||||
seq2  TTTTGAAGCGA-GCAA  1155

seq1: chr17_50957325_50958409
seq2: B6Ng01-080P13.g_83_1156 (reverse)

seq1  AGAGGAAAAAGGATGTCTTTATTATTGGATAGGAGAACATATATTTATAA  50
      ||||| |||||||| |||||| |||  |||| |||||||||||||||| |
seq2  AGAGG-AAAAGGAT-TCTTTA-TAT--GATA-GAGAACATATATTTAT-A  43

seq1  GTTTTAAAAATGATATAAAATCATACTATTCACTATTTTGTTAACTTATG  100
      ||||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTT--AAAATGATATAAAATCATACTATTCACTATTTTGTTAACTTATG  91

seq1  AGATTTTAATAACCATAGTGGCTGCCTACCATATGTCCAAAGTATTGCCA  150
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGA-TTTAATAACCATAGTGGCTGCCTACCATATGTCCAAAGTATTGCCA  140

seq1  TTTTATAATTTATTGGCCATGACTTTAAAAAAAAATCAAACTGAAATAGT  200
      |||||| ||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTTAT-ATTTATTGGCCATGACTTT-AAAAAAAATCAAACTGAAATAGT  188

seq1  TCCTATAATAATCAACAAATAAAGAATTTTATGTTTGTAAGATAAGTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATAATAATCAACAAATAAAGAATTTTATGTTTGTAAGATAAGTTGT  238

seq1  GTCTGGCATGAAGAAAATACTTGGCAAGTGAATTACTCAATTTTCCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGCATGAAGAAAATACTTGGCAAGTGAATTACTCAATTTTCCTTTT  288

seq1  CTAATATCTTGTTACCAATCTTC-AATGTTTATTAGTAAGCCAGGTTAGT  349
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTAATATCTTGTTACCAATCTTCAAATGTTTATTAGTAAGCCAGGTTAGT  338

seq1  GAAGGGGGAAAATACGGCTCGGAAGGGGAGTCAGCGCTGCAAAACTATGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGGAAAATACGGCTCGGAAGGGGAGTCAGCGCTGCAAAACTATGT  388

seq1  GCAATGTTTTTCTTTGATGAACAACACCTTAATTTTAGTGAGCTTATCAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTTTTTCTTTGATGAACAACACCTTAATTTTAGTGAGCTTATCAC  438

seq1  TGCTCCAACGTTAGGGAAAAGGCAACCGTCATTAAAAAAATGAATCGCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCAACGTTAGGGAAAAGGCAACCGTCATTAAAAAAATGAATCGCTC  488

seq1  AGCTGTTTATAAGCAGAAGGCTCGAGGGGAGTTTTCCAGGACCCTAAAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTTATAAGCAGAAGGCTCGAGGGGAGTTTTCCAGGACCCTAAAGG  538

seq1  CAAAGCATTCCAGGGTTAGACAAACATATGTTGCAGGTGTTTAGGGGAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCATTCCAGGGTTAGACAAACATATGTTGCAGGTGTTTAGGGGAGC  588

seq1  AGGTGGGAGAGCGCCAGCCATGGCAGAGGAGTTAGTTTACTATGCTGTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGAGAGCGCCAGCCATGGCAGAGGAGTTAGTTTACTATGCTGTGA  638

seq1  CTGACATAACCTTACCACATCCGAGTCAGAGAGGCCACGGCAAGAACAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATAACCTTACCACATCCGAGTCAGAGAGGCCACGGCAAGAACAAG  688

seq1  CACAAGCTGAAAAGCAGGTACTCTCCCAACACAATTATCCTGGTAGTGCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCTGAAAAGCAGGTACTCTCCCAACACAATTATCCTGGTAGTGCC  738

seq1  AAGCAAACAGTTTCCTCTGGAAAAACCCGAAAAAAAAAAACAAAAACAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAACAGTTTCCTCTGGAAAAACCCGAAAAAAAAAAACAAAAACAAA  788

seq1  AACAAAAACAAAAAACAAAACAAAACAAAAGAAACCTAAACAAAACAAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAACAAAAAACAAAACAAAACAAAAGAAACCTAAACAAAACAAAC  838

seq1  CTAAAGGTATTTTAAAGCTGGAACTAAGAACAGCCTGAAATGGTGATCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGTATTTTAAAGCTGGAACTAAGAACAGCCTGAAATGGTGATCAT  888

seq1  TATCCAAAAGAGATAAGGATGAAGTATTGTTGCTTTTATTTAAACAAATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAAAAGAGATAAGGATGAAGTATTGTTGCTTTTATTTAAACAAATA  938

seq1  TTCCTAAGGAGACAGTTTGTTGTAATATCCCCTCTTTGGTTCGCCAGGCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAAGGAGACAGTTTGTTGTAATATCCCCTCTTTGGTTCGCCAGGCA  988

seq1  ACATTAGATTTATCATAATTCTCCTAAAGCCTAAGATATTTCTATATTAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGATTTATCATAATTCTCCTAAAGCCTAAGATATTTCTATATTAA  1038

seq1  AATGCTAATTGTGCCTTTTCTTTTGCCTGTAATTAA  1085
      ||||||||||||||||||||||||||||||||||||
seq2  AATGCTAATTGTGCCTTTTCTTTTGCCTGTAATTAA  1074