BAC Information

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BAC

Clone NameB6Ng01-081P06
Chromosome1 (Build37)17 (Build37)
Map Location 90,157,546 - 90,158,63123,615,140 - 23,616,044
singlet/doubletsingletsinglet
Overlap geneLOC100040766
Upstream geneEfhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1
Downstream gene6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4, LOC383542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-081P06.bB6Ng01-081P06.g
ACCDH896654DH896655
length1,082919
definitionDH896654|Mus musculus domesticus DNA, BAC clone: B6Ng01-081P06, 5' end.DH896655|Mus musculus domesticus DNA, BAC clone: B6Ng01-081P06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(90,157,546 - 90,158,631)(23,615,140 - 23,616,044)
sequence
gaattcagaaagtgtaaaaggtctaagctctctaaccattgtaaaatgta
actctgcataacaccagaaaactaacaaatcacagaggggaggttatttg
tgatctgtataacatgagatggggtggtgtggactcaagaggaaacccaa
ttctaacagaggtgaatagaacagtgagtgccctgagaaccccggtgaag
tcaggatagtcagggcagtatgcccaacctcaaatgaaagcagattgggg
tgtggggctgtcagcgctcaacaagcaagcacgaagcttgggttcatcct
tagtgcctcaaaagcagagaaaaaaaatcaccacaggtgaaggaagacac
accatgtttgtcactgccagcagagagcaccaatgggtgagaagcgtctc
ttacatcgctctactgggtagccatttgtaaaggctattcggcaagttat
actgtattcattctaagagtgtggcagtgttgtgcacatacacatgtcca
caacccatgtgggcccctccagataacaccagtttcctatcactatcaca
aaatactcgaggctggacactcctaatctatataacggtttaacttagtt
ttagaaacccaaggccaactcttgtggtagacgagagatctggtgagggc
ctggtgtcagatatgaggatatgtgggggcagagcaggcaccacttgcaa
acaaacaaacccactcactcactaccaccaccagcaaaaaacgcccaagc
agacaaacagtaaactagagaattgggtgaagtcaggcctgggcttttgt
aaccactctgggaaatcaacctcagcccacaggtgcacgcatctaccagt
gctactacttggggacacaccttcaattattagaagtgctccctggggca
agctctgttcactgttgaagcaacctggcagagtagccatattctttgag
ttaaaagcagagagttatccatttagcggctcctttagcagcgctcgata
ctcgacttcactcttgccaaggcagctcagctcctccactaagggattcg
ggaccctggtgtctcaggagtatggtcaggcc
gaattcccactctgcctcaataaacacacacacacacacacacacacaaa
cacacacacacacacttacctgctgagacatgaagttgtttaggattgta
ttaagtttctcagttgttgcccaattcagtcttgtaagtgccattgtaca
cctggtgaattctttacagatataattaaggagaatatcatgattttata
aactcaaatgaatgagactcatcaattcagattcccagtaacaattgtat
tctgagagtgtaaatattagagacatatttggcaaaatatcagggttcct
gttgatctcatatatggaaaagccaaagccagagcatacttgtgattttc
agtatgagttctgtaaaagtttatagtgtttaaaattagcagcaatttac
agataacatttggagtcaataaaaggacaattctctactgtattgcattg
tctacaccccataaagataaaaaagatatgtgtaatgtggttgacatggc
agagaagctggaagttcattaaaccttgaaatgttcatgaaatatcatct
ctcaaaaatgagatgttaccactattagtaataacatcacttttcaaaaa
acacaaacagatcccttttagtccatatattgcatccttattctaaagag
agagtaaagaactgtactttgtaagttgttaattccagttaatttgtatt
gatcaaaatataaactttcacagtgggacagctatcttagttcaattatt
tgatgcagcatctgtacataaacagggaccaaattgaggaaatttaagaa
agtggctgaatatgcacaggtaagtatgtctccaatatcaatgaccccaa
aacatgcaccataatctactatgagatggaaggaccatcagaaaactcta
tggccatttgccctaaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_90157546_90158631
seq2: B6Ng01-081P06.b_42_1123

seq1  GAATTCAGAAAGTGTAAAAGGTCTAAGCTCTCTAACCATTGTAAAATGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAAGTGTAAAAGGTCTAAGCTCTCTAACCATTGTAAAATGTA  50

seq1  ACTCTGCATAACACCAGAAAACTAACAAATCACAGAGGGGAGGTTATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCATAACACCAGAAAACTAACAAATCACAGAGGGGAGGTTATTTG  100

seq1  TGATCTGTATAACATGAGATGGGGTGGTGTGGACTCAAGAGGAAACCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTGTATAACATGAGATGGGGTGGTGTGGACTCAAGAGGAAACCCAA  150

seq1  TTCTAACAGAGGTGAATAGAACAGTGAGTGCCCTGAGAACCCCGGTGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACAGAGGTGAATAGAACAGTGAGTGCCCTGAGAACCCCGGTGAAG  200

seq1  TCAGGATAGTCAGGGCAGTATGCCCAACCTCAAATGAAAGCAGATTGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATAGTCAGGGCAGTATGCCCAACCTCAAATGAAAGCAGATTGGGG  250

seq1  TGTGGGGCTGTCAGCGCTCAACAAGCAAGCACGAAGCTTGGGTTCATCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGCTGTCAGCGCTCAACAAGCAAGCACGAAGCTTGGGTTCATCCT  300

seq1  TAGTGCCTCAAAAGCAGAGAAAAAAAATCACCACAGGTGAAGGAAGACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCCTCAAAAGCAGAGAAAAAAAATCACCACAGGTGAAGGAAGACAC  350

seq1  ACCATGTTTGTCACTGCCAGCAGAGAGCACCAATGGGTGAGAAGCGTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTTTGTCACTGCCAGCAGAGAGCACCAATGGGTGAGAAGCGTCTC  400

seq1  TTACATCGCTCTACTGGGTAGCCATTTGTAAAGGCTATTCGGCAAGTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCGCTCTACTGGGTAGCCATTTGTAAAGGCTATTCGGCAAGTTAT  450

seq1  ACTGTATTCATTCTAAGAGTGTGGCAGTGTTGTGCACATACACATGTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATTCATTCTAAGAGTGTGGCAGTGTTGTGCACATACACATGTCCA  500

seq1  CAACCCATGTGGGCCCCTCCAGATAACACCAGTTTCCTATCACTATCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCATGTGGGCCCCTCCAGATAACACCAGTTTCCTATCACTATCACA  550

seq1  AAATACTCGAGGCTGGACACTCCTAATCTATATAACGGTTTAACTTAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTCGAGGCTGGACACTCCTAATCTATATAACGGTTTAACTTAGTT  600

seq1  TTAGAAACCCAAGGCCAACTCTTGTGGTAGACGAGAGATCTGGTGAGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAACCCAAGGCCAACTCTTGTGGTAGACGAGAGATCTGGTGAGGGC  650

seq1  CTGGTGTCAGATATGAGGATATGTGGGGGCAGAGCAGGCACCACTTGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTCAGATATGAGGATATGTGGGGGCAGAGCAGGCACCACTTGCAA  700

seq1  ACAAACAAACCCACTCACTCACTACCACCACCAGCAAAAAACGCCCAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACCCACTCACTCACTACCACCACCAGCAAAAAACGCCCAAGC  750

seq1  AGACAAACAGTAAACTAGAGAATTGGGTGAAGTCAGGCCTGGGCTTTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAACAGTAAACTAGAGAATTGGGTGAAGTCAGGCCTGGGCTTTTGT  800

seq1  AACCACTCTGGGAAATCAACCTCAGCCCACAGGTGCACGCATCTACCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTCTGGGAAATCAACCTCAGCCCACAGGTGCACGCATCTACCAGT  850

seq1  GCTACTACCTGGGGACACACCTCCAA-TATAAGAAGTGCTCCCTTGGGGC  899
      |||||||| ||||||||||||| ||| ||| |||||||||||| ||||||
seq2  GCTACTACTTGGGGACACACCTTCAATTATTAGAAGTGCTCCC-TGGGGC  899

seq1  AAGCTCCTGTCAACTG-TGAAGCAAACCTGCAGAGTAGCCAATATTCTTT  948
      ||||| ||||  |||| |||||||| |  ||||||||||| |||||||||
seq2  AAGCT-CTGTTCACTGTTGAAGCAACCTGGCAGAGTAGCC-ATATTCTTT  947

seq1  GAGTTAAAAGCAGAGAAGTTAT-CAGTTAGCGGCTCCTTTAGCAGCGCTC  997
      ||||||||||||||| |||||| || ||||||||||||||||||||||||
seq2  GAGTTAAAAGCAGAG-AGTTATCCATTTAGCGGCTCCTTTAGCAGCGCTC  996

seq1  AGATACTCGACTTCCACCCTTGCCCAGGCCAGCTCAGCCTCCTCCACTAG  1047
       |||||||||||| ||| |||||| ||| |||||||| ||||||||||| 
seq2  -GATACTCGACTT-CACTCTTGCCAAGG-CAGCTCAG-CTCCTCCACTAA  1042

seq1  GGGATTCCGGACCCCTGTGTTCTCAGGA--AGGGTCAGGCC  1086
      ||||||| ||||||  ||| ||||||||  | |||||||||
seq2  GGGATTCGGGACCCTGGTG-TCTCAGGAGTATGGTCAGGCC  1082

seq1: chr17_23615140_23616044
seq2: B6Ng01-081P06.g_72_988

seq1  ATTCCCACTCTGTCTCAATAAACACACACACACAC------------ACA  38
      |||||||||||| ||||||||||||||||||||||            |||
seq2  ATTCCCACTCTGCCTCAATAAACACACACACACACACACACACACAAACA  50

seq1  CAGACACACACACTTACCTGCTGAGACATGAAGTTGTTTAGGATTGTATT  88
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACTTACCTGCTGAGACATGAAGTTGTTTAGGATTGTATT  100

seq1  AAGTTTCACAGTTGTTGCCCAATTCAGTCTTGTAAGTGCCATTGCACACT  138
      ||||||| |||||||||||||||||||||||||||||||||||| |||| 
seq2  AAGTTTCTCAGTTGTTGCCCAATTCAGTCTTGTAAGTGCCATTGTACACC  150

seq1  TGGTGAATTCTTTACACATATAATTAGGGAGAATATCATGATTTTGTAAA  188
      |||||||||||||||| ||||||||| |||||||||||||||||| ||||
seq2  TGGTGAATTCTTTACAGATATAATTAAGGAGAATATCATGATTTTATAAA  200

seq1  CTCAAATGAATGAAACTGTTATATTTGGATTTCCAGTGACAGTTGTAGTT  238
      ||||||||||||| |||  |  |||  |||| ||||| ||| ||||| | 
seq2  CTCAAATGAATGAGACTCATCAATTCAGATTCCCAGTAACAATTGTATTC  250

seq1  TGAGAATTTAAATGTTAGAGACATATTTGGCAAAATATCAGGGTTTCTGT  288
      ||||| | ||||| ||||||||||||||||||||||||||||||| ||||
seq2  TGAGAGTGTAAATATTAGAGACATATTTGGCAAAATATCAGGGTTCCTGT  300

seq1  TGATTTCATATATGGAAAAAGCCAAAGCCAGAGCATACTTGTGGTTTTCA  338
      |||| |||||||||| ||||||||||||||||||||||||||| ||||||
seq2  TGATCTCATATATGG-AAAAGCCAAAGCCAGAGCATACTTGTGATTTTCA  349

seq1  GTATGAGTTCTATAAAAGGTTACAGTGTTTATAATTGACAGCAATTTACA  388
      ||||||||||| |||||| ||| |||||||| ||||  ||||||||||||
seq2  GTATGAGTTCTGTAAAAGTTTATAGTGTTTAAAATTAGCAGCAATTTACA  399

seq1  GATAACATTTTGTAGTCAATAAAAGGACAATTCTCCAGTGGATTTTATTG  438
      ||||||| |||| |||||||||||||||||||||| | || |||  ||||
seq2  GATAACA-TTTGGAGTCAATAAAAGGACAATTCTCTACTGTATTGCATTG  448

seq1  TCCCCACCCCATAAAGATTGAAATGATCTGTGTAATGTGGTTGAGATGAC  488
      ||  ||||||||||||||  ||| ||| |||||||||||||||| ||| |
seq2  TCTACACCCCATAAAGATAAAAAAGATATGTGTAATGTGGTTGACATGGC  498

seq1  AAAGAAGCTGGAAGTTCATTAAACCTTGAAAGGTTCATGAAAGGTCATCT  538
      | ||||||||||||||||||||||||||||| ||||||||||  ||||||
seq2  AGAGAAGCTGGAAGTTCATTAAACCTTGAAATGTTCATGAAATATCATCT  548

seq1  TTCATAAATGAGATGTTACCACTATTAGTAATAACATCACTTTTCAAAAA  588
       ||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAATGAGATGTTACCACTATTAGTAATAACATCACTTTTCAAAAA  598

seq1  ACACAAACAGATCCCTTATAGTCCATATATTGCATCCTTATTCTAAAGAG  638
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACACAAACAGATCCCTTTTAGTCCATATATTGCATCCTTATTCTAAAGAG  648

seq1  AGAAAGTAAAGAACTGGACTTTGTAAGTTGTTAAAGCCAACGCATTTGTA  688
      ||  |||||||||||| |||||||||||||||||  |||    |||||||
seq2  AG--AGTAAAGAACTGTACTTTGTAAGTTGTTAATTCCAGTTAATTTGTA  696

seq1  CAGATCAAAATATAAAC-TTCACAGT-GAACAGCTATCTTAGTTCAATT-  735
        ||||||||||||||| |||||||| | |||||||||||||||||||| 
seq2  TTGATCAAAATATAAACTTTCACAGTGGGACAGCTATCTTAGTTCAATTA  746

seq1  TTTGATGCAGCATCTGTACATAAACAGGGACCACATGGAGGAAATTTAAG  785
      ||||||||||||||||||||||||||||||||| || |||||||||||||
seq2  TTTGATGCAGCATCTGTACATAAACAGGGACCAAATTGAGGAAATTTAAG  796

seq1  AAAGTGGATGAATATGCACAGCTATGTGTGTCTCCAATATTAATGGCCCC  835
      ||||||| ||||||||||||| || || |||||||||||| |||| ||||
seq2  AAAGTGGCTGAATATGCACAGGTAAGTATGTCTCCAATATCAATGACCCC  846

seq1  AAAACATGCACGAGAATCTACACTGAGATGGAAGGACCATCAGAAAACTC  885
      ||||||||||| | |||||||  |||||||||||||||||||||||||||
seq2  AAAACATGCACCATAATCTACTATGAGATGGAAGGACCATCAGAAAACTC  896

seq1  TATGGCCATTTG-CCTAAACA  905
      |||||||||||| ||||||||
seq2  TATGGCCATTTGCCCTAAACA  917