BAC Information

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BAC

Clone NameB6Ng01-082B06
Chromosome17 (Build37)
Map Location 16,723,832 - 16,834,397
singlet/doubletdoublet
Overlap geneLOC100041407
Upstream geneLOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3, LOC100041383, LOC100041394, LOC213781
Downstream geneLOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238, EG626854, LOC100041965, Riok2, Lix1, LOC383297, Lnpep, EG665140, LOC100041519
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082B06.bB6Ng01-082B06.g
ACCDH896740DH896741
length1,0311,139
definitionDH896740|Mus musculus domesticus DNA, BAC clone: B6Ng01-082B06, 5' end.DH896741|Mus musculus domesticus DNA, BAC clone: B6Ng01-082B06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,833,871 - 16,834,397)(16,723,832 - 16,724,985)
sequence
gaattcaaccagctttcaatcttttcttgaggtgtatttagaaatgaaag
aaaagctaggctctgtggcatttgttgcctaacagaatcagaagcatgca
tgtctctacattggtggtggtggcattcacttagtaagaatgaatacggg
atctgctaagggcatcccaaagaaataggcaaaacactgtggtgtttgaa
ggtgtccccaagttaatgggtaagtgaacaggcacatttggtgtctgtgg
cagccatcaaagaggtcacatgactcccggctgacctccaatttcctcag
acagaggctgaggctacaggagcattcctgctttaggagtgcatgttaga
gctatcgtacagctcttcgtgtaattctaatactcttaaaggacatttta
agttagaatataattacatcacttctcccttttctttcctccatctttcc
tcatgtttctccctccaacccttcctttattttacccatattgaaactga
aagcctctttctctttattattgtgacacatatgcaccaatatataaaca
aaatgtactaactccatttttgttgtttgtatgtttgtggtttgggggcc
agactactttgtattggatagccagttaggatgtgcatccctgagagaac
tgattccccctctctcagcagtcattagttgcctacgcatctttgtgtag
ggataggacaccataaacattctccttacatgttagcatgtctattgata
ctgccattgttcaagtcctgcttatgcagacatttctttgggagacagtc
tcacaactaatttcctgatattttggctcttataatctttttcacctccc
ctcctttgatgctccctgagcatggtacaggagctgtgatgtctttatgt
ccattgaggctgggctcctatgatccccactgatctctgcaatgcataac
agttaggcttttctgtaatgctttcatttgctgtaaggagaagcttcatg
atgagaaatgtgatagctgacgtttttagtt
gaattcattttgttgaaaatttaaaaatcaatttcacatgaattgttaca
ttagtttccaaagtttctaataaataattagtatacatttgatactgttg
ctaccctttaaaaggataagttagttaacttgtctgagcacatacctagg
aaggtgatagaagaaataaaattctactttgagtgttaactgtctctttc
tgtttctcttgctagtcatcaaagcaccttctgcgtttatagcttactct
ggaatatttgacagtaaaattcatgggtttaacctcactaacttgatgtt
gtaactatagtactaaatcaagaaacaagcatgattttacattgaagtct
ttttacaaaatataaatggtccttataaatactttcttctgcttccaaac
ttaagtcagaacagaagacttctaaaatagtaacaggaatggaaacctta
ttttgtttctcatttactacttgttagattgcctggaatattctcagaaa
gtcttattttcctaggaactccagagtatcaagtaaattgcagttaagat
attataaagaacatttatatagacaatacaatttctacttaatttgaaat
agattattttaaaagtttcttatcttgtagcttcctgtaacccccgagtg
ctgggtactgatctactgacttcaagcatacaaatatcttgacttgtgta
aatgtcttaaatatagaaccaagcctgttactttttctaatacagcaacc
cttactgagcttttattctatgttagaaataagaacaaatgtgagaacat
gagaatgtgttatgacagcacagtacccagtatttccatgttaacgactt
tccttaaaattatcaatcagctacaaagtgtttctaaaggaactgcaaag
gaaacatccctgcatactcatcaatccttcacaaccacaaactcaacaaa
caccctctagtaacaatcatttaaattaaccaaaacccacacattgatct
gttactctagccaatgtgagtaacaattacaaaaatcactgattcaaact
cttttgccttaattagctaataaacaggagaagagaacatggttatttat
taccctaaattttatggttctttatctttgctccttaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_16833871_16834397
seq2: B6Ng01-082B06.b_45_571 (reverse)

seq1  GTCACAATAATAAAGAGAAAGAGGCTTTCAGTTTCAATATGGGTAAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAATAATAAAGAGAAAGAGGCTTTCAGTTTCAATATGGGTAAAATA  50

seq1  AAGGAAGGGTTGGAGGGAGAAACATGAGGAAAGATGGAGGAAAGAAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGGTTGGAGGGAGAAACATGAGGAAAGATGGAGGAAAGAAAAGG  100

seq1  GAGAAGTGATGTAATTATATTCTAACTTAAAATGTCCTTTAAGAGTATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTGATGTAATTATATTCTAACTTAAAATGTCCTTTAAGAGTATTA  150

seq1  GAATTACACGAAGAGCTGTACGATAGCTCTAACATGCACTCCTAAAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTACACGAAGAGCTGTACGATAGCTCTAACATGCACTCCTAAAGCAG  200

seq1  GAATGCTCCTGTAGCCTCAGCCTCTGTCTGAGGAAATTGGAGGTCAGCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTCCTGTAGCCTCAGCCTCTGTCTGAGGAAATTGGAGGTCAGCCG  250

seq1  GGAGTCATGTGACCTCTTTGATGGCTGCCACAGACACCAAATGTGCCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCATGTGACCTCTTTGATGGCTGCCACAGACACCAAATGTGCCTGT  300

seq1  TCACTTACCCATTAACTTGGGGACACCTTCAAACACCACAGTGTTTTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTACCCATTAACTTGGGGACACCTTCAAACACCACAGTGTTTTGCC  350

seq1  TATTTCTTTGGGATGCCCTTAGCAGATCCCGTATTCATTCTTACTAAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTTGGGATGCCCTTAGCAGATCCCGTATTCATTCTTACTAAGTG  400

seq1  AATGCCACCACCACCAATGTAGAGACATGCATGCTTCTGATTCTGTTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCACCACCACCAATGTAGAGACATGCATGCTTCTGATTCTGTTAGG  450

seq1  CAACAAATGCCACAGAGCCTAGCTTTTCTTTCATTTCTAAATACACCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAATGCCACAGAGCCTAGCTTTTCTTTCATTTCTAAATACACCTCA  500

seq1  AGAAAAGATTGAAAGCTGGTTGAATTC  527
      |||||||||||||||||||||||||||
seq2  AGAAAAGATTGAAAGCTGGTTGAATTC  527

seq1: chr17_16723832_16724985
seq2: B6Ng01-082B06.g_69_1207

seq1  GAATTCATTGTGTTGAAAATTTAAAAATCAATTTCACATGAATTGTTACA  50
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTGTTGAAAATTTAAAAATCAATTTCACATGAATTGTTACA  50

seq1  TTAGTTTCCAAAGTTTCTAATAAATAATTAGTATACATTTGATACTGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTCCAAAGTTTCTAATAAATAATTAGTATACATTTGATACTGTTG  100

seq1  CTACCCTTTAAAAGGATAAGTTAGTTAACTTGTCTGAGCACATACCTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTTTAAAAGGATAAGTTAGTTAACTTGTCTGAGCACATACCTAGG  150

seq1  AAGGTGATAGAAGAAATAAAATTCTACTTTGAGTGTTAACTGTCTCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGATAGAAGAAATAAAATTCTACTTTGAGTGTTAACTGTCTCTTTC  200

seq1  TGTTTCTCTTGCTAGTCATCAAAGCACCTTCTGCGTTTATAGCTTACTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTCTTGCTAGTCATCAAAGCACCTTCTGCGTTTATAGCTTACTCT  250

seq1  GGAATATTTGACAGTAAAATTCATGGGTTTAACCTCACTAACTTGATGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATTTGACAGTAAAATTCATGGGTTTAACCTCACTAACTTGATGTT  300

seq1  GTAACTATAGTACTAAATCAAGAAACAAGCATGATTTTACATTGAAGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTATAGTACTAAATCAAGAAACAAGCATGATTTTACATTGAAGTCT  350

seq1  TTTTACAAAATATAAATGGTCCTTATAAATACTTTCTTCTGCTTCCAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAAAATATAAATGGTCCTTATAAATACTTTCTTCTGCTTCCAAAC  400

seq1  TTAAGTCAGAACAGAAGACTTCTAAAATAGTAACAGGAATGGAAACCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCAGAACAGAAGACTTCTAAAATAGTAACAGGAATGGAAACCTTA  450

seq1  TTTTGTTTCTCATTTACTACTTGTTAGATTGCCTGGAATATTCTCAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTCTCATTTACTACTTGTTAGATTGCCTGGAATATTCTCAGAAA  500

seq1  GTCTTATTTTCCTAGGAACTCCAGAGTATCAAGTAAATTGCAGTTAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATTTTCCTAGGAACTCCAGAGTATCAAGTAAATTGCAGTTAAGAT  550

seq1  ATTATAAAGAACATTTATATAGACAATACAATTTCTACTTAATTTGAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAAGAACATTTATATAGACAATACAATTTCTACTTAATTTGAAAT  600

seq1  AGATTATTTTAAAAGTTTCTTATCTTGTAGCTTCCTGTAACCCCCGAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATTTTAAAAGTTTCTTATCTTGTAGCTTCCTGTAACCCCCGAGTG  650

seq1  CTGGGTACTGATCTACTGACTTCAAGCATACAAATATCTTGACTTGTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTACTGATCTACTGACTTCAAGCATACAAATATCTTGACTTGTGTA  700

seq1  AATGTCTTAAATATAGAACCAAGCCTGTTACTTTTTCTAATACAGCAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTTAAATATAGAACCAAGCCTGTTACTTTTTCTAATACAGCAACC  750

seq1  CTTACTGAGCTTTTATTCTATGTTAGAAATAAGAACAAATGTGAGAACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGAGCTTTTATTCTATGTTAGAAATAAGAACAAATGTGAGAACAT  800

seq1  GAGAATGTGTTATGACAGCACAGTACCCAGTATTTCCATGTTAACGACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGTGTTATGACAGCACAGTACCCAGTATTTCCATGTTAACGACTT  850

seq1  TCC-TAAAATTATCAATCAGCTACAAAGTGTTTCTAAAGGAACTGCAAAG  899
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAAAATTATCAATCAGCTACAAAGTGTTTCTAAAGGAACTGCAAAG  900

seq1  GAAACATCCCTGCATACTCATCAATCCTTCACAACCACAAACTCAAACAA  949
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAAACATCCCTGCATACTCATCAATCCTTCACAACCACAAACTC-AACAA  949

seq1  ACACCCTCTAGTAAACAAATCATTTAAATTAACCAAAACCCACACATTGA  999
      ||||||||||||||   |||||||||||||||||||||||||||||||||
seq2  ACACCCTCTAGTAA--CAATCATTTAAATTAACCAAAACCCACACATTGA  997

seq1  TCTGTTACTCTAGCCAAATGTTGAGTAACACATACAAAAAAATCCAACTG  1049
      ||||||||||||||| |||| |||||||||  |||  |||||||  ||||
seq2  TCTGTTACTCTAGCC-AATG-TGAGTAACAATTAC--AAAAATC--ACTG  1041

seq1  AATCAAAACTC-TTTGCCTTAAATTAGCTAATAAACCAGGAAGAAGAGAA  1098
      | || |||||| |||||||| |||||||||||||| |||| |||||||||
seq2  ATTC-AAACTCTTTTGCCTT-AATTAGCTAATAAA-CAGG-AGAAGAGAA  1087

seq1  CATGGGTAATCAAATAACCCTAACATATTAAAGGGGTCTTTATCTTTGCT  1148
      ||||| || |   || |||||||   |||  | || ||||||||||||||
seq2  CATGGTTATT--TATTACCCTAA---ATTTTATGGTTCTTTATCTTTGCT  1132

seq1  -CTTAAA  1154
       ||||||
seq2  CCTTAAA  1139