BAC Information

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BAC

Clone NameB6Ng01-082D04
Chromosome17 (Build37)
Map Location 45,500,587 - 45,651,308
singlet/doubletdoublet
Overlap geneEG668314, Cdc5l, Spats1, EG668319, Aars2
Upstream geneRunx2, Supt3h, 4930564C03Rik, EG210562
Downstream geneTcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1, Slc29a1, EG653016, Capn11, Tmem63b, Mrpl14, LOC100043363, Vegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082D04.bB6Ng01-082D04.g
ACCDH896827DH896828
length1,056897
definitionDH896827|Mus musculus domesticus DNA, BAC clone: B6Ng01-082D04, 5' end.DH896828|Mus musculus domesticus DNA, BAC clone: B6Ng01-082D04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,650,253 - 45,651,308)(45,500,587 - 45,501,482)
sequence
gaattctctgcacttgtgagaaaactcccattaaatcctagtttcttcaa
aacacaagagctgttcttggaatgtgttttcatgctcctccatgggtagt
ggataggagtgagtttacttcagctgttgctattcatacgcctctataga
aaaaaatgtttttgtcacatgtgggttgtatacctgtgactgtacacccc
ctactcttgtaagaaggtgactcgttttatcaataaattgtctgatgctc
tgaataaagttggttattgcatggggctttagtctgcctcatttttaggt
cccactctcccaggttctcgccaacaaccagagtagtaaacaatgcctag
aatggtcttcccagcactggggaggcagaggcagaggcagaggcaggcag
atctctgagtctgagaccaacctagtatacagagcaaattccaggatggc
cagagttatacagagaggccctgtcttgaaaaaaatgaaatacaaaaacc
aacaaaacaaaaacaaatgaacaacaacaacaaaacaaaaacaactaaaa
aaaccccaaacaaacccaaaccccaaagcaacagaatggccttttggaaa
agccaacggtggcataggactccctggaccttgtggggctagtgctgagt
attaaaaggcccatagtggccatcacctgctcaatttccatggacagagc
atccctgaagcacaccccatctctgctggctgggtctgtgtcaacgtgac
acaagctagcgtcatcttggaaaaagaaatctccactgagaaactgcctc
accgtactgtcctgtgggcaattgcgcctgtgggtgttatttacttgatt
aatgatggatgtgggaggacccagcccactgtgggcagagcaattcccta
ggctgctggtggtggtcctgggtcctattaagaaacaggctgaatgcagg
gcgtggtgatgcacgccttttatcccagcactcgggaggcagaggcaagc
gatttctgagttcgaagccagcctgatttacaagtgagttcagacagcca
gggcta
gaattcagtagtgatcaataaaccagtttgggggacagggaggaccttgt
ttatctatttcatatcataaatccactccaaaactctgtgacttaagaca
aatgagatttttcaatgctcatgatctcccaccagctagagggacttctg
ctgtctctgcctgaagtcatccattaagcccagtggccagaacccaaggc
agaaggagaacccactctggggagatgtgctctggcttcacacgtgttct
gtggtgtgtgaatgcctgctactcatacaaactgactgcacacatgtgtg
catgcacagatatgacaacaacaaaaaagaaatacactcagcaaaagcaa
tttccctaacccaaggcagactgtgatgcagagagtctcttacggggcaa
gaggacaagaagagtgggatggtgtcagagaagccaaggggctggaaaga
cacctgggaacgctaactcatggaagaagagtatggacaactagggtgca
tgctgctgataaatcaatatgttggggtggacataaaggcaaaatgtgcg
ggtgtgtgtgtcagttggtaaaatgcttggcctagaactcaggagcccag
agttcaatccctaacaccatataaactgaggcgcaatgtaaccccaaccc
tgtggtgtcaacaggggaatgagtcgctcaagggcgtcttcattggcaag
tctgaggtcagccttgggatccatgagactgggtcaacaaagaaaggggg
caggcttgggctgtgggggtgcaagcctttaatcctggggtgcaagcttt
taatcctgccctggggaggcagaagcagatgaaccagaagaatcctgtca
cacaaagaaagactgaccagacagactgatgggaaggagaagggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_45650253_45651308
seq2: B6Ng01-082D04.b_46_1101 (reverse)

seq1  TAGCCCTGGCTGTCCTGAAACTCACTTTGTAAACCAGGCTGGCTTCGAAC  50
      ||||||||||||| ||| ||||||| ||||||| ||||||||||||||||
seq2  TAGCCCTGGCTGT-CTG-AACTCAC-TTGTAAATCAGGCTGGCTTCGAAC  47

seq1  TCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGC  100
      |||||||| ||| |||||||||||||||||||||||||| ||||||||||
seq2  TCAGAAAT-CGCTTGCCTCTGCCTCCCGAGTGCTGGGATAAAAGGCGTGC  96

seq1  ATCACCACGCCCTGCATTCAGCCTGTTTCTT-ATAGGACCCAGGACCACC  149
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATCACCACGCCCTGCATTCAGCCTGTTTCTTAATAGGACCCAGGACCACC  146

seq1  ACCAGCAGCCTA-GGAATTGCTCTGCCCACAGTGGGCTGGGTCCTCCCAC  198
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACCAGCAGCCTAGGGAATTGCTCTGCCCACAGTGGGCTGGGTCCTCCCAC  196

seq1  ATCCATCATTAATCAAGTAAATAACA-CCACAGGCGCAATTGCCCACAGG  247
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATCCATCATTAATCAAGTAAATAACACCCACAGGCGCAATTGCCCACAGG  246

seq1  ACAGTACGGTGAGGCAGTTTCTCAGTGGAGATTTCTTTTTCCAAGATGAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTACGGTGAGGCAGTTTCTCAGTGGAGATTTCTTTTTCCAAGATGAC  296

seq1  GCTAGCTTGTGTCACGTTGACACAGACCCAGCCAGCAGAGATGGGGTGTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCTTGTGTCACGTTGACACAGACCCAGCCAGCAGAGATGGGGTGTG  346

seq1  CTTCAGGGATGCTCTGTCCATGGAAATTGAGCAGGTGATGGCCACTATGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGGATGCTCTGTCCATGGAAATTGAGCAGGTGATGGCCACTATGG  396

seq1  GCCTTTTAATACTCAGCACTAGCCCCACAAGGTCCAGGGAGTCCTATGCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTAATACTCAGCACTAGCCCCACAAGGTCCAGGGAGTCCTATGCC  446

seq1  ACCGTTGGCTTTTCCAAAAGGCCATTCTGTTGCTTTGGGGTTTGGGTTTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTTGGCTTTTCCAAAAGGCCATTCTGTTGCTTTGGGGTTTGGGTTTG  496

seq1  TTTGGGGTTTTTTTAGTTGTTTTTGTTTTGTTGTTGTTGTTCATTTGTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGTTTTTTTAGTTGTTTTTGTTTTGTTGTTGTTGTTCATTTGTTT  546

seq1  TTGTTTTGTTGGTTTTTGTATTTCATTTTTTTCAAGACAGGGCCTCTCTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTGGTTTTTGTATTTCATTTTTTTCAAGACAGGGCCTCTCTG  596

seq1  TATAACTCTGGCCATCCTGGAATTTGCTCTGTATACTAGGTTGGTCTCAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTCTGGCCATCCTGGAATTTGCTCTGTATACTAGGTTGGTCTCAG  646

seq1  ACTCAGAGATCTGCCTGCCTCTGCCTCTGCCTCTGCCTCCCCAGTGCTGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAGATCTGCCTGCCTCTGCCTCTGCCTCTGCCTCCCCAGTGCTGG  696

seq1  GAAGACCATTCTAGGCATTGTTTACTACTCTGGTTGTTGGCGAGAACCTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCATTCTAGGCATTGTTTACTACTCTGGTTGTTGGCGAGAACCTG  746

seq1  GGAGAGTGGGACCTAAAAATGAGGCAGACTAAAGCCCCATGCAATAACCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGTGGGACCTAAAAATGAGGCAGACTAAAGCCCCATGCAATAACCA  796

seq1  ACTTTATTCAGAGCATCAGACAATTTATTGATAAAACGAGTCACCTTCTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATTCAGAGCATCAGACAATTTATTGATAAAACGAGTCACCTTCTT  846

seq1  ACAAGAGTAGGGGGTGTACAGTCACAGGTATACAACCCACATGTGACAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGTAGGGGGTGTACAGTCACAGGTATACAACCCACATGTGACAAA  896

seq1  AACATTTTTTTCTATAGAGGCGTATGAATAGCAACAGCTGAAGTAAACTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTTTTCTATAGAGGCGTATGAATAGCAACAGCTGAAGTAAACTC  946

seq1  ACTCCTATCCACTACCCATGGAGGAGCATGAAAACACATTCCAAGAACAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTATCCACTACCCATGGAGGAGCATGAAAACACATTCCAAGAACAG  996

seq1  CTCTTGTGTTTTGAAGAAACTAGGATTT-CTGGGAGTTTTCTCACAAGTG  1046
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  CTCTTGTGTTTTGAAGAAACTAGGATTTAATGGGAGTTTTCTCACAAGTG  1046

seq1  CAGAGAATTC  1056
      ||||||||||
seq2  CAGAGAATTC  1056

seq1: chr17_45500587_45501482
seq2: B6Ng01-082D04.g_70_966

seq1  GAATTCAGTAGTGATCAATAAACCAGTTTGGGGGACAGGGAGGACCTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAGTGATCAATAAACCAGTTTGGGGGACAGGGAGGACCTTGT  50

seq1  TTATCTATTTCATATCATAAATCCACTCCAAAACTCTGTGACTTAAGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTATTTCATATCATAAATCCACTCCAAAACTCTGTGACTTAAGACA  100

seq1  AATGAGATTTTTCAATGCTCATGATCTCCCACCAGCTAGAGGGACTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGATTTTTCAATGCTCATGATCTCCCACCAGCTAGAGGGACTTCTG  150

seq1  CTGTCTCTGCCTGAAGTCATCCATTAAGCCCAGTGGCCAGAACCCAAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTGCCTGAAGTCATCCATTAAGCCCAGTGGCCAGAACCCAAGGC  200

seq1  AGAAGGAGAACCCACTCTGGGGAGATGTGCTCTGGCTTCACACGTGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAGAACCCACTCTGGGGAGATGTGCTCTGGCTTCACACGTGTTCT  250

seq1  GTGGTGTGTGAATGCCTGCTACTCATACAAACTGACTGCACACATGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGTGTGAATGCCTGCTACTCATACAAACTGACTGCACACATGTGTG  300

seq1  CATGCACAGATATGACAACAACAAAAAAGAAATACACTCAGCAAAAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACAGATATGACAACAACAAAAAAGAAATACACTCAGCAAAAGCAA  350

seq1  TTTCCCTAACCCAAGGCAGACTGTGATGCAGAGAGTCTCTTACGGGGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTAACCCAAGGCAGACTGTGATGCAGAGAGTCTCTTACGGGGCAA  400

seq1  GAGGACAAGAAGAGTGGGATGGTGTCAGAGAAGCCAAGGGGCTGGAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAAGAAGAGTGGGATGGTGTCAGAGAAGCCAAGGGGCTGGAAAGA  450

seq1  CACCTGGGAACGCTAACTCATGGAAGAAGAGTATGGACAACTAGGGTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGGAACGCTAACTCATGGAAGAAGAGTATGGACAACTAGGGTGCA  500

seq1  TGCTGCTGATAAATCAATATGTTGGGGTGGACATAAAGGCAAAATGTGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTGATAAATCAATATGTTGGGGTGGACATAAAGGCAAAATGTGCG  550

seq1  GGTGTGTGTGTCAGTTGGTAAAATGCTTGGCCTAGAACTCAGGAGCCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTGTGTCAGTTGGTAAAATGCTTGGCCTAGAACTCAGGAGCCCAG  600

seq1  AGTTCAATCCCTAACACCATATAAACTGAGGCGCAATGTAACCCCAACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAATCCCTAACACCATATAAACTGAGGCGCAATGTAACCCCAACCC  650

seq1  TGTGGTGTCAACAGGGGAATGAGTCGCTCAAGGGCGTCTTCATTGGCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGTCAACAGGGGAATGAGTCGCTCAAGGGCGTCTTCATTGGCAAG  700

seq1  TCTGAGGTCAGCCTT-GGATCCATGAGACTGGGTCAACAAAGAAAGGGGG  749
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCTGAGGTCAGCCTTGGGATCCATGAGACTGGGTCAACAAAGAAAGGGGG  750

seq1  CAGGCTTGGGCTGTGGGGGTGCAAGCCTTTAATCCTGGGGTGCAAGCCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAGGCTTGGGCTGTGGGGGTGCAAGCCTTTAATCCTGGGGTGCAAGCTTT  800

seq1  TAATCCTGCCCTGGGGAGGCAGAAGCAGATGAACCAGAAGAATCCTGTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTGCCCTGGGGAGGCAGAAGCAGATGAACCAGAAGAATCCTGTCA  850

seq1  CACAAAGAAAGACAGA-CAGACAGACAGATGGGAAGGAGGAAGGGAGG  896
      ||||||||||||| || ||||||||| ||||||||||| |||||||||
seq2  CACAAAGAAAGACTGACCAGACAGACTGATGGGAAGGA-GAAGGGAGG  897