BAC Information

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BAC

Clone NameB6Ng01-082I17
Chromosome17 (Build37)
Map Location 46,953,882 - 46,954,068
singlet/doubletsinglet
Overlap geneBC032203
Upstream geneVegfa, Mrps18a, 1700027N10Rik, Mad2l1bp, Gtpbp2, Polh, Xpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1
Downstream geneA330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110, Trerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-082I17.bB6Ng01-082I17.g
ACCDH897068DH897069
length1,282924
definitionDH897068|Mus musculus domesticus DNA, BAC clone: B6Ng01-082I17, 5' end.DH897069|Mus musculus domesticus DNA, BAC clone: B6Ng01-082I17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttaaattattaatctcgatatgcaaagttaaaaatccagaggt
gttaaaattaggccaaacaccccacacttgtctttatattttctgccaat
tataaagactgtcatgttttagaagtgacacaaacccactagtatttagc
atgacactcaagatgctttttaactcttaaaatctgaacttcctttccaa
taacttgaataatatcataaagtgcatccattcattgttacaaatatctc
tctaaatcttccttaatattccattcattactaacattttctgttaaatg
attaataaaaatggctgtcttaagtccttttgttaaacaattacagtggt
ggtagattgtaatgtagtaaaagctgctataacagcaataatcaaaccca
ataatctcttgcttctacttaaagccagactcacttctgccaatatttgt
aagtgtttttcagaataccagtatactatactcatgcaggcaattaaaca
aatgctgtttaacaggcaaccataacaaacatgccaatatcaatatataa
acacaattagaaagtgttcaaccaataaagcttatgttaaatactgtaaa
acaaacaaaaaagtaattgtaatgtgataaattaataaaatattagatgc
cataacacaagcactaacacctgtttgaaatccagattctgttattattc
taaagccagatcctattccaattttatccactgcaaatataactacataa
aaggaagtcttaaacttcaatgtgtctctgaaaatgtcgagaatcatccc
tccaaatactcactgtcatttcattttttcgccaatattggattgaagac
cagtccctgattgagtcagagtaactggtcacattaaaaaaaagaaaagg
tcatgataacaacatctctatctgattaactttccttttcaaatgcagct
tccaccacatccatgttttctgtcacacaagatcgaaaatattgaggctg
atactttgtctagtttgatatggcaagcaaaggtcagtcagaaatggtgt
gccactggagctccctatcatgattgtcagggcatggtcagcatcattct
tgtctcagcatcagcatgtttcatcagttcctctctcgcatccacatgtg
ctagcaatcctggcagtaaactgaaaaagattactgtaatcccacccaaa
agtttccctcccattcatctgatcaggacatgccattacagttatatggg
tcccctccatttctcctaataaataagtagta
gaattctttgaataactctatgccccattatttaatagggttatttgttt
ctctggaattctttttttttttaatatattggatattagccttgtatcaa
atgtagggttggtaaaggtcttttaccacttggttgattgcagttttgtc
ctaattacaattttctttgccttacagaagctatgcaattttatcaggtc
ccattttccaattgctgatcttatgctctagcataaatcattggtgttct
gttcaggaaattttctcctgtgcctatgtgttggaggctttcccccagtt
ggggtctatttgttacagtatatctgcttttctgtgcagatccttgatcc
ccttggatgttagctttgtaaaaagataagagagtagatcaatttgcatt
ctgctatatgctgtcctccagtttaaccagcaccatttttttcaaaatgc
tgtcatttttccattggatggattttccttctttgtgaaatatctggtga
ccttaggtgtgcgggtttatttctgggtctgcaattctattccactgatc
tcccttcctgtctctatgccaataccatgcagttttttttatcacaagtg
ctctgtagtacaagttgaggtcacggttggtgattcccccagaagctctt
ttattgttgagaatagtttttgttatcccgagttctaattctatgaataa
ttgagttggaattttgatagggatttcatggaatgtaaagattgctttcc
atctggacagtggtggcacacacctttaatcccagcactcagaggcagag
gcaggcagatttctgagtcgaggccagcctggtctacaaagtgagttcca
ggacagccagagtgattacaaaaacaaaacaaacaactaacaaaaacaaa
acaaaacatatccgaaacaaacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_46953882_46954068
seq2: B6Ng01-082I17.g_826_990 (reverse)

seq1  TTGTTTGTTTTTTGGTTTTTTGTTGTTGTTTGTTTGTTTGT--TTTGTTT  48
      |||||||  ||| || | | | ||||| | | |||||| ||  |||||||
seq2  TTGTTTG--TTTCGGATATGTTTTGTTTTGTTTTTGTTAGTTGTTTGTTT  48

seq1  TGTTGGTTTTTCAAGACAGTGTTTCTCTGTGTAGCCCTGGCTGTCCTGGA  98
      |||   ||||  ||         || ||        ||||||||||||||
seq2  TGT---TTTTGTAA---------TCACT--------CTGGCTGTCCTGGA  78

seq1  ACTCACTCTGCAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTC  148
      ||||||| || ||||||||||||||||| ||||||||||| |||||||||
seq2  ACTCACTTTGTAGACCAGGCTGGCCTCG-ACTCAGAAATCTGCCTGCCTC  127

seq1  TGCCTCCCAAGTGCTGGGATTAAAGGTGTGCGCCACCAC  187
      ||||| |  ||||||||||||||||||||| ||||||||
seq2  TGCCT-CTGAGTGCTGGGATTAAAGGTGTGTGCCACCAC  165