BAC Information

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BAC

Clone NameB6Ng01-085D09
Chromosome17 (Build37)
Map Location 14,207,918 - 14,313,241
singlet/doubletdoublet
Overlap gene4930488N24Rik
Upstream geneSod2, Gpr31c, Tcp10c, Ttll2, Unc93a, Smok2a, Smok2b, LOC667359, LOC100041352, LOC667372, LOC667384, Smok4a, Tcte2, Mllt4, LOC100041464, EG635895, EG664821, EG664831
Downstream geneDact2, Smoc2, LOC664856, Thbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085D09.bB6Ng01-085D09.g
ACCDH898946DH898947
length1,1251,042
definitionDH898946|Mus musculus domesticus DNA, BAC clone: B6Ng01-085D09, 5' end.DH898947|Mus musculus domesticus DNA, BAC clone: B6Ng01-085D09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,312,039 - 14,313,241)(14,207,918 - 14,208,978)
sequence
gagacctctgcctcctgtaatcaccatacatgtcctcctccccaagacca
ataggtcaacatatccacccaagggccaaggttggttggacttcagcctt
atcctatgaacagggccacatgcctgttccttcccagaccacgtggagac
accataccacagctgctgctgttagccatggcagccagggcccagctctg
aggtcccatctctgttggacctgtgaggagattccaccccgccatctggc
cccatcccagttttgggaaacagatggcactaagctctgtttaaactgag
caacaatcttttctcatctcatgggcagattgtctcctccttctggagtt
ctggggtgcaagattttccataacaaatcccctacgcccccaccctgctg
tatctcactctggctggacaactgggtgggccagagacagcactgattcc
caacctggctcttccaaaaacgaatcccacccacctcgcctgtctggtag
aaacacctagaacaagagtctactcagtcataatcagaaggcaaattgca
ggggggggtgagtagaatatgaattatacgcttcaccagcaggtgggcac
agaaacaagccatcccatccttccccacagcctgttatgaagcccaggag
acagaccttcaagttagcaagcccagaattgttggtatgccgaggccgtt
ggcagagaaaagcagtggcttcggtggctagtctctctttcagacttagg
cgtgagagccacagacctgtgctaacaaaatgggaaggacctcttctact
ttgctttctgttgctgtgataaacattcccaccaaaagcagcttgtgtga
agaaagggttgatttcagcttatacttccaggtaccagcttatctctgag
gaagggaactcaagactagacagctctgtctccagctttgacacccaccg
atgttgcctgtttcatgactaaggaacacgttttctcacacacagagcct
aaccgtgcaaagtcccaaccagagtgacacacccccttttgttgttccaa
cagcagcacgctgtgtgcttgtcatgtgttaacagttgtggtgtaacaca
gtatcatgggaaattgtgtgtatgt
gaattcaagactaccagcccagtgatggcaccacccacaatgtgccttcc
ctgcttcatcaccaattgagaaaatgccttacagctggatctcatggagg
tattttctcatctgaagctcctttctctgtgataactccagcctgtgtca
tgttgacaaaaccagccagtacagttgccttctctgagcatttgatggtc
cctcggctgttggattttgttgctcttgtggggttctatttctcccagtt
tttcctaaccaccaaactcttttgtcttgacattggctcctctggggtgt
acaaagttggctgtagccccctcattgaagttctcagtgaagaccttggt
tttcctgtctctttgaaccttggtttgtcataaccagtgtctatgcctgc
tataaaatccactctaaattccaacttctctttggacttgcacctacttt
gttaaaaaaaaaggtaacttcatttgtgtttttgcaaagacaattttttt
ctgggatgttttattatttgctgacaccaataatcccaacatcacaggct
aatttattcttttctactggatatagtagagtttctaattttttattttt
atatgtttgaacattttgccagcatatatgactgttcctggtgccctctg
atgctggaagagggaatcagatcccccttagattggagttatagatgatc
ttgagttctgtgagaatcaatcttggaccctttagaatagcagtcagggc
tctttactgctgagctagtgttttatccctttgaaaataggaataaattt
agattgtgtgtgtgtgtgtgatttttttaaagtatacacatacatctaag
ttcagaattttaaatagtttttctttaacactgtgtaggcaactggtgac
ttttggaacttgaaactgtatctcacaagatctctattttttttattgaa
aattataatagagaaagtcacattgctttatatacaagaacattgaatgg
accaaaactcaattctagtctttcaatttccttttaaacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_14312039_14313241
seq2: B6Ng01-085D09.b_55_1179 (reverse)

seq1  ACATACACACACACACACACACACACACACACACACACATACACACCACC  50
                                                        
seq2  --------------------------------------------------  0

seq1  ACCACACACATGCACGTAACATACCACACAATATACACACTGATACTGTG  100
                        ||||| |||||||| | | || ||||||||||
seq2  ------------------ACATA-CACACAAT-TTCCCA-TGATACTGTG  29

seq1  TCTACACACAAACTGTTAACACATGACCAGGCACACAGCCGTGCTGCTGT  150
      | |||||   |||||||||||||||| || |||||||| |||||||||||
seq2  T-TACACCACAACTGTTAACACATGA-CAAGCACACAG-CGTGCTGCTGT  76

seq1  TGGGACAACAAAAGGGGGTGTGTCACTCTGGTTGGGACTTTGCACGGTTA  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACAACAAAAGGGGGTGTGTCACTCTGGTTGGGACTTTGCACGGTTA  126

seq1  GGCTCTTGTGTGTGAGAGAACCTTGTTCCCTTAGTCATGAAACAGGCAAC  250
      ||||| ||||||||||| || | |||| ||||||||||||||||||||||
seq2  GGCTC-TGTGTGTGAGA-AAACGTGTT-CCTTAGTCATGAAACAGGCAAC  173

seq1  ATCGGTGGGTGTCAAAGCTGGAGACAGAGCTGTCTAGTCTTGAGTTCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGTGGGTGTCAAAGCTGGAGACAGAGCTGTCTAGTCTTGAGTTCCCT  223

seq1  TCCTCAGAGATAAGCTGGTACCTGGAAGTATAAGCTGAAATCAACCCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGAGATAAGCTGGTACCTGGAAGTATAAGCTGAAATCAACCCTTT  273

seq1  CTTCACACAAGCTGCTTTTGGTGGGAATGTTTTATCACAGCAACAGAAAG  400
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTTCACACAAGCTGCTTTTGGTGGGAATG-TTTATCACAGCAACAGAAAG  322

seq1  CAAAGTAGAAGAGGTCCTTCCCATTTTGTTAGCACAGGTCTGTGGCTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTAGAAGAGGTCCTTCCCATTTTGTTAGCACAGGTCTGTGGCTCTC  372

seq1  ACGCCTAAGTCTGAAAGAGAGACTAGCCACCGAAGCCACTGCTTTTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTAAGTCTGAAAGAGAGACTAGCCACCGAAGCCACTGCTTTTCTCT  422

seq1  GCCAACGGCCTCGGCATACCAACAATTCTGGGCTTGCTAACTTGAAGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACGGCCTCGGCATACCAACAATTCTGGGCTTGCTAACTTGAAGGTC  472

seq1  TGTCTCCTGGGCTTCATAACAGGCTGTGGGGAAGGATGGGATGGCTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCTGGGCTTCATAACAGGCTGTGGGGAAGGATGGGATGGCTTGTT  522

seq1  TCTGTGCCCACCTGCTGGTGAAGCGTATAATTCATATTCTACTCACCCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCCCACCTGCTGGTGAAGCGTATAATTCATATTCTACTCACCCCC  572

seq1  CCCTGCAATTTGCCTTCTGATTATGACTGAGTAGACTCTTGTTCTAGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCAATTTGCCTTCTGATTATGACTGAGTAGACTCTTGTTCTAGGTG  622

seq1  TTTCTACCAGACAGGCGAGGTGGGTGGGATTCGTTTTTGGAAGAGCCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACCAGACAGGCGAGGTGGGTGGGATTCGTTTTTGGAAGAGCCAGG  672

seq1  TTGGGAATCAGTGCTGTCTCTGGCCCACCCAGTTGTCCAGCCAGAGTGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAATCAGTGCTGTCTCTGGCCCACCCAGTTGTCCAGCCAGAGTGAG  722

seq1  ATACAGCAGGGTGGGGGCGTAGGGGATTTGTTATGGAAAATCTTGCACCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCAGGGTGGGGGCGTAGGGGATTTGTTATGGAAAATCTTGCACCC  772

seq1  CAGAACTCCAGAAGGAGGAGACAATCTGCCCATGAGATGAGAAAAGATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTCCAGAAGGAGGAGACAATCTGCCCATGAGATGAGAAAAGATTG  822

seq1  TTGCTCAGTTTAAACAGAGCTTAGTGCCATCTGTTTCCCAAAACTGGGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAGTTTAAACAGAGCTTAGTGCCATCTGTTTCCCAAAACTGGGAT  872

seq1  GGGGCCAGATGGCGGGGTGGAATCTCCTCACAGGTCCAACAGAGATGGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCAGATGGCGGGGTGGAATCTCCTCACAGGTCCAACAGAGATGGGA  922

seq1  CCTCAGAGCTGGGCCCTGGCTGCCATGGCTAACAGCAGCAGCTGTGGTAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAGCTGGGCCCTGGCTGCCATGGCTAACAGCAGCAGCTGTGGTAT  972

seq1  GGTGTCTCCACGTGGTCTGGGAAGGAACAGGCATGTGGCCCTGTTCATAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTCCACGTGGTCTGGGAAGGAACAGGCATGTGGCCCTGTTCATAG  1022

seq1  GATAAGGCTGAAGTCCAACCAACCTTGGCCCTTGGGTGGATATGTTGACC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGGCTGAAGTCCAACCAACCTTGGCCCTTGGGTGGATATGTTGACC  1072

seq1  TATTGGTCTTGGGGAGGAGGACATGTATGGTGATTACAGGAGGCAGAGGT  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGTCTTGGGGAGGAGGACATGTATGGTGATTACAGGAGGCAGAGGT  1122

seq1  CTC  1203
      |||
seq2  CTC  1125

seq1: chr17_14207918_14208978
seq2: B6Ng01-085D09.g_70_1111

seq1  GAATTCAAGACTACCAGCCCAGTGATGGCACCACCCACAATGTGCCTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGACTACCAGCCCAGTGATGGCACCACCCACAATGTGCCTTCC  50

seq1  CTGCTTCATCACCAATTGAGAAAATGCCTTACAGCTGGATCTCATGGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCATCACCAATTGAGAAAATGCCTTACAGCTGGATCTCATGGAGG  100

seq1  TATTTTCTCATCTGAAGCTCCTTTCTCTGTGATAACTCCAGCCTGTGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTCATCTGAAGCTCCTTTCTCTGTGATAACTCCAGCCTGTGTCA  150

seq1  TGTTGACAAAACCAGCCAGTACAGTTGCCTTCTCTGAGCATTTGATGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACAAAACCAGCCAGTACAGTTGCCTTCTCTGAGCATTTGATGGTC  200

seq1  CCTCGGCTGTTGGATTTTGTTGCTCTTGTGGGGTTCTATTTCTCCCAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGGCTGTTGGATTTTGTTGCTCTTGTGGGGTTCTATTTCTCCCAGTT  250

seq1  TTTCCTAACCACCAAACTCTTTTGTCTTGACATTGGCTCCTCTGGGGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTAACCACCAAACTCTTTTGTCTTGACATTGGCTCCTCTGGGGTGT  300

seq1  ACAAAGTTGGCTGTAGCCCCCTCATTGAAGTTCTCAGTGAAGACCTTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTTGGCTGTAGCCCCCTCATTGAAGTTCTCAGTGAAGACCTTGGT  350

seq1  TTTCCTGTCTCTTTGAACCTTGGTTTGTCATAACCAGTGTCTATGCCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGTCTCTTTGAACCTTGGTTTGTCATAACCAGTGTCTATGCCTGC  400

seq1  TATAAAATCCACTCTAAATTCCAACTTCTCTTTGGACTTGCACCTACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATCCACTCTAAATTCCAACTTCTCTTTGGACTTGCACCTACTTT  450

seq1  GTTAAAAAAAAAGGTAACTTCATTTGTGTTTTTGCAAAGACAATTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAAAAAAGGTAACTTCATTTGTGTTTTTGCAAAGACAATTTTTTT  500

seq1  CTGGGATGTTTTATTATTTGCTGACACCAATAATCCCAACATCACAGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATGTTTTATTATTTGCTGACACCAATAATCCCAACATCACAGGCT  550

seq1  AATTTATTCTTTTCTACTGGATATAGTAGAGTTTCTAATTTTTTA-TTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AATTTATTCTTTTCTACTGGATATAGTAGAGTTTCTAATTTTTTATTTTT  600

seq1  ATATGTTTGAACATTTTGCCAGCATATATGACTGTTCCTGGTGCCCTCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTTGAACATTTTGCCAGCATATATGACTGTTCCTGGTGCCCTCTG  650

seq1  ATGCTGGAAGAGGGAATCAGAT-CCCCTTAGATTGGAGTTATAGATGATC  698
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATGCTGGAAGAGGGAATCAGATCCCCCTTAGATTGGAGTTATAGATGATC  700

seq1  TTGAGTTCTGTGAGAATCAATCTTGGACCCTTTAGAAGAGCAGTCAGGGC  748
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTGAGTTCTGTGAGAATCAATCTTGGACCCTTTAGAATAGCAGTCAGGGC  750

seq1  TCTTTACTGCTGAGCTAGTGTTTTATTCCATTGAAAATAAGGAATAAAAT  798
      |||||||||||||||||||||||||| || |||||||| |||||| ||||
seq2  TCTTTACTGCTGAGCTAGTGTTTTATCCCTTTGAAAAT-AGGAAT-AAAT  798

seq1  TTAGATTGTGTGTGTGTGTGTGATTTTTTTAAAGCATACACATACAATCT  848
      |||||||||||||||||||||||||||||||||| |||||||||| ||||
seq2  TTAGATTGTGTGTGTGTGTGTGATTTTTTTAAAGTATACACATAC-ATCT  847

seq1  AAGTTCAGAATTTTAAATAGTTTTTCTATAAACACTGTGTAGGCAAACTG  898
      ||||||||||||||||||||||||||| | |||||||||||||| |||||
seq2  AAGTTCAGAATTTTAAATAGTTTTTCT-TTAACACTGTGTAGGC-AACTG  895

seq1  GTGACTTTATGGAACTTG-AACTGTATCTCACAAGAATCTCTTTTTTTTT  947
      |||||||| ||||||||| |||||||||||||||| |||||| |||||||
seq2  GTGACTTT-TGGAACTTGAAACTGTATCTCACAAG-ATCTCTATTTTTTT  943

seq1  TATTTGATAAATTTTATTAAATAGGAGAAAAGTCACATTTGCTTTTAAAA  997
      || |||| ||||| || ||     ||| ||||||||| |||||||  | |
seq2  TA-TTGA-AAATTATAATA-----GAG-AAAGTCACA-TTGCTTT--ATA  982

seq1  TACAAAGACATTGATAGGAACAAAAACTCAATTCTAGGCCCTTTCACATT  1047
      |||||  ||||||| | | || |||||||||||||||   |||||| |||
seq2  TACAAGAACATTGA-ATGGACCAAAACTCAATTCTAG--TCTTTCA-ATT  1028

seq1  TCCTTTAAAACAGA  1061
      |||||| |||||||
seq2  TCCTTTTAAACAGA  1042