BAC Information

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BAC

Clone NameB6Ng01-085J02
Chromosome17 (Build37)1 (Build37)
Map Location 71,403,652 - 71,403,78930,211,611 - 30,212,791
singlet/doubletsingletsinglet
Overlap geneMyom1
Upstream geneLOC623112, LOC623143, Dlgap1, Tgif1, LOC668724, LOC546695, LOC240156, Mylc2b, 2900073G15Rik
Downstream geneLpin2, Emilin2, LOC100043644, Smchd1, LOC100043879, Ndc80, LOC668740, Spdya, LOC623451, Wdr43, 4632412N22Rik, BC027072, Clip4, Alk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085J02.bB6Ng01-085J02.g
ACCDH899208DH899209
length3361,170
definitionDH899208|Mus musculus domesticus DNA, BAC clone: B6Ng01-085J02, 5' end.DH899209|Mus musculus domesticus DNA, BAC clone: B6Ng01-085J02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(71,403,652 - 71,403,789)(30,211,611 - 30,212,791)
sequence
cacaggaagaccaatagagttaactaacctggactcacaggggctctcag
gaacagaatcaccaactaaagagcatgcatggcctggacctagggcccag
atatattcagcagatgtacagttaggtcttcatatggtacccctaacaac
tgtagtggggctgtctcttaaatctgttgcctgtctgtggatctggttcc
cctaactgggctgccttgtctggcctcactgagaaaggatgtgcctactc
ttacagagagttggtgtgcaatggtgggggcatactggggagagggggag
ttctactctctcagaggaaaagggaaggagaaatgg
gaattccataatgagattagggaaaaagtgctcaaaatcctgggaataat
catactaggtgaatatggatatcaatagcttgggtgtcaccaaaataaat
aagtataggatattacatcaatcaaatgagtaactatatgtatgtttatc
ataatagatacatggaattatttaataaggtttaatatacattcatgaca
caataacctgagaaaccaggaacttgacagaggttgcgaataatatgctc
atagtcgacctcataggaaaagatggaaatatgaaatacaaaagaaaaca
cttaaacctgaattccatgttttctattaatattcagtacagtggtccaa
gtcatagccagaggaataaaggcaggaaaaaaaaaagacaaaatttaaaa
taggttatccaaacaggaaaagaaggtttatagtatctctcattgaaaat
aacatgttctatcatgagcaaaaatcaaaatcctcaatgagcttgtaagt
tcagtaagctttcaatttaaaatcgtatatatatataataaatatataat
aaggtcatagaaatacaacgagctttccagagcaatctgcaaattcattt
ctttcaagaaccagtgaaagccttcacagaaagagaagaagcaggaacaa
aaccccaaaacaacaacaaaacttcaacattaatgtgcttcaaagagtct
tcaaataaatcttcaacaacaacaaaaaaagagcaggctttctcgtcttt
ctgttctgtcatgtctcctaaagtttgtccaaactttcccattacactct
attctgggtgtttaatggcttttctgccctgagttacctagcttcctccc
cattcagctataaaactatcccaaaaggctgagaatcacaggatcaggtt
tatggtgtcagtggcccaacttcttagaaacaaatttcctttttcctgac
actgtgaccaataataggacaaaagcaaggttaagggaaaagaaggttat
atccacaattgagatatatagatcactttagaagaagtttacagcagcaa
acttggtagagcaggtcccattacttacgtagtaggagcagcatgtatac
accaccatctaagccagctgatttatcatttccacatccagatcctgttg
aatcggtctttactgtttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_71403652_71403789
seq2: B6Ng01-085J02.b_229_388 (reverse)

seq1  CCATATTCTCCCCTCCCCTTCTCCTCTGAGAGAGTGG-----GCCCT---  42
      |||| ||||  ||| ||||| |||||||||||||| |      ||||   
seq2  CCAT-TTCT--CCTTCCCTTTTCCTCTGAGAGAGTAGAACTCCCCCTCTC  47

seq1  -CCTGGA--------------CACATCAAGTCTCTGAAGGGCCAGGTATA  77
       || | |              |||| ||| |||||| | |   ||| | |
seq2  CCCAGTATGCCCCCACCATTGCACACCAACTCTCTGTAAGAGTAGGCACA  97

seq1  TCCTCTCCCACTGAGGCCAGACAAGGCAGCCCAGTTAGGGGGA-CAGAT-  125
      |||| || || |||||||||||||||||||||||||||||| | ||||| 
seq2  TCCTTTCTCAGTGAGGCCAGACAAGGCAGCCCAGTTAGGGGAACCAGATC  147

seq1  TTCAGACAGGCAA  138
        |||||||||||
seq2  CACAGACAGGCAA  160

seq1: chr1_30211611_30212791
seq2: B6Ng01-085J02.g_66_1235

seq1  GAATTCCATAATGAGATTAGGGAAAAAGTGCTCAAAATCCTGGGAATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAATGAGATTAGGGAAAAAGTGCTCAAAATCCTGGGAATAAT  50

seq1  CATACTAGGTGAATATGGATATCAATAGCTTGGGTGTCACCAAAATAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTAGGTGAATATGGATATCAATAGCTTGGGTGTCACCAAAATAAAT  100

seq1  AAGTATAGGATATTACATCAATCAAATGAGTAACTATATGTATGTTTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATAGGATATTACATCAATCAAATGAGTAACTATATGTATGTTTATC  150

seq1  ATAATAGATACATGGAATTATTTAATAAGGTTTAATATACATTCATGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGATACATGGAATTATTTAATAAGGTTTAATATACATTCATGACA  200

seq1  CAATAACCTGAGAAACCAGGAACTTGACAGAGGTTGCGAATAATATGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAACCTGAGAAACCAGGAACTTGACAGAGGTTGCGAATAATATGCTC  250

seq1  ATAGTCGACCTCATAGGAAAAGATGGAAATATGAAATACAAAAGAAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCGACCTCATAGGAAAAGATGGAAATATGAAATACAAAAGAAAACA  300

seq1  CTTAAACCTGAATTCCATGTTTTCTATTAATATTCAGTACAGTGGTCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAACCTGAATTCCATGTTTTCTATTAATATTCAGTACAGTGGTCCAA  350

seq1  GTCATAGCCAGAGGAATAAAGGCAGGAAAAAAAAAAGACAAAATTTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAGCCAGAGGAATAAAGGCAGGAAAAAAAAAAGACAAAATTTAAAA  400

seq1  TAGGTTATCCAAACAGGAAAAGAAGGTTTATAGTATCTCTCATTGAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTATCCAAACAGGAAAAGAAGGTTTATAGTATCTCTCATTGAAAAT  450

seq1  AACATGTTCTATCATGAGCAAAAATCAAAATCCTCAATGAGCTTGTAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTTCTATCATGAGCAAAAATCAAAATCCTCAATGAGCTTGTAAGT  500

seq1  TCAGTAAGCTTTCAATTTAAAATCGTATATATATATAATAAATATATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAAGCTTTCAATTTAAAATCGTATATATATATAATAAATATATAAT  550

seq1  AAGGTCATAGAAATACAACGAGCTTTCCAGAGCAATCTGCAAATTCATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCATAGAAATACAACGAGCTTTCCAGAGCAATCTGCAAATTCATTT  600

seq1  CTTTCAAGAACCAGTGAAAGCCTTCACAGAAAGAGAAGAAGCAGGAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAGAACCAGTGAAAGCCTTCACAGAAAGAGAAGAAGCAGGAACAA  650

seq1  AACCCCAAAACAACAACAAAACTTCAACATTAATGTGCTTCAAAGAGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAAAACAACAACAAAACTTCAACATTAATGTGCTTCAAAGAGTCT  700

seq1  TCAAATAAATCTTCAACAACAACAAAAAAAGAGCAGGCTTTCTCGTC-TT  749
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCAAATAAATCTTCAACAACAACAAAAAAAGAGCAGGCTTTCTCGTCTTT  750

seq1  CTGTTCTGTCATGTCTCCTAAAGTTTGTCCAAACTTTCCCATTACACTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTGTCATGTCTCCTAAAGTTTGTCCAAACTTTCCCATTACACTCT  800

seq1  ATTCTGGGTGTTTAATGGCTTTTCTGCCCTGAGTTACCTAGC-TCCTCCC  848
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATTCTGGGTGTTTAATGGCTTTTCTGCCCTGAGTTACCTAGCTTCCTCCC  850

seq1  CATTCCAGCTATAAAACTATCCC-AAAGGCTGAGAATCACAGGATCAGGT  897
      |||| |||||||||||||||||| ||||||||||||||||||||||||||
seq2  CATT-CAGCTATAAAACTATCCCAAAAGGCTGAGAATCACAGGATCAGGT  899

seq1  TTATGGTGTCAGTGGCCCAACTTCTTAG-AACAAATTTCC-TTTTCCTGA  945
      |||||||||||||||||||||||||||| ||||||||||| |||||||||
seq2  TTATGGTGTCAGTGGCCCAACTTCTTAGAAACAAATTTCCTTTTTCCTGA  949

seq1  CACTGTGACCAAATAATAGGACAAAAGCAAGGTTAAGGGAAAAG-AGGTT  994
      |||||||||| ||||||||||||||||||||||||||||||||| |||||
seq2  CACTGTGACC-AATAATAGGACAAAAGCAAGGTTAAGGGAAAAGAAGGTT  998

seq1  ATAT-CACAATTGAAGATATATTAGATCACTTCAG-AGAAGTTTACAGCA  1042
      |||| |||||||| ||||||| |||||||||| || ||||||||||||||
seq2  ATATCCACAATTG-AGATATA-TAGATCACTTTAGAAGAAGTTTACAGCA  1046

seq1  GCAAAAACTTGGTAGAGCAGGTCACATTACTACAGTAGTAAGAAGGCAGC  1092
      ||  ||||||||||||||||||| |||||||   |||||| ||  |||||
seq2  GC--AAACTTGGTAGAGCAGGTCCCATTACTTACGTAGTAGGA--GCAGC  1092

seq1  ATGGAATACA-CACCATCTAGAGCCCAGCTGATTTATACATTTCACACAA  1141
      || | ||||| ||||||||| || ||||||||||||| |||||| ||| |
seq2  AT-GTATACACCACCATCTA-AG-CCAGCTGATTTAT-CATTTC-CAC-A  1136

seq1  TCCAGGATCTCCTGTTGAGATTCTGTCTTTTACTGTTTAT  1181
      |||||    |||||||  || || ||| ||||||||||||
seq2  TCCAG---ATCCTGTT--GAATCGGTC-TTTACTGTTTAT  1170