BAC Information

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BAC

Clone NameB6Ng01-086A05
Chromosome17 (Build37)
Map Location 21,571,669 - 21,691,905
singlet/doubletdoublet
Overlap geneZfp54, Zfp51, Zfp53, LOC100042508, Zfp52
Upstream geneEG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik
Downstream geneBC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086A05.bB6Ng01-086A05.g
ACCDH899524DH899525
length1,133744
definitionDH899524|Mus musculus domesticus DNA, BAC clone: B6Ng01-086A05, 5' end.DH899525|Mus musculus domesticus DNA, BAC clone: B6Ng01-086A05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,571,669 - 21,572,805)(21,691,346 - 21,691,905)
sequence
gaattcatactggagaaaaaccttacaaatgtagtgaatgtgacaaatca
tttacccaggcctcacaacttagaacacatcagagagttcatactggaga
gaaaccttatgtatgtaaggaatgtggcaaatcacttactacatgtgcaa
ttcttagagcacatcagaaaattcatactggagaaaaaccttacaaatgt
atggaatgtgacagatcctatatccaatactcacatcttaaaagacatca
gaaagttcatactggagagaaacataaaattgtaaataatgtgacatagc
attcatccagtattctctctgtgttcaaatcccaacattatacataatag
aaatatatgcatgagagacaggggaaagcctttaataaagttttaaatct
tacaatttatcacaaagtttgtcaaaataaattccaaatgtgattatatg
aaaaccgttttgttttctttttttcttttgtgtgtgtggatgcttatatg
tgtgcactttgctgcttacatctctgtgcactacatgtatgcctggtgcc
tatggaggccagatcccctgaagctggacttaatgacagttgtgagctgt
tatatgtatgttggaaattgaaccctaatacattctaagaacagatgttg
cttttaacctctagatggtgcttttatcctagtccctgggaaaagctgta
ataaaaatatttgtcttgttcagcatccaaaaattcataattttaggcat
ggttgtgcactcagtggtcagagtcaaagatgatctctgttaatcagagg
ctatcctggtatacatagttccaggacagccagacctacatatacctata
accatgagctattatacccagattctttgttcctgaaatagtgactcctt
gacttaattatttataaataaatgcctagaccataagctttggcatgttc
cttgactaattctgaaattatataacctgttcattatattccttatatgc
tgcatggcagtttacctctcctcatcttcatatgtctgtctcctatcgtc
caaggggatctttccaccttgtgactacctccctgtactggctagttctg
tgtcacttgacacagctggggtttcacagagaa
gaattcttttaaagaacaatgtcacaccacaagaaaagacccaagcaata
gaaaaaaacctcgactctggtcaatgacccaaagccaggagaggatggaa
agacatttaaaacttggagagaaaaatcaccattaactatatatactgtt
acatcagaaaaatactctttcaaaactaatggagacatatgtacatttga
ggacagtcatgaattatcacaattcattttactaaaacagcataacctat
aataaattagaggcaaaacatacacagaacaattagagaaattatctatg
agaacataggaaagaatacatttcatgtgaaaaagaggtaagtacaggaa
aactgggaagtaatcatccatgctcaagacggcaaaccactctcacagta
aaaaaagaagaatactatgaataatccggtcaacaacattataaaaaaca
aaatcatagggaataaaaatgcatggccaaaaaacatagccattctggaa
atcaatataatctgcaattaaaaaaatatcctcggggctggtgagatggc
tcagtgggtaagagtacccgactgctcttccaaaggtctggagttcaaat
cccagcaaccacatggtggctcacaaccatctgtaacaagatctgactcc
ctcttctggagtgtctgaagacagctacagtgtacttacataaaaataaa
taaataaatctaaaaaaaaatatcctcaagttaaacaaatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_21571669_21572805
seq2: B6Ng01-086A05.b_47_1179

seq1  GAATTCATACTGGAGAAAAACCTTACAAATGTAGTGAATGTGACAAATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACTGGAGAAAAACCTTACAAATGTAGTGAATGTGACAAATCA  50

seq1  TTTACCCAGGCCTCACAACTTAGAACACATCAGAGAGTTCATACTGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCCAGGCCTCACAACTTAGAACACATCAGAGAGTTCATACTGGAGA  100

seq1  GAAACCTTATGTATGTAAGGAATGTGGCAAATCACTTACTACATGTGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTTATGTATGTAAGGAATGTGGCAAATCACTTACTACATGTGCAA  150

seq1  TTCTTAGAGCACATCAGAAAATTCATACTGGAGAAAAACCTTACAAATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGAGCACATCAGAAAATTCATACTGGAGAAAAACCTTACAAATGT  200

seq1  ATGGAATGTGACAGATCCTATATCCAATACTCACATCTTAAAAGACATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATGTGACAGATCCTATATCCAATACTCACATCTTAAAAGACATCA  250

seq1  GAAAGTTCATACTGGAGAGAAACATAAAATTGTAAATAATGTGACATAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTCATACTGGAGAGAAACATAAAATTGTAAATAATGTGACATAGC  300

seq1  ATTCATCCAGTATTCTCTCTGTGTTCAAATCCCAACATTATACATAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCCAGTATTCTCTCTGTGTTCAAATCCCAACATTATACATAATAG  350

seq1  AAATATATGCATGAGAGACAGGGGAAAGCCTTTAATAAAGTTTTAAATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATGCATGAGAGACAGGGGAAAGCCTTTAATAAAGTTTTAAATCT  400

seq1  TACAATTTATCACAAAGTTTGTCAAAATAAATTCCAAATGTGATTATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTTATCACAAAGTTTGTCAAAATAAATTCCAAATGTGATTATATG  450

seq1  AAAACCGTTTTGTTTTCTTTTTTTCTTTTGTGTGTGTGGATGCTTATATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCGTTTTGTTTTCTTTTTTTCTTTTGTGTGTGTGGATGCTTATATG  500

seq1  TGTGCACTTTGCTGCTTACATCTCTGTGCACTACATGTATGCCTGGTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACTTTGCTGCTTACATCTCTGTGCACTACATGTATGCCTGGTGCC  550

seq1  TATGGAGGCCAGATCCCCTGAAGCTGGACTTAATGACAGTTGTGAGCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGGCCAGATCCCCTGAAGCTGGACTTAATGACAGTTGTGAGCTGT  600

seq1  TATATGTATGTTGGAAATTGAACCCTAATACATTCTAAGAACAGATGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTATGTTGGAAATTGAACCCTAATACATTCTAAGAACAGATGTTG  650

seq1  CTTTTAACCTCTAGATGGTGCTTTTATCCTAGTCCCTGGGAAAAGCTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAACCTCTAGATGGTGCTTTTATCCTAGTCCCTGGGAAAAGCTGTA  700

seq1  ATAAAAATATTTGTCTTGTTCAGCATCCAAAAATTCATAATTTTAGGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATATTTGTCTTGTTCAGCATCCAAAAATTCATAATTTTAGGCAT  750

seq1  GGTTGTGCACTCAGTGGTCAGAGTCAAAGATGATCTCTGTTAATCAGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGCACTCAGTGGTCAGAGTCAAAGATGATCTCTGTTAATCAGAGG  800

seq1  CTATCCTGGTATACATAGTTCCAGGACAGCCAGACCTACATATACCTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTGGTATACATAGTTCCAGGACAGCCAGACCTACATATACCTATA  850

seq1  ACCATGAGCTATTATACCCAGATTCTTTGTTCCTGAAATAGTGACTCCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGAGCTATTATACCCAGATTCTTTGTTCCTGAAATAGTGACTCCTT  900

seq1  GACTTAATTATTTATAAATAAATGCCTAGACCATAAGCTTTGGCATGTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAATTATTTATAAATAAATGCCTAGACCATAAGCTTTGGCATGTTC  950

seq1  CTTGACTAATTCTGAAATTATATAACCTGTTCATTATATTCCTTATATGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTAATTCTGAAATTATATAACCTGTTCATTATATTCCTTATATGC  1000

seq1  TGCATGGCAGTTTACCTCTCCTCATCTTCATATGTCTGTCTCCTTATCGT  1050
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGCATGGCAGTTTACCTCTCCTCATCTTCATATGTCTGTCTCC-TATCGT  1049

seq1  CCAAGGTGGATCTTTCACACC-TGTGACTACCTCCCTGTACTGGCTAGTT  1099
      |||||| ||||||||| |||| ||||||||||||||||||||||||||||
seq2  CCAAGG-GGATCTTTC-CACCTTGTGACTACCTCCCTGTACTGGCTAGTT  1097

seq1  CTGTGTCAACTTGACACAGCTGGGGTTATCACAGAGAA  1137
      ||||||| ||||||||||||||||||| ||||||||||
seq2  CTGTGTC-ACTTGACACAGCTGGGGTT-TCACAGAGAA  1133

seq1: chr17_21691346_21691905
seq2: B6Ng01-086A05.g_69_628 (reverse)

seq1  TACCCACTGAGCCATCTCACCAGCCCCGAGGATATTTTTTTAATTGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCACTGAGCCATCTCACCAGCCCCGAGGATATTTTTTTAATTGCAGA  50

seq1  TTATATTGATTTCCAGAATGGCTATGTTTTTTGGCCATGCATTTTTATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTGATTTCCAGAATGGCTATGTTTTTTGGCCATGCATTTTTATTC  100

seq1  CCTATGATTTTGTTTTTTATAATGTTGTTGACCGGATTATTCATAGTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGATTTTGTTTTTTATAATGTTGTTGACCGGATTATTCATAGTATT  150

seq1  CTTCTTTTTTTACTGTGAGAGTGGTTTGCCGTCTTGAGCATGGATGATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTTTTACTGTGAGAGTGGTTTGCCGTCTTGAGCATGGATGATTA  200

seq1  CTTCCCAGTTTTCCTGTACTTACCTCTTTTTCACATGAAATGTATTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAGTTTTCCTGTACTTACCTCTTTTTCACATGAAATGTATTCTTT  250

seq1  CCTATGTTCTCATAGATAATTTCTCTAATTGTTCTGTGTATGTTTTGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGTTCTCATAGATAATTTCTCTAATTGTTCTGTGTATGTTTTGCCT  300

seq1  CTAATTTATTATAGGTTATGCTGTTTTAGTAAAATGAATTGTGATAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTATTATAGGTTATGCTGTTTTAGTAAAATGAATTGTGATAATTC  350

seq1  ATGACTGTCCTCAAATGTACATATGTCTCCATTAGTTTTGAAAGAGTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGTCCTCAAATGTACATATGTCTCCATTAGTTTTGAAAGAGTATT  400

seq1  TTTCTGATGTAACAGTATATATAGTTAATGGTGATTTTTCTCTCCAAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGATGTAACAGTATATATAGTTAATGGTGATTTTTCTCTCCAAGTT  450

seq1  TTAAATGTCTTTCCATCCTCTCCTGGCTTTGGGTCATTGACCAGAGTCGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGTCTTTCCATCCTCTCCTGGCTTTGGGTCATTGACCAGAGTCGA  500

seq1  GGTTTTTTTCTATTGCTTGGGTCTTTTCTTGTGGTGTGACATTGTTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTTCTATTGCTTGGGTCTTTTCTTGTGGTGTGACATTGTTCTTT  550

seq1  AAAAGAATTC  560
      ||||||||||
seq2  AAAAGAATTC  560