BAC Information

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BAC

Clone NameB6Ng01-086B19
Chromosome17 (Build37)
Map Location 77,241,704 - 77,366,837
singlet/doubletdoublet
Overlap geneEG624348
Upstream geneLOC100043885, LOC100043886
Downstream geneLOC545234, LOC100043887
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086B19.bB6Ng01-086B19.g
ACCDH899599DH899600
length1,151334
definitionDH899599|Mus musculus domesticus DNA, BAC clone: B6Ng01-086B19, 5' end.DH899600|Mus musculus domesticus DNA, BAC clone: B6Ng01-086B19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,365,691 - 77,366,837)(77,241,704 - 77,242,037)
sequence
gaattccaataatgtgataagacttgaatatccaaggattctaatagagt
agaaaggatatcattaagatttttctagctttctgttttatgatgcttca
caaaataactaatataaatatagtattatagtctccaaaatgcttttgat
atgaaaagaatttagcctccagatgcactggccaattaactctgtaaata
aatcatttttaggcctgttattacttcctacatttagttgaggagggtta
agtgcttttaaactaacttgccagatctggaatgagcagctcttcagaag
actgacctgtttatgtaaactggcttcatccctgagcctaataatagagc
gaggatgtgtttttcagcagctaaatctgtccacaatgaaatctaacact
gcctgtcatacatgtggcatcccaacttagcctctcaatgtgagtgatca
gccacaagtgagaaaggaagctttgatactgtatcaatacaaacactggg
ctgtgatccaggagcacttgataattcttccctgagaaatttacataacg
atcacatgggatttgcatgaatggccagtttgctgtaaaaacagtcagtt
gttagtgtaaccccaagatgcaaactagataagaagaaaataattgtata
aatgaaagttttcaacaaagtataaattgctgcctgttgaccgttgactt
acttataggtgaaggctgggaatgatttggagaacagatattaatatact
atttatcgtacagcaaatgacatctgaaaattcaattaaaagacatgaaa
aattgattgcaagtgttaaaaacacaacttaacaggattggggatgtaac
ccagcaataaaaagcactgattgctcctcactgccaaaaccacccctagc
acaaacaaagaagaaattgaaaaattgagaggagccagaaattgcagtaa
aaacataatgaatgagacatatgatgcttgaattctacaagttgaaaagt
aacatattcccctacacactggacactcagtagaaatataatatcttttg
ggagagaatgatctcccacttggtagaggaggagcattcctgtagtatag
tagctatagctttaaatacctatttcagtatgaaaattgaagatatatca
a
atcagaaaatatatttttaaatgaaaaatatatgatattgacttatatgc
tgagaacacagaaacaactccgttttcaattaatattgatatactctcag
aactaattagttaaaactgattatgatatcaataatataaacaattatat
tcaaaatattttatgagacttaaagcatttgtagattttcttaaaaaata
gaacttttcaaaagatggcctagtcagccatcactggaaagagaggccca
ttggacatgtaaactttatatgccccagtacaggggaacaccagggccaa
aaagtgggagtggatgggtaggagagtggggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_77365691_77366837
seq2: B6Ng01-086B19.b_44_1194 (reverse)

seq1  TTGATATA----------------------AGGTATTTAAAAGCCTATAG  28
      ||||||||                      |||||||||||   ||||||
seq2  TTGATATATCTTCAATTTTCATACTGAAATAGGTATTTAAA--GCTATAG  48

seq1  CTACTTAATTACTACAGGAATGGCTCCCTTCCTTCCTTACCAAGTGTGAG  78
      |||||    |||||||||||| |||||  ||||    ||||||||| |||
seq2  CTACT---ATACTACAGGAAT-GCTCC--TCCT---CTACCAAGTGGGAG  89

seq1  ATCATTCTTCTCCCAAAAGATATTTATATTTCTACTGAGTGTCCAGTGTG  128
      ||||||| |||||||||||||| |||||||||||||||||||||||||||
seq2  ATCATTC-TCTCCCAAAAGATA-TTATATTTCTACTGAGTGTCCAGTGTG  137

seq1  TAGGGGAATATGTTTACTTTTTCAACTTGTAGAATTCAAGCATCATTATT  178
      |||||||||||| |||| ||||||||||||||||||||||||||||   |
seq2  TAGGGGAATATG-TTAC-TTTTCAACTTGTAGAATTCAAGCATCAT--AT  183

seq1  GTCTTCATTCATTATGTTTTTACTGCAATTTCTGGCTCCTCTCAATTTTT  228
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTC-TCATTCATTATGTTTTTACTGCAATTTCTGGCTCCTCTCAATTTTT  232

seq1  CAATTTCTTCTTTGTTTGTGCTAGGGGTGGTTTTGGCAGTGAGGAGCAAT  278
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCTTCTTTGTTTGTGCTAGGGGTGGTTTTGGCAGTGAGGAGCAAT  282

seq1  CAGTGCTTTTTATTGCTGGGTTACATCCCCAATCCTGTTAAGTTGTGTTT  328
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTTTTTATTGCTGGGTTACATCCCCAATCCTGTTAAGTTGTGTTT  332

seq1  TTAACACTTGCAATCAATTTTTCATGTCTTTTAATTGAATTTTCAGATGT  378
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACTTGCAATCAATTTTTCATGTCTTTTAATTGAATTTTCAGATGT  382

seq1  CATTTGCTGTACGATAAATAGTATATTAATATCTGTTCTCCAAATCATTC  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCTGTACGATAAATAGTATATTAATATCTGTTCTCCAAATCATTC  432

seq1  CCAGCCTTCACCTATAAGTAAGTCAACGGTCAACAGGCAGCAATTTATAC  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTTCACCTATAAGTAAGTCAACGGTCAACAGGCAGCAATTTATAC  482

seq1  TTTGTTGAAAACTTTCATTTATACAATTATTTTCTTCTTATCTAGTTTGC  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGAAAACTTTCATTTATACAATTATTTTCTTCTTATCTAGTTTGC  532

seq1  ATCTTGGGGTTACACTAACAACTGACTGTTTTTACAGCAAACTGGCCATT  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGGGTTACACTAACAACTGACTGTTTTTACAGCAAACTGGCCATT  582

seq1  CATGCAAATCCCATGTGATCGTTATGTAAATTTCTCAGGGAAGAATTATC  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAAATCCCATGTGATCGTTATGTAAATTTCTCAGGGAAGAATTATC  632

seq1  AAGTGCTCCTGGATCACAGCCCAGTGTTTGTATTGATACAGTATCAAAGC  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTCCTGGATCACAGCCCAGTGTTTGTATTGATACAGTATCAAAGC  682

seq1  TTCCTTTCTCACTTGTGGCTGATCACTCACATTGAGAGGCTAAGTTGGGA  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTCTCACTTGTGGCTGATCACTCACATTGAGAGGCTAAGTTGGGA  732

seq1  TGCCACATGTATGACAGGCAGTGTTAGATTTCATTGTGGACAGATTTAGC  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACATGTATGACAGGCAGTGTTAGATTTCATTGTGGACAGATTTAGC  782

seq1  TGCTGAAAAACACATCCTCGCTCTATTATTAGGCTCAGGGATGAAGCCAG  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAAAAACACATCCTCGCTCTATTATTAGGCTCAGGGATGAAGCCAG  832

seq1  TTTACATAAACAGGTCAGTCTTCTGAAGAGCTGCTCATTCCAGATCTGGC  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATAAACAGGTCAGTCTTCTGAAGAGCTGCTCATTCCAGATCTGGC  882

seq1  AAGTTAGTTTAAAAGCACTTAACCCTCCTCAACTAAATGTAGGAAGTAAT  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGTTTAAAAGCACTTAACCCTCCTCAACTAAATGTAGGAAGTAAT  932

seq1  AACAGGCCTAAAAATGATTTATTTACAGAGTTAATTGGCCAGTGCATCTG  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGCCTAAAAATGATTTATTTACAGAGTTAATTGGCCAGTGCATCTG  982

seq1  GAGGCTAAATTCTTTTCATATCAAAAGCATTTTGGAGACTATAATACTAT  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTAAATTCTTTTCATATCAAAAGCATTTTGGAGACTATAATACTAT  1032

seq1  ATTTATATTAGTTATTTTGTGAAGCATCATAAAACAGAAAGCTAGAAAAA  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATATTAGTTATTTTGTGAAGCATCATAAAACAGAAAGCTAGAAAAA  1082

seq1  TCTTAATGATATCCTTTCTACTCTATTAGAATCCTTGGATATTCAAGTCT  1128
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATGATATCCTTTCTACTCTATTAGAATCCTTGGATATTCAAGTCT  1132

seq1  TATCACATTATTGGAATTC  1147
      |||||||||||||||||||
seq2  TATCACATTATTGGAATTC  1151

seq1: chr17_77241704_77242037
seq2: B6Ng01-086B19.g_73_406

seq1  ATCAGAAAATATATTTTTAAATGAAAAATATATGATATTGACTTATATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAAATATATTTTTAAATGAAAAATATATGATATTGACTTATATGC  50

seq1  TGAGAACACAGAAACAACTCCGTTTTCAATTAATATTGATATACTCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACACAGAAACAACTCCGTTTTCAATTAATATTGATATACTCTCAG  100

seq1  AACTAATTAGTTAAAACTGATTATGATATCAATAATATAAACAATTATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATTAGTTAAAACTGATTATGATATCAATAATATAAACAATTATAT  150

seq1  TCAAAATATTTTATGAGACTTAAAGCATTTGTAGATTTTCTTAAAAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATATTTTATGAGACTTAAAGCATTTGTAGATTTTCTTAAAAAATA  200

seq1  GAACTTTTCAAAAGATGGCCTAGTCAGCCATCACTGGAAAGAGAGGCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTTCAAAAGATGGCCTAGTCAGCCATCACTGGAAAGAGAGGCCCA  250

seq1  TTGGACATGTAAACTTTATATGCCCCAGTACAGGGGAACACCAGGGCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACATGTAAACTTTATATGCCCCAGTACAGGGGAACACCAGGGCCAA  300

seq1  AAAGTGGGAGTGGATGGGTAGGAGAGTGGGGTGG  334
      ||||||||||||||||||||||||||||||||||
seq2  AAAGTGGGAGTGGATGGGTAGGAGAGTGGGGTGG  334