BAC Information

Click to search

BAC

Clone NameB6Ng01-086E22
Chromosome17 (Build37)
Map Location 21,980,016 - 21,980,304
singlet/doubletsinglet
Overlap gene2610036F08Rik
Upstream geneV1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476, 4930515G13Rik
Downstream geneLOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086E22.g
ACCDH899741
length289
definitionDH899741|Mus musculus domesticus DNA, BAC clone: B6Ng01-086E22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tggatttggaccatgtcagcaaggccaggttttaaccccagcactggagt
ggatcgagatctcagttcaaggggagccttatctatggagttccagaact
gccaagactacctagacaaagtgtccccaaaaataaaattaacaaagaaa
aaattatttaaacctagtaatgactacagatttttaaaatgtcttctcca
catttaacactcaagagacttgaggcctcaaggtttccagtggggtgagg
ttgggagtagggatgccatcttggagatggggggggtgg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_21980016_21980304
seq2: B6Ng01-086E22.g_77_365

seq1  TGGACTTGGACCATGTCAGCAAGGCCAGGTTTTAACCCCAGCACTGGAGT  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTGGACCATGTCAGCAAGGCCAGGTTTTAACCCCAGCACTGGAGT  50

seq1  GGATCGAGATCTCAGTTCAAGGGGAGCCTTATCTATGGAGTTCCAGAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCGAGATCTCAGTTCAAGGGGAGCCTTATCTATGGAGTTCCAGAACT  100

seq1  GCCAAGACTACCTAGACAAAGTGTCCCCAAAAATAAAATTAACAAAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGACTACCTAGACAAAGTGTCCCCAAAAATAAAATTAACAAAGAAA  150

seq1  AAATTATTTAAACCTAGTAATGACTACAGATTTTTAAAATGTCTTCTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTTAAACCTAGTAATGACTACAGATTTTTAAAATGTCTTCTCCA  200

seq1  CATTTAACACTCAAGAGACTTGAGGCCTCAAGGTTTCCAGTGGGGTGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAACACTCAAGAGACTTGAGGCCTCAAGGTTTCCAGTGGGGTGAGG  250

seq1  TTGGGAGTAGGGATGCCATCTTGGAGATGGGGGGGGTGG  289
      |||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGTAGGGATGCCATCTTGGAGATGGGGGGGGTGG  289