BAC Information

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BAC

Clone NameB6Ng01-087C04
Chromosome17 (Build37)
Map Location 87,161,521 - 87,369,395
singlet/doubletdoublet
Overlap geneEpas1, 1700090G07Rik, Atp6v1e2, Rhoq
Upstream geneLOC100043903, Srbd1, LOC545228, Prkce
Downstream genePigf, Cript, EG433144, Socs5, Mcfd2, Ttc7, 1700011E24Rik, Calm2, LOC100043727, Tacstd1, Msh2, Kcnk12, LOC626888, LOC668863, EG626920
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087C04.bB6Ng01-087C04.g
ACCDH900347DH900348
length761656
definitionDH900347|Mus musculus domesticus DNA, BAC clone: B6Ng01-087C04, 5' end.DH900348|Mus musculus domesticus DNA, BAC clone: B6Ng01-087C04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,368,635 - 87,369,395)(87,161,521 - 87,162,176)
sequence
gaattcattttaaggcatctgtgcctagcatcctgaggcactgggctagg
ctctgggatgtggtggaggacactcagtgccctgccctcctggagctcat
cgaaggcaagaagcatcccagagacaatggcggtcagtggtcccataccg
ctctctggggcacatgaagagctggggcagctggccacctgccacctgca
ggcttccgcagctgtgacaggcactgaaagaggaagaacactgtgctgag
ggcaaagagagccactccccgacccaaaggggccaaattagggcaaaatc
aaccccctggggtgtgaaaggaaatccagcccagcactgtcttaaatagt
tcaggtttttttttttttttttttaagctgcatttgtaggtttttttgtt
tgtttgggttttttttgcctggtttctctgcctgctgcctttttcctctc
tgaagcaccactgcagtgtttgaggcctctggggtacctgctgctgctaa
cacatgtcctcgctagagacagatactctccttgagagatgctaggctga
aaccccaaacttcaacacaaaaccacaaaagtccagttctccaaaaagat
cctgaccagggcatgacactacaagttcaaagcccagtatttaaaaaggg
gagggggagctggagagtgggttcagtggttatgagcactgactgctcat
ccataaagtcctgagttaagtcccagcaaccacatggttggctcacaaca
tctgttggtgg
gaattccatgtgggaataacaaaattacaccttctagaagctgagaattt
tacttttcaaaacaaggtttaaaaatcaattctcaactgctggttttaaa
gcaccaataaggctattcatgttcataaagtaaaacttgaggttaaatca
taggcattgcctaaatactttttaaagcactacaatgttttatgaaactg
tgacccctcacagtgccttctgagtgaaaacagaaaaacctagtagaata
aatcaaggtctataaaacaagccatgtgggcaattctctgagttccagaa
gccctggtaatgtatttagggtttgttgttgttgttgttgtttgtttgtt
tgtttgtttgttttttaaaatcggtccagtgagtggctttctcagtctgc
tcctgtgagccactgtgccctgtgtttctctctggtgtgtccagcagttc
ccaggtgctattttagaatggcagccttcgctccagcgctggctgaggtt
gatggagctaattttggtgtctagggtaaagggagcgagaaagcctgtgc
aggagtcaaaaaggctttcttgtcccgggttgagagcagcgtggtgttac
cagacacactacatttcacctttagaacctttgttttgtgtacttgcaca
caaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_87368635_87369395
seq2: B6Ng01-087C04.b_40_799 (reverse)

seq1  CACCATACAGATGGTTGTGAGCC-ACCATGTGGTTGCTGGGACTTGAACT  49
      ||||| |||||| |||||||||| ||||||||||||||||||||| ||||
seq2  CACCA-ACAGAT-GTTGTGAGCCAACCATGTGGTTGCTGGGACTT-AACT  47

seq1  CAGGAC-TTCTGGATGAGCAGTCAGTGCTCTTAACCACTGAACCATCTCT  98
      |||||| || |||||||||||||||||||| |||||||||||||  ||||
seq2  CAGGACTTTATGGATGAGCAGTCAGTGCTCATAACCACTGAACCCACTCT  97

seq1  CCAGCTCCCCCTCCCCTTTTTAAATACTGGGCTTTGAACTTGTAGTGTCA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCCCCCTCCCCTTTTTAAATACTGGGCTTTGAACTTGTAGTGTCA  147

seq1  TGCCCTGGTCAGGATCTTTTTGGAGAACTGGACTTTTGTGGTTTTGTGTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGGTCAGGATCTTTTTGGAGAACTGGACTTTTGTGGTTTTGTGTT  197

seq1  GAAGTTTGGGGTTTCAGCCTAGCATCTCTCAAGGAGAGTATCTGTCTCTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTTGGGGTTTCAGCCTAGCATCTCTCAAGGAGAGTATCTGTCTCTA  247

seq1  GCGAGGACATGTGTTAGCAGCAGCAGGTACCCCAGAGGCCTCAAACACTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGGACATGTGTTAGCAGCAGCAGGTACCCCAGAGGCCTCAAACACTG  297

seq1  CAGTGGTGCTTCAGAGAGGAAAAAGGCAGCAGGCAGAGAAACCAGGCAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTGCTTCAGAGAGGAAAAAGGCAGCAGGCAGAGAAACCAGGCAAA  347

seq1  AAAAACCCAAACAAACAAAAAAACCTACAAATGCAGCTTAAAAAAAAAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCCAAACAAACAAAAAAACCTACAAATGCAGCTTAAAAAAAAAAA  397

seq1  AAAAAAAACCTGAACTATTTAAGACAGTGCTGGGCTGGATTTCCTTTCAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACCTGAACTATTTAAGACAGTGCTGGGCTGGATTTCCTTTCAC  447

seq1  ACCCCAGGGGGTTGATTTTGCCCTAATTTGGCCCCTTTGGGTCGGGGAGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGGGGGTTGATTTTGCCCTAATTTGGCCCCTTTGGGTCGGGGAGT  497

seq1  GGCTCTCTTTGCCCTCAGCACAGTGTTCTTCCTCTTTCAGTGCCTGTCAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCTTTGCCCTCAGCACAGTGTTCTTCCTCTTTCAGTGCCTGTCAC  547

seq1  AGCTGCGGAAGCCTGCAGGTGGCAGGTGGCCAGCTGCCCCAGCTCTTCAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCGGAAGCCTGCAGGTGGCAGGTGGCCAGCTGCCCCAGCTCTTCAT  597

seq1  GTGCCCCAGAGAGCGGTATGGGACCACTGACCGCCATTGTCTCTGGGATG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCCAGAGAGCGGTATGGGACCACTGACCGCCATTGTCTCTGGGATG  647

seq1  CTTCTTGCCTTCGATGAGCTCCAGGAGGGCAGGGCACTGAGTGTCCTCCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGCCTTCGATGAGCTCCAGGAGGGCAGGGCACTGAGTGTCCTCCA  697

seq1  CCACATCCCAGAGCCTAGCCCAGTGCCTCAGGATGCTAGGCACAGATGCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATCCCAGAGCCTAGCCCAGTGCCTCAGGATGCTAGGCACAGATGCC  747

seq1  TTAAAATGAATTC  761
      |||||||||||||
seq2  TTAAAATGAATTC  760

seq1: chr17_87161521_87162176
seq2: B6Ng01-087C04.g_69_724

seq1  GAATTCCATGTGGGAATAACAAAATTACACCTTCTAGAAGCTGAGAATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTGGGAATAACAAAATTACACCTTCTAGAAGCTGAGAATTT  50

seq1  TACTTTTCAAAACAAGGTTTAAAAATCAATTCTCAACTGCTGGTTTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTCAAAACAAGGTTTAAAAATCAATTCTCAACTGCTGGTTTTAAA  100

seq1  GCACCAATAAGGCTATTCATGTTCATAAAGTAAAACTTGAGGTTAAATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAATAAGGCTATTCATGTTCATAAAGTAAAACTTGAGGTTAAATCA  150

seq1  TAGGCATTGCCTAAATACTTTTTAAAGCACTACAATGTTTTATGAAACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATTGCCTAAATACTTTTTAAAGCACTACAATGTTTTATGAAACTG  200

seq1  TGACCCCTCACAGTGCCTTCTGAGTGAAAACAGAAAAACCTAGTAGAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCCTCACAGTGCCTTCTGAGTGAAAACAGAAAAACCTAGTAGAATA  250

seq1  AATCAAGGTCTATAAAACAAGCCATGTGGGCAATTCTCTGAGTTCCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAGGTCTATAAAACAAGCCATGTGGGCAATTCTCTGAGTTCCAGAA  300

seq1  GCCCTGGTAATGTATTTAGGGTTTGTTGTTGTTGTTGTTGTTTGTTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGTAATGTATTTAGGGTTTGTTGTTGTTGTTGTTGTTTGTTTGTT  350

seq1  TGTTTGTTTGTTTTTTAAAATCGGTCCAGTGAGTGGCTTTCTCAGTCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTTTTAAAATCGGTCCAGTGAGTGGCTTTCTCAGTCTGC  400

seq1  TCCTGTGAGCCACTGTGCCCTGTGTTTCTCTCTGGTGTGTCCAGCAGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGAGCCACTGTGCCCTGTGTTTCTCTCTGGTGTGTCCAGCAGTTC  450

seq1  CCAGGTGCTATTTTAGAATGGCAGCCTTCGCTCCAGCGCTGGCTGAGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGCTATTTTAGAATGGCAGCCTTCGCTCCAGCGCTGGCTGAGGTT  500

seq1  GATGGAGCTAATTTTGGTGTCTAGGGTAAAGGGAGCGAGAAAGCCTGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGCTAATTTTGGTGTCTAGGGTAAAGGGAGCGAGAAAGCCTGTGC  550

seq1  AGGAGTCAAAAAGGCTTTCTTGTCCCGGGCTGAGAGCAGCGTGGTGTTAC  600
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGGAGTCAAAAAGGCTTTCTTGTCCCGGGTTGAGAGCAGCGTGGTGTTAC  600

seq1  CAGACACACTACATTTCACCTTTAGAACCTTTG-TTTGTGTACTTGCACA  649
      ||||||||||||||||||||||||||||||||| ||||||||||||||| 
seq2  CAGACACACTACATTTCACCTTTAGAACCTTTGTTTTGTGTACTTGCAC-  649

seq1  ACAAATG  656
      |||||||
seq2  ACAAATG  656