BAC Information

Click to search

BAC

Clone NameB6Ng01-087J11
Chromosome17 (Build37)
Map Location 74,932,497 - 75,047,462
singlet/doubletdoublet
Overlap geneBirc6
Upstream geneGalnt14, Ehd3, LOC240160, Xdh, Srd5a2, Memo1, EG668716, 2810410M20Rik, LOC668773, LOC668775, Spast, Slc30a6, Nlrc4, LOC100043883, LOC624159, Yipf4
Downstream geneTtc27, LOC100043672, Ltbp1, EG621988, Rasgrp3, 2810405J04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087J11.bB6Ng01-087J11.g
ACCDH900674DH900675
length1,1101,152
definitionDH900674|Mus musculus domesticus DNA, BAC clone: B6Ng01-087J11, 5' end.DH900675|Mus musculus domesticus DNA, BAC clone: B6Ng01-087J11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,046,348 - 75,047,462)(74,932,497 - 74,933,651)
sequence
gaattcttaaaaagttaagaaagaccagtaatgccacaactgaaatttga
tataaataatatctttacatgtgaagtattcctaccaatgtaatacggac
tacaaatacgttttagctcaaaagcattaaaaatatgtctatacatatat
tattttgtttattatataaagtatatgaatagatgttgatagatatattc
gtttaaacatttgtaagactttctgaagaaaaagtattaattccaattca
caaaatcatgtttgtgattaaattaaaaaaacagtaccaaagtatacctg
tctttagttccaggatcctgagttgtaccaagctggtaaagaatatctat
tgtagaatcagaggacagtccattcagccttccaaaaagtaaagggctat
ttaaatcttagccaaggaaaaaagaaaaacattgttaaattagccagttt
acatggaaagatatattttttaagttattcgctgaatataaaagttatat
tcactgaatatttaaattatgtcacctgtaaaatatgaaaaggtttaaaa
ataacaaagctttaagagaaattcatttcagaaagaattaccaacatcat
gttgttcacgtatgtttactgtgtaggtgtgtaaaaattacaggagcaaa
gtcaagagtcacctgtaggatcgctgcctgatgctgcgcaattcctcagg
agaatgtcaataagcttcaggccaattctagtggactgcaacccaatctt
taccagcacaacctcaatgttgggggaatgcatcccacagtatggagaca
tcagtaaagcagcacaagtctgcagcacgttggcagtaggggcagctgca
ctggccatcatcccttctagatcacttatatgtgtaaggcaatgatgtaa
taaccgtaaccatccaatgctgaaacatacaaaggacaagtatggtaata
taagtagctcaaattattgcagatgctttccgtaaatctcactttactaa
ttcatggttatactcatcaaaattattgtattagactaacagaaaatagt
actatatagcactacagacacttactaagtgatttggggagtggagcgca
cgaggggtgc
gaattcattctgtagaccagggtgactatgacttcccatgacttcccatg
acttcccatgactcccaagtgctgagatcaaaggcgtgcgccaccacacc
cggcttaattttctcttctttgctctttcttagaatgttcctctagttaa
ctaaaattttttaaaaagtttttttttttttaagatttatttattttttt
atttagatgagtatactgaagctgacttcagacacactagaggagggcat
cagatcctattatagatggttgtgagccaccacatggtggctgagaattg
aacccaggtcctctggaagggcaaccagtgcttttaactgctgctgagcc
atctctccagccctgcctaatcttaatcttaactcaagatttgtctggtt
ttgttttgtgttagagtattactctagccctggcttcccaaatgttggga
ttttaaatgtgagctaccataccttacccctactcagattttaagacctg
aacatagcttagcttggagatcctgttagtcagaaaaggtggtgcctcag
ctgtataggaagaattccagcttctgatgtttgcacctctcaagtgctat
taaaccttgctcaggcttgtttttctttcccttcccttcttccttctttg
atacatacagtgtatccttggctgggctgacagtgccctatagatcaggc
tggcttcaaactcctgtctgcctgtctctggctccctagtactgggatca
aaagatggccagcacccgttctcagttttgttttaatttgcagttcttta
atcattcatgatgcttaacctttcatttgctcagttgcctcttttttgta
tttatttgctgagtttgtatcccctacctccttctttcattagggagagc
ccatgaacctgggccttgcccatgctctgcagcacttcaccgttgagctg
tatactccaaaccatgactggattctttttttttttaagatttatttatt
attatacatagtacactgtagctggcttcagacccaccagaagagggcgt
cagatctcatttatggggggtggtgggctacctgtggtcgctgggattga
atctcaggagcagtcagtgctcttaccctcttgacattctcaccagtccg
ga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_75046348_75047462
seq2: B6Ng01-087J11.b_42_1150 (reverse)

seq1  CACCCC---TGCGCTCCACCTCCCCCAAATCACCTTAGTAAGTTGTTCTG  47
      ||||||   ||||||||||   |||||||||| ||||||||||   ||||
seq2  CACCCCTCGTGCGCTCCAC--TCCCCAAATCA-CTTAGTAAGT--GTCTG  45

seq1  TAGGTGCTTATATAGTACCTATTTCTGTTAGGTCTAATACAATAATTTTG  97
      || |||| ||||||||||   ||||||||| |||||||||||||||||||
seq2  TA-GTGC-TATATAGTACTATTTTCTGTTA-GTCTAATACAATAATTTTG  92

seq1  ATGAGTATAACCATGAATTAGTAAAGTTGAGATTTACGGAAAGCATCTGC  147
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATGAGTATAACCATGAATTAGTAAAG-TGAGATTTACGGAAAGCATCTGC  141

seq1  AATAATTTGAGCTACTTATATTACCATACTTGTCCTTTGTATGTTTCAGC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTGAGCTACTTATATTACCATACTTGTCCTTTGTATGTTTCAGC  191

seq1  ATTGGATGGTTACGGTTATTACATCATTGCCTTACACATATAAGTGATCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATGGTTACGGTTATTACATCATTGCCTTACACATATAAGTGATCT  241

seq1  AGAAGGGATGATGGCCAGTGCAGCTGCCCCTACTGCCAACCTGCTGCAGA  297
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGAAGGGATGATGGCCAGTGCAGCTGCCCCTACTGCCAACGTGCTGCAGA  291

seq1  CTTGTGCTGCCTTACTGATGTCTCCATACTGTGGGATGCATTCCCCCAAC  347
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGCTGCTTTACTGATGTCTCCATACTGTGGGATGCATTCCCCCAAC  341

seq1  ATTGAGGTTGTGCTGGTAAAGATTGGGTTGCAGTCCACTAGAATTGGCCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGGTTGTGCTGGTAAAGATTGGGTTGCAGTCCACTAGAATTGGCCT  391

seq1  GAAGCTTATTGACATTCTCCTGAGGAATTGCGCAGCATCAGGCAGCGATC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTATTGACATTCTCCTGAGGAATTGCGCAGCATCAGGCAGCGATC  441

seq1  CTACAGGTGACTCTTGACTTTGCTCCTGTAATTTTTACACACCTACACAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGGTGACTCTTGACTTTGCTCCTGTAATTTTTACACACCTACACAG  491

seq1  TAAACATACGTGAACAACATGATGTTGGTAATTCTTTCTGAAATGAATTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATACGTGAACAACATGATGTTGGTAATTCTTTCTGAAATGAATTT  541

seq1  CTCTTAAAGCTTTGTTATTTTTAAACCTTTTCATATTTTACAGGTGACAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAAAGCTTTGTTATTTTTAAACCTTTTCATATTTTACAGGTGACAT  591

seq1  AATTTAAATATTCAGTGAATATAACTTTTATATTCAGCGAATAACTTAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAATATTCAGTGAATATAACTTTTATATTCAGCGAATAACTTAAA  641

seq1  AAATATATCTTTCCATGTAAACTGGCTAATTTAACAATGTTTTTCTTTTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATCTTTCCATGTAAACTGGCTAATTTAACAATGTTTTTCTTTTT  691

seq1  TCCTTGGCTAAGATTTAAATAGCCCTTTACTTTTTGGAAGGCTGAATGGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGCTAAGATTTAAATAGCCCTTTACTTTTTGGAAGGCTGAATGGA  741

seq1  CTGTCCTCTGATTCTACAATAGATATTCTTTACCAGCTTGGTACAACTCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTCTGATTCTACAATAGATATTCTTTACCAGCTTGGTACAACTCA  791

seq1  GGATCCTGGAACTAAAGACAGGTATACTTTGGTACTGTTTTTTTAATTTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTGGAACTAAAGACAGGTATACTTTGGTACTGTTTTTTTAATTTA  841

seq1  ATCACAAACATGATTTTGTGAATTGGAATTAATACTTTTTCTTCAGAAAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAACATGATTTTGTGAATTGGAATTAATACTTTTTCTTCAGAAAG  891

seq1  TCTTACAAATGTTTAAACGAATATATCTATCAACATCTATTCATATACTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACAAATGTTTAAACGAATATATCTATCAACATCTATTCATATACTT  941

seq1  TATATAATAAACAAAATAATATATGTATAGACATATTTTTAATGCTTTTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATAAACAAAATAATATATGTATAGACATATTTTTAATGCTTTTG  991

seq1  AGCTAAAACGTATTTGTAGTCCGTATTACATTGGTAGGAATACTTCACAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAAACGTATTTGTAGTCCGTATTACATTGGTAGGAATACTTCACAT  1041

seq1  GTAAAGATATTATTTATATCAAATTTCAGTTGTGGCATTACTGGTCTTTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGATATTATTTATATCAAATTTCAGTTGTGGCATTACTGGTCTTTC  1091

seq1  TTAACTTTTTAAGAATTC  1115
      ||||||||||||||||||
seq2  TTAACTTTTTAAGAATTC  1109

seq1: chr17_74932497_74933651
seq2: B6Ng01-087J11.g_69_1220

seq1  GAATTCATTCTGTAGACCAGGGTGACTATGACTTCCCATGACTTCCCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTGTAGACCAGGGTGACTATGACTTCCCATGACTTCCCATG  50

seq1  ACTTCCCATGACTCCCAAGTGCTGAGATCAAAGGCGTGCGCCACCACACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCATGACTCCCAAGTGCTGAGATCAAAGGCGTGCGCCACCACACC  100

seq1  CGGCTTAATTTTCTCTTCTTTGCTCTTTCTTAGAATGTTCCTCTAGTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTTAATTTTCTCTTCTTTGCTCTTTCTTAGAATGTTCCTCTAGTTAA  150

seq1  CTAAAATTTTTTAAAAAGTTTTTTTTTTTTTAAGATTTATTTATTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATTTTTTAAAAAGTTTTTTTTTTTTTAAGATTTATTTATTTTTTT  200

seq1  ATTTAGATGAGTATACTGAAGCTGACTTCAGACACACTAGAGGAGGGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGATGAGTATACTGAAGCTGACTTCAGACACACTAGAGGAGGGCAT  250

seq1  CAGATCCTATTATAGATGGTTGTGAGCCACCACATGGTGGCTGAGAATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCTATTATAGATGGTTGTGAGCCACCACATGGTGGCTGAGAATTG  300

seq1  AACCCAGGTCCTCTGGAAGGGCAACCAGTGCTTTTAACTGCTGCTGAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGGTCCTCTGGAAGGGCAACCAGTGCTTTTAACTGCTGCTGAGCC  350

seq1  ATCTCTCCAGCCCTGCCTAATCTTAATCTTAACTCAAGATTTGTCTGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCCAGCCCTGCCTAATCTTAATCTTAACTCAAGATTTGTCTGGTT  400

seq1  TTGTTTTGTGTTAGAGTATTACTCTAGCCCTGGCTTCCCAAATGTTGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTGTTAGAGTATTACTCTAGCCCTGGCTTCCCAAATGTTGGGA  450

seq1  TTTTAAATGTGAGCTACCATACCTTACCCCTACTCAGATTTTAAGACCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATGTGAGCTACCATACCTTACCCCTACTCAGATTTTAAGACCTG  500

seq1  AACATAGCTTAGCTTGGAGATCCTGTTAGTCAGAAAAGGTGGTGCCTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAGCTTAGCTTGGAGATCCTGTTAGTCAGAAAAGGTGGTGCCTCAG  550

seq1  CTGTATAGGAAGAATTCCAGCTTCTGATGTTTGCACCTCTCAAGTGCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATAGGAAGAATTCCAGCTTCTGATGTTTGCACCTCTCAAGTGCTAT  600

seq1  TAAACCTTGCTCAGGCTTGTTTTTCTTTCCCTTCCCTTCTTCCTTCTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTTGCTCAGGCTTGTTTTTCTTTCCCTTCCCTTCTTCCTTCTTTG  650

seq1  ATACATACAGTGTATCCTTGGCTGGGCTGACAGTGCCCTATAGATCAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACAGTGTATCCTTGGCTGGGCTGACAGTGCCCTATAGATCAGGC  700

seq1  TGGCTTCAAACTCCTGTCTGCCTGTCTCTGGCTCCCTAGTACTGGGATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCAAACTCCTGTCTGCCTGTCTCTGGCTCCCTAGTACTGGGATCA  750

seq1  AAAGATGGCCAGCACCCGTTCTCAGTTTTGTTTTAATTTGCAGTTCTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGGCCAGCACCCGTTCTCAGTTTTGTTTTAATTTGCAGTTCTTTA  800

seq1  ATCATTCATGATGCTTAACCTTTCATTTGCTCAGTTGCCTCTTTTTTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTCATGATGCTTAACCTTTCATTTGCTCAGTTGCCTCTTTTTTGTA  850

seq1  TTTATTTGCTGAGTTTGTATCCCCTACCTCCTTCTTTCATTAGGGAGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTATTTGCTGAGTTTGTATCCCCTACCTCCTTCTTTCATTAGGGAG-AG  899

seq1  CCCATGAACCTGGGCCTTGCCCATGCTCTGCAAGCACTTCACCGTTGAGC  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCCATGAACCTGGGCCTTGCCCATGCTCTGC-AGCACTTCACCGTTGAGC  948

seq1  TGTATACTCCAAACCATGACTGGATTCTTTTTTTTTTTAAAGATTTATTT  1000
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGTATACTCCAAACCATGACTGGATTCTTTTTTTTTTT-AAGATTTATTT  997

seq1  ATTATTATACATAAGTACACTGTAGCTGGCTTCAGACACACCAGAAGAGG  1050
      |||||||||||| |||||||||||||||||||||||| ||||||||||||
seq2  ATTATTATACAT-AGTACACTGTAGCTGGCTTCAGACCCACCAGAAGAGG  1046

seq1  GCGTCAGATCTCA-TTATGGGTGGTTGTGAGCCACCTGTGGTCGCTGGGA  1099
      ||||||||||||| ||||||| ||| ||| || |||||||||||||||||
seq2  GCGTCAGATCTCATTTATGGGGGGTGGTGGGCTACCTGTGGTCGCTGGGA  1096

seq1  TTTGAACTCAAGAGCAGTCAGTGCTCTTACCCTCTGAGCCATCTCACCAG  1149
      ||  | |||| ||||||||||||||||||||||||   |  |||||||||
seq2  TTGAATCTCAGGAGCAGTCAGTGCTCTTACCCTCTTGACATTCTCACCAG  1146

seq1  TCCGGA  1155
      ||||||
seq2  TCCGGA  1152