BAC Information

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BAC

Clone NameB6Ng01-088B02
Chromosome17 (Build37)
Map Location 59,199,886 - 59,312,535
singlet/doubletdoublet
Overlap genenone
Upstream geneCntnap5c, LOC620408, EG545216, LOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik
Downstream geneLOC100043537, LOC100043542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088B02.bB6Ng01-088B02.g
ACCDH901026DH901027
length1,1151,089
definitionDH901026|Mus musculus domesticus DNA, BAC clone: B6Ng01-088B02, 5' end.DH901027|Mus musculus domesticus DNA, BAC clone: B6Ng01-088B02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,311,410 - 59,312,535)(59,199,886 - 59,200,981)
sequence
gaattcattctgactctcgtcagattcctcttctcaatccaaatatttac
aaattgattcacttgtcatatgcaatggaaacagacataggaatggacca
tgaaaacagaaaatgcagaacatctccatgcagtctactggacatatgca
gtaagtgttgtcagggtgactaagaaagagtcatttgagacctgatccaa
cagagaacaaggtcgaaaagaaagaaagaaagaaagaggtcaaatcttca
gtaaaatagacgagagctgaggaacaccgacctgtggctcttccatgatt
aagtggtttactgtcattaaccagctgaccttaggaggccatagagaaat
caattaagccatttggcctgaccccaaggaaatatggataaattctctga
aaatcagttgcatgaagattattgcttagtgcataattggtttaaaacct
cacccccccaaaagaggtctcttttgcactatcatgataattgtgaggta
aaggttgatggcctcatgtcaacatcaggggggaaaaatgtggttttgac
agataatatgtcagttttcctctaacattgatgaacaataaccatcgggt
gacatcaaaccgtgcataaatgattagctaattacatcatcatggtcacg
tgacatatcactaatcataattcactttccaaatgagaattctaaaagct
aaactaagatgattgcaatttatgcaatgtcacaaaactcacaaatgctg
tgaggacaggatgtgaacacattcacacctaagaaagtatctcagcgatg
tactgataaatgtacagatggaatgcaaatgcatatgttaacttcaggag
atgagtgtcccagagatattaatctcaaaatatcaaggagggaaacgtaa
atttcagcaagacaaatagaaacaaagagcatttttctttttgcatatta
aaaatgtatttcccaagtaagacacggtaaatatcaaggctaatatgctc
tctagcacacagttcacaaatgtggtgggggaaaaaaaagagagacttat
gatttgaaatgtcactacttttggcactgaatactatccactgtctagat
gggctagaattactt
gaattctgccctcgacctatgccccacacttcctgatcctatgtccatct
atgttattcccaagactgtgtatcaccagaaatttcattgagttggatct
ggaatcacctaacagatgcatctctgaatgggtcttggaaggtaattaca
gaatgggtgtactaaggggattagacattttgccaaagtttgtagaccat
tcagtggcaacctatgtatgaataactccaagggaaagataatcagatca
gtgcttcttgcttgcctggtctcacagtttgctggtgagtgcatgcaccc
tattattgatgccacccttcccaggccactcattagcttcttggctttcc
actgtaggatgggcagagattcttgagaaagtctcaagccttcttgcttg
actgaaactcctgagacacccagcttcatggactacagagacaagattat
cagtctgtctatcatggcagctgttgcttgactacatagccctgattatg
caagccaagtgaataagatcatatattaatacatacataataatatatca
tatataatcatctatgtgatctgtaggtatataagcatatatatgtatat
atattatagttctgttcttctagaacactgtcaaaatactgaatttaaag
agcagttattagtattatcttcctgtttaaaaaaactacctaagttaaat
aaaaccattaagaaatattatagtacaaatctaagacacctaaaatgggt
ctcacaagcccaggaaacaggtacaatcagggatgagctgctttttttta
atagataatgtgtttccctagatgtctcagcatctatacccatctgtttg
ctgtggcttgtgacccccattccttcttcaaagccagcagtgtggcatct
taccaagatttctctttgggctttcccttggctttctgatccttgtgatc
tccattgaaagattcaggcagatacacagaacatacatagagtagactta
tatgtaagagaaagtggatgtcataaagggataggagtgggagagcgtca
agagttcattggtggagaaaaataatcccacagattcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_59311410_59312535
seq2: B6Ng01-088B02.b_43_1157 (reverse)

seq1  AAGTAAATCCTAGCCCATCTAGACAGTGGATTAGTATTCAGTGCAAAAAG  50
      |||| ||| ||||||||||||||||||||| ||||||||||||| |||||
seq2  AAGT-AATTCTAGCCCATCTAGACAGTGGA-TAGTATTCAGTGCCAAAAG  48

seq1  TAAGTGAACAATTTCAAATTCAT-AGTCTCTCTTTTTTTTTCCCCCACCA  99
      | |||||   |||||||| |||| |||||||| |||||||||||||||| 
seq2  T-AGTGA--CATTTCAAA-TCATAAGTCTCTC-TTTTTTTTCCCCCACC-  92

seq1  ACATTTTGTTGAACTGTTGTGCTAGAGAGCAATATTAGCCTTGATATTTA  149
      ||||||   ||||||| ||||||||||||| |||||||||||||||||||
seq2  ACATTT--GTGAACTG-TGTGCTAGAGAGC-ATATTAGCCTTGATATTTA  138

seq1  CCGTGTCTTACTTGGGAAATACATTTTTAATATGCAAAAAGAAAAATGCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTCTTACTTGGGAAATACATTTTTAATATGCAAAAAGAAAAATGCT  188

seq1  CTTTGTTTCTATTTGTCTTGCTGAAATTTACGTTTCCCTCCTTGATATTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTCTATTTGTCTTGCTGAAATTTACGTTTCCCTCCTTGATATTT  238

seq1  TGAGATTAATATCTCTGGGACACTCATCTCCTGAAGTTAACATATGCATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTAATATCTCTGGGACACTCATCTCCTGAAGTTAACATATGCATT  288

seq1  TGCATTCCATCTGTACATTTATCAGTACATCGCTGAGATACTTTCTTAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCCATCTGTACATTTATCAGTACATCGCTGAGATACTTTCTTAGG  338

seq1  TGTGAATGTGTTCACATCCTGTCCTCACAGCATTTGTGAGTTTTGTGACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATGTGTTCACATCCTGTCCTCACAGCATTTGTGAGTTTTGTGACA  388

seq1  TTGCATAAATTGCAATCATCTTAGTTTAGCTTTTAGAATTCTCATTTGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATAAATTGCAATCATCTTAGTTTAGCTTTTAGAATTCTCATTTGGA  438

seq1  AAGTGAATTATGATTAGTGATATGTCACGTGACCATGATGATGTAATTAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAATTATGATTAGTGATATGTCACGTGACCATGATGATGTAATTAG  488

seq1  CTAATCATTTATGCACGGTTTGATGTCACCCGATGGTTATTGTTCATCAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCATTTATGCACGGTTTGATGTCACCCGATGGTTATTGTTCATCAA  538

seq1  TGTTAGAGGAAAACTGACATATTATCTGTCAAAACCACATTTTTCCCCCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGAGGAAAACTGACATATTATCTGTCAAAACCACATTTTTCCCCCC  588

seq1  TGATGTTGACATGAGGCCATCAACCTTTACCTCACAATTATCATGATAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTGACATGAGGCCATCAACCTTTACCTCACAATTATCATGATAGT  638

seq1  GCAAAAGAGACCTCTTTTGGGGGGGTGAGGTTTTAAACCAATTATGCACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGAGACCTCTTTTGGGGGGGTGAGGTTTTAAACCAATTATGCACT  688

seq1  AAGCAATAATCTTCATGCAACTGATTTTCAGAGAATTTATCCATATTTCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATAATCTTCATGCAACTGATTTTCAGAGAATTTATCCATATTTCC  738

seq1  TTGGGGTCAGGCCAAATGGCTTAATTGATTTCTCTATGGCCTCCTAAGGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTCAGGCCAAATGGCTTAATTGATTTCTCTATGGCCTCCTAAGGT  788

seq1  CAGCTGGTTAATGACAGTAAACCACTTAATCATGGAAGAGCCACAGGTCG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGTTAATGACAGTAAACCACTTAATCATGGAAGAGCCACAGGTCG  838

seq1  GTGTTCCTCAGCTCTCGTCTATTTTACTGAAGATTTGACCTCTTTCTTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCTCAGCTCTCGTCTATTTTACTGAAGATTTGACCTCTTTCTTTC  888

seq1  TTTCTTTCTTTTCGACCTTGTTCTCTGTTGGATCAGGTCTCAAATGACTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTTCGACCTTGTTCTCTGTTGGATCAGGTCTCAAATGACTC  938

seq1  TTTCTTAGTCACCCTGACAACACTTACTGCATATGTCCAGTAGACTGCAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAGTCACCCTGACAACACTTACTGCATATGTCCAGTAGACTGCAT  988

seq1  GGAGATGTTCTGCATTTTCTGTTTTCATGGTCCATTCCTATGTCTGTTTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGTTCTGCATTTTCTGTTTTCATGGTCCATTCCTATGTCTGTTTC  1038

seq1  CATTGCATATGACAAGTGAATCAATTTGTAAATATTTGGATTGAGAAGAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCATATGACAAGTGAATCAATTTGTAAATATTTGGATTGAGAAGAG  1088

seq1  GAATCTGACGAGAGTCAGAATGAATTC  1126
      |||||||||||||||||||||||||||
seq2  GAATCTGACGAGAGTCAGAATGAATTC  1115

seq1: chr17_59199886_59200981
seq2: B6Ng01-088B02.g_69_1157

seq1  GAATTCTGCCCTCGACCTATGCCCCACACTTCCTGATCCTATGTCCATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCCTCGACCTATGCCCCACACTTCCTGATCCTATGTCCATCT  50

seq1  ATGTTATTCCCAAGACTGTGTATCACCAGAAATTTCATTGAGTTGGATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATTCCCAAGACTGTGTATCACCAGAAATTTCATTGAGTTGGATCT  100

seq1  GGAATCACCTAACAGATGCATCTCTGAATGGGTCTTGGAAGGTAATTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCACCTAACAGATGCATCTCTGAATGGGTCTTGGAAGGTAATTACA  150

seq1  GAATGGGTGTACTAAGGGGATTAGACATTTTGCCAAAGTTTGTAGACCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGGTGTACTAAGGGGATTAGACATTTTGCCAAAGTTTGTAGACCAT  200

seq1  TCAGTGGCAACCTATGTATGAATAACTCCAAGGGAAAGATAATCAGATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGCAACCTATGTATGAATAACTCCAAGGGAAAGATAATCAGATCA  250

seq1  GTGCTTCTTGCTTGCCTGGTCTCACAGTTTGCTGGTGAGTGCATGCACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCTTGCTTGCCTGGTCTCACAGTTTGCTGGTGAGTGCATGCACCC  300

seq1  TATTATTGATGCCACCCTTCCCAGGCCACTCATTAGCTTCTTGGCTTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTGATGCCACCCTTCCCAGGCCACTCATTAGCTTCTTGGCTTTCC  350

seq1  ACTGTAGGATGGGCAGAGATTCTTGAGAAAGTCTCAAGCCTTCTTGCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGGATGGGCAGAGATTCTTGAGAAAGTCTCAAGCCTTCTTGCTTG  400

seq1  ACTGAAACTCCTGAGACACCCAGCTTCATGGACTACAGAGACAAGATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAACTCCTGAGACACCCAGCTTCATGGACTACAGAGACAAGATTAT  450

seq1  CAGTCTGTCTATCATGGCAGCTGTTGCTTGACTACATAGCCCTGATTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGTCTATCATGGCAGCTGTTGCTTGACTACATAGCCCTGATTATG  500

seq1  CAAGCCAAGTGAATAAGATCATATATTAATACATACATAATAATATATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCAAGTGAATAAGATCATATATTAATACATACATAATAATATATCA  550

seq1  TATATAATCATCTATGTGATCTGTAGGTATATAAGCATATATATGTATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATCATCTATGTGATCTGTAGGTATATAAGCATATATATGTATAT  600

seq1  ATATTATAGTTCTGTTCTTCTAGAACACTGTCAAAATACTGAATTTAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATAGTTCTGTTCTTCTAGAACACTGTCAAAATACTGAATTTAAAG  650

seq1  AGCAGTTATTAGTATTATCTTCCTGTTTAAAAAAACTACCTAAGTTAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTATTAGTATTATCTTCCTGTTTAAAAAAACTACCTAAGTTAAAT  700

seq1  AAAACCATTAAGAAATATTATAGTACAAATCTAAGACACCTAAAATGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCATTAAGAAATATTATAGTACAAATCTAAGACACCTAAAATGGGT  750

seq1  CTCACAAGCCCAGGAAACAGGTACAATCAGGGATGAGCTGCTTTTTTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAAGCCCAGGAAACAGGTACAATCAGGGATGAGCTGCTTTTTTTTA  800

seq1  ATAGATAATGTGTTTCCCTAGATGTCTCAGCATCTATACCCATCTGTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAATGTGTTTCCCTAGATGTCTCAGCATCTATACCCATCTGTTTG  850

seq1  CTGTGGCTTGTGACCCCCATTCCTTCTTCAAAGCCAGCAGTGTGGCATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCTTGTGACCCCCATTCCTTCTTCAAAGCCAGCAGTGTGGCATCT  900

seq1  TACCAAGATTTCTCTTT-GGCTTTCCCTTGGCTTTCTGATCCTTGTGATC  949
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TACCAAGATTTCTCTTTGGGCTTTCCCTTGGCTTTCTGATCCTTGTGATC  950

seq1  TCCATTGAAAGAATTCAGGCAAGATACACAGAACATAACATAGAAGGTAG  999
      ||||||||||| |||||||| ||||||||||||||| |||||||  ||||
seq2  TCCATTGAAAG-ATTCAGGC-AGATACACAGAACAT-ACATAGA--GTAG  995

seq1  ACTATAT-TGTAAGGAGAAAAGTGGGATGTCATAAAGGGATAGGAGTGGG  1048
      ||| ||| ||||| ||| ||||| ||||||||||||||||||||||||||
seq2  ACT-TATATGTAA-GAG-AAAGT-GGATGTCATAAAGGGATAGGAGTGGG  1041

seq1  AGAGCGTCAAAGAGTTCATT-GTGGAGAAAAATAATCCCACAGAATCAG  1096
      |||||||| ||||||||||| ||||||||||||||||||||||| ||||
seq2  AGAGCGTC-AAGAGTTCATTGGTGGAGAAAAATAATCCCACAGATTCAG  1089