BAC Information

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BAC

Clone NameB6Ng01-088K20
Chromosome12 (Build37)17 (Build37)
Map Location 68,544,371 - 68,545,42489,414,836 - 89,415,190
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMdga2
Downstream geneLOC100040745, LOC100040681
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088K20.bB6Ng01-088K20.g
ACCDH901466DH901467
length1,143904
definitionDH901466|Mus musculus domesticus DNA, BAC clone: B6Ng01-088K20, 5' end.DH901467|Mus musculus domesticus DNA, BAC clone: B6Ng01-088K20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(68,544,371 - 68,545,424)(89,414,836 - 89,415,190)
sequence
gaattctcaactaaaaactaccaaatagctgagaagcattgctcaacatc
cttagtcatcagggaaatgcaaatcaaaacaaccctgagattccacctca
ccccagtcagaatgaccaagatcaaaactcaggttactgcagatgctggt
gagaatgtagagaaagaaaaagggaatattttctcttttatcagtttcag
tatgtctatttttatgttgaggcatttaatgcatttggacttaaatttta
tctggggtataaatatggatctattacactcttctacatgtagacatcca
gtttgactagtaccattttttgaagatgctgtgtatgtctgacttcttta
tcaaaaatcaggttctatatattcgggtcatcaattcaattccattgatc
aatgtgtctatttttatgccaataccatgtggttcttattattatagctt
tgcattataaattgaaattgggagtggagagacctccaacagttatttta
ttgtttggggctgctttagctatctcgggttgtttctcaatatcaagtta
agaattgtctttccaagacctgtaaagaattgtgttggaaacttctggaa
atgagcaatgagacatcttgttggtgttgttgttcttgtattatcaggga
cagaacgttatgaagagagacggtaatagggacaatagggctgagaagag
tagcctgttgtgagtggccatctagctaccaatgtctgggacgatgatga
ggtaccaacccaagctgccactgagagacatgtctagtttcatagatatg
cagtggcaagggtcagaattgatgtctgtggctcaaaataggactataga
atatggggatgtccttggttgttacagccacagggagtaagagctgtaca
gaactggctctgcccttcactggctgctgtgctctggagagctgttcctg
tctctcactagtacccatactccagagcaattgcagtgttcttgcctgga
tagcatagtagaactggcccaaggatgaagagcccaggatatctggtctg
cccctcctttgcagtgagaaggtttaggtgcctggataatgcatctcttt
cgtccccttgccattgcaagtagttgagagggtggcctgaggg
gaattcatttccaatttgtctataagataagtgttgttgcccttaagctg
tgttctggctttaaagttaccttaaaatacaatctgagcaatattctctt
tcctaaatttctttcttagccattcctttattaaaattaatgagtcaaaa
ttatgtatgtacatatatataattttaactgtaagtcaatgctgaatctt
atctaataaacaatcttcataagatatttgattaacatttatacaaacaa
attacttctatatatttgaaacataagctgataatgcacacatttatact
aatttttattttttattaagtaatttttcagatctccttggtatttgtct
ctacattttttttttcatttaggtgcatagagaaaattactgaagttatt
tactctgggatagattacatgtcattaagcacaaaaagatacaatttgca
aaacacaagaaaatcaagaagaaggaagaccaacgtgtggatacttcatt
cctccttagaatagggaacaaaatacctatgaaaggagttacagagacaa
agtttggagctaagacaaaaggatggaccatctagagactgcctcacccg
gggatccatcccataatcaaccaccaaacccagactctattacatatgcc
agcaagattttgctgaagggaccctgatatagctgtctcgtatgaggcta
tgccagtgcctggcaaatacagaagtggatgttcacagtcagctattgga
tggatcacagggcccccaatggagaagctagagaaagtacccaaggagct
ggggggatctgcaaccctataggtggaacaaaaatatgaactaaaccagt
tccctcagagttcttgtctctagctgcatatgtagcagaaggtggcttag
tcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_68544371_68545424
seq2: B6Ng01-088K20.b_140_1189

seq1  CACCTCACCCCAGTCAGAATGACCAAGATCAAAACTCAGGTTACTGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCACCCCAGTCAGAATGACCAAGATCAAAACTCAGGTTACTGCAGA  50

seq1  TGCTGGTGAGAATGTAGAGAAAGAAAAAGGGAATATTTTCTCTTTTATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTGAGAATGTAGAGAAAGAAAAAGGGAATATTTTCTCTTTTATCA  100

seq1  GTTTCAGTATGTCTATTTTTATGTTGAGGCATTTAATGCATTTGGACTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGTATGTCTATTTTTATGTTGAGGCATTTAATGCATTTGGACTTA  150

seq1  AATTTTATCTGGGGTATAAATATGGATCTATTACACTCTTCTACATGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTATCTGGGGTATAAATATGGATCTATTACACTCTTCTACATGTAG  200

seq1  ACATCCAGTTTGACTAGTACCATTTTTTGAAGATGCTGTGTATGTCTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCAGTTTGACTAGTACCATTTTTTGAAGATGCTGTGTATGTCTGAC  250

seq1  TTCTTTATCAAAAATCAGGTTCTATATATTCGGGTCATCAATTCAATTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATCAAAAATCAGGTTCTATATATTCGGGTCATCAATTCAATTCC  300

seq1  ATTGATCAATGTGTCTATTTTTATGCCAATACCATGTGGTTCTTATTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATCAATGTGTCTATTTTTATGCCAATACCATGTGGTTCTTATTATT  350

seq1  ATAGCTTTGCATTATAAATTGAAATTGGGAGTGGAGAGACCTCCAACAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTTGCATTATAAATTGAAATTGGGAGTGGAGAGACCTCCAACAGT  400

seq1  TATTTTATTGTTTGGGGCTGCTTTAGCTATCTCGGGTTGTTTCTCAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATTGTTTGGGGCTGCTTTAGCTATCTCGGGTTGTTTCTCAATAT  450

seq1  CAAGTTAAGAATTGTCTTTCCAAGACCTGTAAAGAATTGTGTTGGAAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTAAGAATTGTCTTTCCAAGACCTGTAAAGAATTGTGTTGGAAACT  500

seq1  TCTGGAAATGAGCAATGAGACATCTTGTTGGTGTTGTTGTTCTTGTATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAATGAGCAATGAGACATCTTGTTGGTGTTGTTGTTCTTGTATTA  550

seq1  TCAGGGACAGAACGTTATGAAGAGAGACGGTAATAGGGACAATAGGGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGACAGAACGTTATGAAGAGAGACGGTAATAGGGACAATAGGGCTG  600

seq1  AGAAGAGTAGCCTGTTGTGAGTGGCCATCTAGCTACCAATGTCTGGGACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGTAGCCTGTTGTGAGTGGCCATCTAGCTACCAATGTCTGGGACG  650

seq1  ATGATGAGGTACCAACCCAAGCTGCCACTGAGAGACATGTCTAGTTTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAGGTACCAACCCAAGCTGCCACTGAGAGACATGTCTAGTTTCAT  700

seq1  AGATATGCAGTGGCAAGGGTCAGAATTGATGTCTGTGGCTCAAAATAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATGCAGTGGCAAGGGTCAGAATTGATGTCTGTGGCTCAAAATAGGA  750

seq1  CTATAGAATATGGGGATGTCCTTGGTTGTTACAGCCACAGGGAGTAAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGAATATGGGGATGTCCTTGGTTGTTACAGCCACAGGGAGTAAGAG  800

seq1  CTGTACAGAACTGGCTCTGCCCTTCACTGGCTGCTGTGCTCTGGAGAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACAGAACTGGCTCTGCCCTTCACTGGCTGCTGTGCTCTGGAGAGCT  850

seq1  GTTCCTGTCTCTCACTAGTACCCATACTCCAGAGCAATTGCAGTGTTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGTCTCTCACTAGTACCCATACTCCAGAGCAATTGCAGTGTTCTT  900

seq1  GCCTGGATAGCATAGTAGAACTGGCCCAAGGATG-AGAGCCCAGGATATC  949
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCCTGGATAGCATAGTAGAACTGGCCCAAGGATGAAGAGCCCAGGATATC  950

seq1  TGGTCCTGCCCCTCCTATGCAGTGAGAAGGTTTAGGTGCCTGGATGATGC  999
      |||| ||||||||||| |||||||||||||||||||||||||||| ||| 
seq2  TGGT-CTGCCCCTCCTTTGCAGTGAGAAGGTTTAGGTGCCTGGATAATG-  998

seq1  CATCCTCTTCGTCCCCCTTGCCATTTGCAGTAGTTTTGAGAGGTGGCCCT  1049
      ||||   ||||| ||||||||||||   |||||  ||||||||  | |||
seq2  CATCTCTTTCGT-CCCCTTGCCATTGCAAGTAG--TTGAGAGGGTGGCCT  1045

seq1  GAGGG  1054
      |||||
seq2  GAGGG  1050

seq1: chr17_89414836_89415190
seq2: B6Ng01-088K20.g_503_860 (reverse)

seq1  TTGGTACTTTCTCTAGCTCCTCCATTGGGGTCCCTGTGTTCCATCCAATA  50
      | |||||||||||||||| ||||||||||| ||||||| |||||||||||
seq2  TGGGTACTTTCTCTAGCTTCTCCATTGGGGGCCCTGTGATCCATCCAATA  50

seq1  GCTGACTGTGAGCATCCACTTCTGAATTTGCCAGGCACTGGCATAGCCTC  100
      ||||||||||| |||||||||||| |||||||||||||||||||||||||
seq2  GCTGACTGTGAACATCCACTTCTGTATTTGCCAGGCACTGGCATAGCCTC  100

seq1  ACAAGAGACAGCTATATCAGGGTCCTTTCAGCAAAATCTTGCTGGCATAT  150
      | | ||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATACGAGACAGCTATATCAGGGTCCCTTCAGCAAAATCTTGCTGGCATAT  150

seq1  GCAAT--AGTCTGCGTTTGGTGGCTGATTATGAGATGGATCCCCAGGTGA  198
      | |||  |||||| ||||||||| |||||||| ||||||||||| |||||
seq2  GTAATAGAGTCTGGGTTTGGTGGTTGATTATGGGATGGATCCCCGGGTGA  200

seq1  GGTAGTCTCTGGATGGTCCATCTTTTTGTCTTAGCTCCAAAATTTGTCTC  248
      || ||||||| ||||||||||| |||||||||||||||||| ||||||||
seq2  GGCAGTCTCTAGATGGTCCATCCTTTTGTCTTAGCTCCAAACTTTGTCTC  250

seq1  TGTAACTCCTTCCATGGGTATTTTGTTCCCTATTCTAA-GAGGAATGAAG  297
      ||||||||||| ||| |||||||||||||||||||||| |||||||||||
seq2  TGTAACTCCTTTCATAGGTATTTTGTTCCCTATTCTAAGGAGGAATGAAG  300

seq1  TATCCATGCATTGGTCTTCCTTCTTCTTGATTTTCTTGTGTTTTGCAAAT  347
      ||||||  | ||||||||||||||||||||||||||||||||||||||||
seq2  TATCCACACGTTGGTCTTCCTTCTTCTTGATTTTCTTGTGTTTTGCAAAT  350

seq1  TGTATCTT  355
      ||||||||
seq2  TGTATCTT  358