BAC Information

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BAC

Clone NameB6Ng01-089D13
Chromosome17 (Build37)
Map Location 65,930,262 - 66,056,097
singlet/doubletdoublet
Overlap geneVapa, Txndc2, Rab31
Upstream geneMan2a1, 4930583I09Rik, LOC100043871, E130009J12Rik, LOC668655, LOC674701
Downstream genePpp4r1, Ralbp1, LOC100043873, LOC100043592, Twsg1, Ankrd12, 5430411C19Rik, Ndufv2, ORF19, Ddx11, LOC100043599, LOC100043875, 1110012J17Rik, LOC100043876, Rab12, 9130404H23Rik, Ptprm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089D13.bB6Ng01-089D13.g
ACCDH901855DH901856
length1,1881,120
definitionDH901855|Mus musculus domesticus DNA, BAC clone: B6Ng01-089D13, 5' end.DH901856|Mus musculus domesticus DNA, BAC clone: B6Ng01-089D13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,054,896 - 66,056,097)(65,930,262 - 65,931,403)
sequence
gaattctttgtcgtttcatccatttcatgattttttttttaatatggcat
agaattcaggatctttgggaatactgtctgaccttgattttgttgttgtt
tcttgtggtttttctatcacagtttgggtaactgtgggctacaatggata
ataaatagctcttttgagttttattttggggtcatcctagatcatctctc
tgagaatgctattattccaggactgctgggaaagaaactgctattccagc
aacaaacaaggtgcgatctgccaggagagtctgtccaagccagcaagtac
caggccttttcagggccttctctttctctgtgtaccaggagcctctgctg
gccatacttcgctttgcagcctgtgggtgaggcaggtcctcccagacttc
agagatttccggttggtacccctaggctggctaatgtctcaagtatgttg
tgtagtggggaacgcaagcagatccactgaggactgtactgtagggtcag
gttttgtgctcccccagtgcagctgcagtcaccccgcagagaagattgag
ctatgaagtccaaacactctcctggaacttgagttcttacgtcaccagta
gcgagcccccaaacagatagctagctcccagagtttggaatgtccactgg
cattaggctcagcacgatcattctctgcagttatccctcaggtgagtctg
gccccagcaaccaagggtcaggactgctgaccacagtgcccttcattgct
gaattcctcaagatatctgcattggaccttcttctctgcaccaccttcca
tggctgactactagccaagtgccgcagcaggttgtaggtttctattctgt
gatgggttctactctctcagctctgggattaccttggtctgaaacacagg
tttcttccggtatgactcagcacagagtggcaaatggtccttgtcctact
ttgtttctgaactgagacatcgcagcagaaactcagcagtaactgaagca
agaaccatgctgactggcttgctgtctggccaccctcaccgagttactta
ttgtagtagcccaaacccccccgcctagggaatggtgctaaccacagtga
gctggagccttcccccgtcatcactggctggattggggcacccctcaacc
gaggtccatttctaggtgtcctaggtgtgccagttgac
gaattcagtacatgtgtatggctttgaagaggagcaagaataaattccca
tctaccttggaaacctgtggaattaggaaaaattctaaaactgtactaaa
gcgataaataaagccgaataattctataaatctgctaaaacaattaaaat
tagtacatttatgtgatgtaaattacacctcaataacaatgacttttaaa
actgaaaatgagaaatgtattcctataaaacatgtaagcttacttccaat
gagccctacagcattttggattggctacagccatcagcaagaaactatca
atagcacacttatactccagccaacagcaagaaactatcaatagcacacc
tatactccagccatcagcaagaaactatcaatagcacacctatactccat
gtttactgactcagtaaaacctgaaaacccacatgggaggcacacaagga
tttatttttagatagataatatattgcaagatttagagaaaagcagagta
gtttagagtctttaatatgcgcaaaacaaacccaagggacatatataaag
ggtcaccatggagcatagactgtacgtaatttagactacgtacaggaacc
cgtctctgaggctcctgctggcaatcgcttctttttgtttaagtacctta
tctgctccatgtaaaagaatgaactgctccctacttatactgagtttaca
tttctgatagtcctgtggttgagtttagatgtgactttgccctggcttct
tctcctagtaaagcaatagtttctcaaagcagtggttatttgtgacagta
tgtgtcacaaggtcctggagaaattatagatacctcttactatatggctg
gctgttatcagatgctgtttataaaacctaactagagaatctgtactacc
tcaaataaactatttatcctcacaccattcctcaacacttacacagcatg
gcagctctctagtgtttaatgtactgtttttgcattagatgtgcagtgat
ctcgtctcccggctaggacatgtgctgggatcctctcagaaggtgcccag
cactctgctgctaatagcatgctatggatagctagataggacaggtcaat
gtcatggtattggtgcattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_66054896_66056097
seq2: B6Ng01-089D13.b_48_1235 (reverse)

seq1  GTCAACTTGGCACAACCTAGGGACACCTAGGAAATGGGAACCTCAGCTGA  50
      |||||| |||||| ||||| ||||||||| |||||||  ||||| | |||
seq2  GTCAAC-TGGCAC-ACCTA-GGACACCTA-GAAATGG--ACCTCGGTTGA  44

seq1  GGGGTTGCACCAATCAGGCCAGTGATTGACGGGGGAAGGCT-CAGCTCAC  99
      |||| ||| ||||||  |||||||| ||||||||||||||| ||||||||
seq2  GGGG-TGCCCCAATCCAGCCAGTGA-TGACGGGGGAAGGCTCCAGCTCAC  92

seq1  TGTGGGTAGCACCATCCCCTAGGCGGGTGGGTCTGGGCTACTAC-ATAAG  148
      ||||| ||||||||| ||||||||||| |||| ||||||||||| |||||
seq2  TGTGGTTAGCACCATTCCCTAGGCGGGGGGGTTTGGGCTACTACAATAAG  142

seq1  TAAACTCGCTGAGGGTGGGCCAGACAGCAAGCCAGTCAGCATGGTTCTTG  198
      | |||||| ||||||| |||||||||||||||||||||||||||||||||
seq2  T-AACTCGGTGAGGGT-GGCCAGACAGCAAGCCAGTCAGCATGGTTCTTG  190

seq1  CTTCAGTTACTGCCTGAGTTTCTGCTGCGATGTCTCAGTTCAGAAAACAA  248
      |||||||||||| |||||||||||||||||||||||||||||| ||||||
seq2  CTTCAGTTACTG-CTGAGTTTCTGCTGCGATGTCTCAGTTCAG-AAACAA  238

seq1  AGTAGGACAAGGACCATTTTGCCACTCTGTGCCTGAGTCATACCGGAAGA  298
      |||||||||||||||| |||||||||||||| ||||||||||||||||||
seq2  AGTAGGACAAGGACCA-TTTGCCACTCTGTG-CTGAGTCATACCGGAAGA  286

seq1  AACCTGTTGTTTCAGACCAAGGTAATCCCAGAGCCTGAGAGAGTAGAA-C  347
      |||||| |||||||||||||||||||||||||| |||||||||||||| |
seq2  AACCTG-TGTTTCAGACCAAGGTAATCCCAGAG-CTGAGAGAGTAGAACC  334

seq1  CATCACAGAATAGAAACCTACAACCTGCTGCGGCACTTGGCTAGTAGTCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACAGAATAGAAACCTACAACCTGCTGCGGCACTTGGCTAGTAGTCA  384

seq1  GCCATGGAAGGTGGTTGCAGAGAAGAAGGTCCAATGCAGATATCTTGAGG  447
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCCATGGAAGGTGG-TGCAGAGAAGAAGGTCCAATGCAGATATCTTGAGG  433

seq1  AATTCAGCAATGAAGGGCACTGTGGTCAGCAGTCCTGACCCTTGGTTGCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGCAATGAAGGGCACTGTGGTCAGCAGTCCTGACCCTTGGTTGCT  483

seq1  GGGGCCAGACTCACCTGAGGGATAACTGCAGAGAATGATCGTGCTGAGCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCAGACTCACCTGAGGGATAACTGCAGAGAATGATCGTGCTGAGCC  533

seq1  TAATGCCAGTGGACATTCCAAACTCTGGGAGCTAGCTATCTGTTTGGGGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCCAGTGGACATTCCAAACTCTGGGAGCTAGCTATCTGTTTGGGGG  583

seq1  CTCGCTACTGGTGACGTAAGAACTCAAGTTCCAGGAGAGTGTTTGGACTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCTACTGGTGACGTAAGAACTCAAGTTCCAGGAGAGTGTTTGGACTT  633

seq1  CATAGCTCAATCTTCTCTGCGGGGTGACTGCAGCTGCACTGGGGGAGCAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCTCAATCTTCTCTGCGGGGTGACTGCAGCTGCACTGGGGGAGCAC  683

seq1  AAAACCTGACCCTACAGTACAGTCCTCAGTGGATCTGCTTGCGTTCCCCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTGACCCTACAGTACAGTCCTCAGTGGATCTGCTTGCGTTCCCCA  733

seq1  CTACACAACATACTTGAGACATTAGCCAGCCTAGGGGTACCAACCGGAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACAACATACTTGAGACATTAGCCAGCCTAGGGGTACCAACCGGAAA  783

seq1  TCTCTGAAGTCTGGGAGGACCTGCCTCACCCACAGGCTGCAAAGCGAAGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAAGTCTGGGAGGACCTGCCTCACCCACAGGCTGCAAAGCGAAGT  833

seq1  ATGGCCAGCAGAGGCTCCTGGTACACAGAGAAAGAGAAGGCCCTGAAAAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCAGCAGAGGCTCCTGGTACACAGAGAAAGAGAAGGCCCTGAAAAG  883

seq1  GCCTGGTACTTGCTGGCTTGGACAGACTCTCCTGGCAGATCGCACCTTGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTACTTGCTGGCTTGGACAGACTCTCCTGGCAGATCGCACCTTGT  933

seq1  TTGTTGCTGGAATAGCAGTTTCTTTCCCAGCAGTCCTGGAATAATAGCAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCTGGAATAGCAGTTTCTTTCCCAGCAGTCCTGGAATAATAGCAT  983

seq1  TCTCAGAGAGATGATCTAGGATGACCCCAAAATAAAACTCAAAAGAGCTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAGAGATGATCTAGGATGACCCCAAAATAAAACTCAAAAGAGCTA  1033

seq1  TTTATTATCCATTGTAGCCCACAGTTACCCAAACTGTGATAGAAAAACCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATCCATTGTAGCCCACAGTTACCCAAACTGTGATAGAAAAACCA  1083

seq1  CAAGAAACAACAACAAAATCAAGGTCAGACAGTATTCCCAAAGATCCTGA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAACAACAACAAAATCAAGGTCAGACAGTATTCCCAAAGATCCTGA  1133

seq1  ATTCTATGCCATATTAAAAAAAAAATCATGAAATGGATGAAACGACAAAG  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATGCCATATTAAAAAAAAAATCATGAAATGGATGAAACGACAAAG  1183

seq1  AATTC  1202
      |||||
seq2  AATTC  1188

seq1: chr17_65930262_65931403
seq2: B6Ng01-089D13.g_68_1187

seq1  GAATTCAGTACATGTGTATGGCTTTGAAGAGGAGCAAGAATAAATTCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTACATGTGTATGGCTTTGAAGAGGAGCAAGAATAAATTCCCA  50

seq1  TCTACCTTGGAAACCTGTGGAATTAGGAAAAATTCTAAAACTGTACTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTTGGAAACCTGTGGAATTAGGAAAAATTCTAAAACTGTACTAAA  100

seq1  GCGATAAATAAAGCCGAATAATTCTATAAATCTGCTAAAACAATTAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATAAATAAAGCCGAATAATTCTATAAATCTGCTAAAACAATTAAAAT  150

seq1  TAGTACATTTATGTGATGTAAATTACACCTCAATAACAATGACTTTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACATTTATGTGATGTAAATTACACCTCAATAACAATGACTTTTAAA  200

seq1  ACTGAAAATGAGAAATGTATTCCTATAAAACATGTAAGCTTACTTCCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAATGAGAAATGTATTCCTATAAAACATGTAAGCTTACTTCCAAT  250

seq1  GAGCCCTACAGCATTTTGGATTGGCTACAGCCATCAGCAAGAAACTATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTACAGCATTTTGGATTGGCTACAGCCATCAGCAAGAAACTATCA  300

seq1  ATAGCACACTTATACTCCAGCCAACAGCAAGAAACTATCAATAGCACACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCACACTTATACTCCAGCCAACAGCAAGAAACTATCAATAGCACACC  350

seq1  TATACTCCAGCCATCAGCAAGAAACTATCAATAGCACACCTATACTCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTCCAGCCATCAGCAAGAAACTATCAATAGCACACCTATACTCCAT  400

seq1  GTTTACTGACTCAGTAAAACCTGAAAACCCACATGGGAGGCACACAAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTGACTCAGTAAAACCTGAAAACCCACATGGGAGGCACACAAGGA  450

seq1  TTTATTTTTAGATAGATAATATATTGCAAGATTTAGAGAAAAGCAGAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTAGATAGATAATATATTGCAAGATTTAGAGAAAAGCAGAGTA  500

seq1  GTTTAGAGTCTTTAATATGCGCAAAACAAACCCAAGGGACATATATAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGAGTCTTTAATATGCGCAAAACAAACCCAAGGGACATATATAAAG  550

seq1  GGTCACCATGGAGCATAGACTGTACGTAATTTAGACTACGTACAGGAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACCATGGAGCATAGACTGTACGTAATTTAGACTACGTACAGGAACC  600

seq1  CGTCTCTGAGGCTCCTGCTGGCAATCGCTTCTTTTTGTTTAAGTACCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTCTGAGGCTCCTGCTGGCAATCGCTTCTTTTTGTTTAAGTACCTTA  650

seq1  TCTGCTCCATGTAAAAGAATGAACTGCTCCCTACTTATACTGAGTTTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCCATGTAAAAGAATGAACTGCTCCCTACTTATACTGAGTTTACA  700

seq1  TTTCTGATAGTCCTGTGGTTGAGTTTAGATGTGACTTTGCCCTGGCTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGATAGTCCTGTGGTTGAGTTTAGATGTGACTTTGCCCTGGCTTCT  750

seq1  TCTCCTAGTAAAGCAATAGTTTCTCAAAGCAGGTGGTTATTTGTGACAGT  800
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCTCCTAGTAAAGCAATAGTTTCTCAAAGCA-GTGGTTATTTGTGACAGT  799

seq1  ATGTGTCACAAGGTCCTGGAGAAATTATAGATACCTCTTAACTATATGGC  850
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATGTGTCACAAGGTCCTGGAGAAATTATAGATACCTCTT-ACTATATGGC  848

seq1  TGGCTGTTATCAGATGCTGTTTATAAAACCTAACTAGAGAATCTGTACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTTATCAGATGCTGTTTATAAAACCTAACTAGAGAATCTGTACTA  898

seq1  CCTCAAAATAAACTATTTTATCCTCACACCATTCCTCAACCACTTACACA  950
      |||| |||||||||| ||||||||||||||||||||||| ||||||||||
seq2  CCTC-AAATAAACTA-TTTATCCTCACACCATTCCTCAA-CACTTACACA  945

seq1  GCATGGCCAGCCTCTCTAGTGTTTAATGTACTGTTTTTGGCATTAGGAAT  1000
      |||||| ||| ||||||||||||||||||||||||||| |||||||  ||
seq2  GCATGG-CAG-CTCTCTAGTGTTTAATGTACTGTTTTT-GCATTAG--AT  990

seq1  GTGCAGTGAATCTTCGTCTTCCCCGGGCTAGGGACATGTGCTGGGATCCT  1050
      |||||||| ||| ||||||   || ||||| |||||||||||||||||||
seq2  GTGCAGTG-ATC-TCGTCT---CCCGGCTA-GGACATGTGCTGGGATCCT  1034

seq1  CTCAGAAGGTGCCCAGCACTCTGCTGCTAATTAGCAGTGCTAATGTGATA  1100
      |||||||||||||||||||||||||||||| ||||| |||| ||| ||||
seq2  CTCAGAAGGTGCCCAGCACTCTGCTGCTAA-TAGCA-TGCT-ATG-GATA  1080

seq1  GCTAGGATAGGACAGTCAAAGGTCTATGTATTGGGTGCATTT  1142
      |||| ||||||||||   || |||   ||||| |||||||||
seq2  GCTA-GATAGGACAGGTCAATGTCATGGTATT-GGTGCATTT  1120