BAC Information

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BAC

Clone NameB6Ng01-089E05
Chromosome17 (Build37)
Map Location 82,921,983 - 82,923,177
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc8a1, EG668832, LOC100043707, LOC625467, LOC668836, EG433141
Downstream geneEG625514, LOC100043711, LOC100043900, AW548124, EG545226, Eml4, Cox7a2l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089E05.bB6Ng01-089E05.g
ACCDH901885DH901886
length1,2311,172
definitionDH901885|Mus musculus domesticus DNA, BAC clone: B6Ng01-089E05, 5' end.DH901886|Mus musculus domesticus DNA, BAC clone: B6Ng01-089E05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaatagatacctgggataggcttgtaaggctttcataattagaa
atttgatatcatatttttatctcaatattctaagactctaattcctatct
tttgatgagctgaagggcaaagaatttattatcaagagctctcataataa
agctgtacaaaatgggtggcttgaaataatggaaatttgtctaacagtca
ttggagtttagaagtccaaatatagctttgaggattgatttctggagtca
ctgaaagattctgttaagtaccactcctatggttacttgtagttccagcc
tgtgccctggactttcctctgctctgcctgtgttatgctttcagatacaa
tgggagccctgtagtagaattttcaggggcttgctatgcccctttggtct
caaataacaccaggctgtttctatgctctgtttagatggttttaactccc
cccaaattgattctttcctggcttgttttgctccatgtgttctcatggca
aatcccatggtgaaatgttcatcacaaccctcctggaccttctgtctcat
cactacctcttttcctacctaattctcctcctcctcctcctcctcttccc
cctcttcctctccaatccctctccctctgtctctctgggaccctccaact
tgaatcagaagtcccaccctcttctcttctgtacagctaattgactgatc
aattctttttaaaaaaccaaccaggaggtgatggagaagatgtttataac
acagagacaggggaagcttcataccctctagagagtaccagagacccagg
aggtggggtactctcaggactcatggggtgaccttagccaaaatgtgcag
taatggggagagggaagtggaagagtccactccagtagatagacagggcc
tgaagtgagggaatggagcatatgtgggctggtttgccagctcacagtca
aatttcagacccagaattgttctgtctaaagaactgcaaagacaaaatgg
agaaaagacagagcaaaggtggtcatgactgtcccacttgaattcatctc
atgggggaacctaggcctgaccctactatgctatgattgtcttcaataag
agctgcatggctggctctgtgaggccctacactagctaacaagacaagcg
gatacattcgccaccatgactgatcagactagtgatagggaggatgtgaa
cctgaaaggagacgaccttagtagtatcaca
gaattctgttgacagatgtgtgtcatagcagccgagttcagatccttctt
caagctcctcccaaaacagcacagcaatggtctcaggctgacctaccatt
actggctgctaggtgatatttactgggtagataagactcagatgcctgat
agcacgtgaccctgcacaaatgcatcttttgtacatttttttcctttaaa
gaacaaataaaggacttcagtatctaagaattgtgaataagacaagacac
aaattacagagagcagtcaacttcattatgtaataaatgattggtgttta
ataaatcacttgaaatatggttaaatagcaactacatatcattttttcat
tgtagtttaaaactttaaaacatagttaagacttttttcattttttacat
tttattatggtgaaatacatgtagaagacactgtgttaacatatttattt
cattaatttgctttatgaatatattttaattatagtctctcccctcccct
agttcctccaagatcctccccttcctcatactcacgcggttttccttttt
cctctttgtctttctgaaaaacaaaacatgaaaaataaaaacaaacaaaa
caaattttaaaaaaggaaaacagaaagtaaaaatcacccagaatcccgca
gaccctgaacctgttttcattggtcagctacttctggatggtactacaaa
atactctgaacagtgccgaaggaaaaaagaaaccaacaacatagcccagc
ttcaaaccctgcaacctacagggttgacccacccatgaaatattctggtg
taataatggcacacatataatgcaagaaacccaccactttcagcagaatt
taaggtccatttcatcagttacaacgtatttataactgacactgctaatg
agtaacaacatgaacgtagataagagtgaactctagggacaaactattac
tatattattctactacagaagattgactctaaatattagcctactataag
tcatttgaataatggtggatctattcatgtttctacaattagacttctac
taatgggctcttgcaaatatgctactgaaaaatgaatggggggtgaatct
gaagtataatattagacaaattttctttgattcctacttttaattcttat
gttttccaaacatggatttata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_82921983_82923177
seq2: B6Ng01-089E05.g_70_1241

seq1  GAATTCTGTTGACAGATGTGTGTCATAGCAGCCGAGTTCAGATCCTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTGACAGATGTGTGTCATAGCAGCCGAGTTCAGATCCTTCTT  50

seq1  CAAGCTCCTCCCAAAACAGCACAGCAATGGTCTCAGGCTGACCTACCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTCCTCCCAAAACAGCACAGCAATGGTCTCAGGCTGACCTACCATT  100

seq1  ACTGGCTGCTAGGTGATATTTACTGGGTAGATAAGACTCAGATGCCTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTGCTAGGTGATATTTACTGGGTAGATAAGACTCAGATGCCTGAT  150

seq1  AGCACGTGACCCTGCACAAATGCATCTTTTGTACATTTTTTTCCTTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGTGACCCTGCACAAATGCATCTTTTGTACATTTTTTTCCTTTAAA  200

seq1  GAACAAATAAAGGACTTCAGTATCTAAGAATTGTGAATAAGACAAGACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAATAAAGGACTTCAGTATCTAAGAATTGTGAATAAGACAAGACAC  250

seq1  AAATTACAGAGAGCAGTCAACTTCATTATGTAATAAATGATTGGTGTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACAGAGAGCAGTCAACTTCATTATGTAATAAATGATTGGTGTTTA  300

seq1  ATAAATCACTTGAAATATGGTTAAATAGCAACTACATATCATTTTTTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCACTTGAAATATGGTTAAATAGCAACTACATATCATTTTTTCAT  350

seq1  TGTAGTTTAAAACTTTAAAACATAGTTAAGACTTTTTTCATTTTTTACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTTAAAACTTTAAAACATAGTTAAGACTTTTTTCATTTTTTACAT  400

seq1  TTTATTATGGTGAAATACATGTAGAAGACACTGTGTTAACATATTTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATGGTGAAATACATGTAGAAGACACTGTGTTAACATATTTATTT  450

seq1  CATTAATTTGCTTTATGAATATATTTTAATTATAGTCTCTCCCCTCCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAATTTGCTTTATGAATATATTTTAATTATAGTCTCTCCCCTCCCCT  500

seq1  AGTTCCTCCAAGATCCTCCCCTTCCTCATACTCACGCGGTTTTCCTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTCCAAGATCCTCCCCTTCCTCATACTCACGCGGTTTTCCTTTTT  550

seq1  CCTCTTTGTCTTTCTGAAAAACAAAACATGAAAAATAAAAACAAACAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTGTCTTTCTGAAAAACAAAACATGAAAAATAAAAACAAACAAAA  600

seq1  CAAATTTTAAAAAAGGAAAACAGAAAGTAAAAATCACCCAGAATCCCGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTTAAAAAAGGAAAACAGAAAGTAAAAATCACCCAGAATCCCGCA  650

seq1  GACCCTGAACCTGTTTTCATTGGTCAGCTACTTCTGGATGGTACTACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGAACCTGTTTTCATTGGTCAGCTACTTCTGGATGGTACTACAAA  700

seq1  ATACTCTGAACAGTGCCGAAGGAAAAAAGAAACCAACAACATAGCCCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTGAACAGTGCCGAAGGAAAAAAGAAACCAACAACATAGCCCAGC  750

seq1  TTCAAACCCTGCAACCTACAGGGTTGACCCACCCATGAAATATTCTGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACCCTGCAACCTACAGGGTTGACCCACCCATGAAATATTCTGGTG  800

seq1  TAATAATGGCACACATATAATGCAAGAAACCCACCACTTTCAGCAGAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATGGCACACATATAATGCAAGAAACCCACCACTTTCAGCAGAATT  850

seq1  TAAGGTCCATTTCATCAGTTACAACGTATATATAACTGACACTGCTAATG  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TAAGGTCCATTTCATCAGTTACAACGTATTTATAACTGACACTGCTAATG  900

seq1  AGGTAACAAACATGAACGTAGATAAGAGGTGAACTCTAGGGGACAAACTA  950
      | ||||| ||||||||||||||||||| |||||||||| |||||||||||
seq2  A-GTAAC-AACATGAACGTAGATAAGA-GTGAACTCTA-GGGACAAACTA  946

seq1  ATACTATATTATTCTACTACAGAAGATTGACTCTAAATATTAGCCTACTA  1000
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATATTATTCTACTACAGAAGATTGACTCTAAATATTAGCCTACTA  996

seq1  TTAAGTCATTTGAATAATGGTGAATCTATTCATGTTTTCTACAATTAGAC  1050
       ||||||||||||||||||||| ||||||||||| |||||||||||||||
seq2  -TAAGTCATTTGAATAATGGTGGATCTATTCATG-TTTCTACAATTAGAC  1044

seq1  TTCTACTAATGGGCTCTTGCAAATAATGCTACTGTAAAAATGAAATGGTG  1100
      |||||||||||||||||||||||| ||||||||| |||||||||  || |
seq2  TTCTACTAATGGGCTCTTGCAAAT-ATGCTACTG-AAAAATGAATGGGGG  1092

seq1  GTGAAATCTGAAGTATAAATAAATAAAAGACAAAAAATATTTCTTTGAAT  1150
      ||| ||||||||||||     ||||  |||||||     ||||||||| |
seq2  GTG-AATCTGAAGTAT-----AATATTAGACAAA----TTTTCTTTGATT  1132

seq1  CCTACTTTTAATTCTTTAATTATTTACCAAAACATGGAATTTATA  1195
      ||||||||||||||||  ||  |||  | |||||||| |||||||
seq2  CCTACTTTTAATTCTT--ATGTTTT--CCAAACATGG-ATTTATA  1172