BAC Information

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BAC

Clone NameB6Ng01-089N04
Chromosome17 (Build37)
Map Location 20,870,575 - 21,063,398
singlet/doubletdoublet
Overlap geneV1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4
Upstream geneEG627636, LOC100042273, LOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2
Downstream geneLOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089N04.bB6Ng01-089N04.g
ACCDH902300DH902301
length1,1851,088
definitionDH902300|Mus musculus domesticus DNA, BAC clone: B6Ng01-089N04, 5' end.DH902301|Mus musculus domesticus DNA, BAC clone: B6Ng01-089N04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,870,575 - 20,871,771)(21,062,302 - 21,063,398)
sequence
gaattcacaagtgaaactcatcgtgcaccacttacatcaataaataaaaa
attacctgtgggtgacaattacaggaatctataggttgtaatagcagcat
tttagaaaagtctagaacatatcctaataatatttagagttagatattcc
ctgaactacttcaactcacaaatagaaataggatatagacaactagactt
gttgaaattatctgtcattacatgaagaggttgttctctggtattttgag
ttggtgtacaactatgagggcataggttcatatctaggttaatgttcagg
aaatgtaatcaatgcagacatatactgtgcttgtataaatacaatcataa
tgcaagaactcatgttttccttggtagtttttgaggcattttatttttat
gaatgctttgcccttttatttacattgttgcagagaaactcattgtgtat
cagctgggtcagtgcacttctaattgatatgtggggatatctctggtttg
agactactgcttatttatataatgtgatttttgtctgtgaagacatcatc
acaagagtgccatttttgacagatgcattcttacgtattcttgataaaca
tactatccatggaaaaactaggaatagttcatgagatgtagaccctaacc
tcattcttaatgagagctagcatctcctatggtctttccatttcatttat
tctactatataataacaccaaatagtgaatcaaataagaaccaaagttat
tactgtttattcaccatcaaatgtgtgtctatgtttatatataggtatga
aaacatatatctatacatatatatatatacatacatacatatacatacac
atgtacacacacgagtgtacatatgtatatataattgtctgtagttttaa
tcacctatttccattccatttgttaatagttgtcacatcagcagttttat
tatagctctttcccacaatctgactctaaatgagcaagtatgcatgtgtc
attatgtatgcgttttgtgaaatttgaggaaaatttttgtcagattaaca
tgttcatatatttaacatgaattaatgttgaagtccctccttcttaagca
tttgtcaagaggtacagttcattttgtttggtacatttaagttttatggc
tcttagcatccatccgaatgtataattctttcatt
gaattccttctccagccttgagcacttgccagacctcctcattgtttttc
ttttcacagactcagtgcaagctgcatacctcgatcctttcttcagcaga
acattcagctcctgtgtgtgcagatcctggcatgacagccagcattgtgg
gagagagagggagattaaccttgagatagaggttcacagctctgtgattt
catctccctcagaactgtaatctttatctcacctgaaatgacaatgacaa
cacttgcattgagattcaagaacttttctgagacttcttcctgctggtaa
tcaccaaagatcatttgttatttctcgtgagtgtctcaaaagatagtgtt
tggaaagcctcctaggatttcaagatcacagaaggctgacagggacagta
ggtgcctggaacatcgggatttgatatgtgagagtgcacacaaagaagcc
agtgtgtatcattggatttcagatttctctgtgttctactacataaataa
cctattaaaactcagattccatggatgtccaattttagagcactcatcaa
agcaaagtcagtcaggaattcagggatatctaataatctttcattaagag
ggaaccataaaatcataatctgtaccagaaactcttgctttctttctaca
agtagatgatgaatacaactataaattaagggacttaaacatgccagaaa
acattacaaatatcagtccaacaatgccaaggagcctgaactctaataaa
ttctaataaaattgtccatatgtaactattccacataacattttaccaat
actcataaaatatcacataatttagctgttctttcttttttctgtttttt
ccttcattgtttttggatacacattttgtaatggttactatttttgctgc
acacaaagggtgcagtgtcataattaaatgtatgtatacaatgtgtaatg
agaatatcagtgtagtagctagacctttctgttctttaattttttttttt
cgtaattggtcatttacacatatacattatacatatgccctagatctgtc
catgcatcctcttgtggtggtggacttggactcatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_20870575_20871771
seq2: B6Ng01-089N04.b_49_1233

seq1  GAATTCACAAGTGAAACTCATCGTGCACCACTTACATCAATAAATAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAGTGAAACTCATCGTGCACCACTTACATCAATAAATAAAAA  50

seq1  ATTACCTGTGGGTGACAATTACAGGAATCTATAGGTTGTAATAGCAGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTGTGGGTGACAATTACAGGAATCTATAGGTTGTAATAGCAGCAT  100

seq1  TTTAGAAAAGTCTAGAACATATCCTAATAATATTTAGAGTTAGATATTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAAAGTCTAGAACATATCCTAATAATATTTAGAGTTAGATATTCC  150

seq1  CTGAACTACTTCAACTCACAAATAGAAATAGGATATAGACAACTAGACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTACTTCAACTCACAAATAGAAATAGGATATAGACAACTAGACTT  200

seq1  GTTGAAATTATCTGTCATTACATGAAGAGGTTGTTCTCTGGTATTTTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAATTATCTGTCATTACATGAAGAGGTTGTTCTCTGGTATTTTGAG  250

seq1  TTGGTGTACAACTATGAGGGCATAGGTTCATATCTAGGTTAATGTTCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTACAACTATGAGGGCATAGGTTCATATCTAGGTTAATGTTCAGG  300

seq1  AAATGTAATCAATGCAGACATATACTGTGCTTGTATAAATACAATCATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAATCAATGCAGACATATACTGTGCTTGTATAAATACAATCATAA  350

seq1  TGCAAGAACTCATGTTTTCCTTGGTAGTTTTTGAGGCATTTTATTTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGAACTCATGTTTTCCTTGGTAGTTTTTGAGGCATTTTATTTTTAT  400

seq1  GAATGCTTTGCCCTTTTATTTACATTGTTGCAGAGAAACTCATTGTGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTTTGCCCTTTTATTTACATTGTTGCAGAGAAACTCATTGTGTAT  450

seq1  CAGCTGGGTCAGTGCACTTCTAATTGATATGTGGGGATATCTCTGGTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGGTCAGTGCACTTCTAATTGATATGTGGGGATATCTCTGGTTTG  500

seq1  AGACTACTGCTTATTTATATAATGTGATTTTTGTCTGTGAAGACATCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTACTGCTTATTTATATAATGTGATTTTTGTCTGTGAAGACATCATC  550

seq1  ACAAGAGTGCCATTTTTGACAGATGCATTCTTACGTATTCTTGATAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGTGCCATTTTTGACAGATGCATTCTTACGTATTCTTGATAAACA  600

seq1  TACTATCCATGGAAAAACTAGGAATAGTTCATGAGATGTAGACCCTAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATCCATGGAAAAACTAGGAATAGTTCATGAGATGTAGACCCTAACC  650

seq1  TCATTCTTAATGAGAGCTAGCATCTCCTATGGTCTTTCCATTTCATTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTAATGAGAGCTAGCATCTCCTATGGTCTTTCCATTTCATTTAT  700

seq1  TCTACTATATAATAACACCAAATAGTGAATCAAATAAGAACCAAAGTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTATATAATAACACCAAATAGTGAATCAAATAAGAACCAAAGTTAT  750

seq1  TACTGTTTATTCACCATCAAATGTGTGTCTATGTTTATATATAGGTATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTTATTCACCATCAAATGTGTGTCTATGTTTATATATAGGTATGA  800

seq1  AAACATATATCTATACATATATATATATACATACATACATATACATACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATATATCTATACATATATATATATACATACATACATATACATACAC  850

seq1  ATGTACACACACGAGTGTACATATGTATATATAATTGTCTGTAGTTTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACACACACGAGTGTACATATGTATATATAATTGTCTGTAGTTTTAA  900

seq1  TCACCTATTTCCATTCCATTTGTTAATAGTTTGTCACATCAGGCAGTTTT  950
      ||||||||||||||||||||||||||||| ||||||||||| ||||||||
seq2  TCACCTATTTCCATTCCATTTGTTAATAG-TTGTCACATCA-GCAGTTTT  948

seq1  ATTATAGCTCTCTCCCACAATCTGACTCTAAATGAGCAAGTATGCATGTG  1000
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGCTCTTTCCCACAATCTGACTCTAAATGAGCAAGTATGCATGTG  998

seq1  TCATTATGTATGCGTTTTGTGAAATTTGAGGAGAAATTTTTGTCAGATTA  1050
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCATTATGTATGCGTTTTGTGAAATTTGAGGA-AAATTTTTGTCAGATTA  1047

seq1  ACATGTTCATATATTTAACATGAATTTATTGTTGTAGTCTCTCCTTCTTA  1100
      |||||||||||||||||||||||| ||| ||||| |||| ||||||||||
seq2  ACATGTTCATATATTTAACATGAA-TTAATGTTGAAGTCCCTCCTTCTTA  1096

seq1  TAGCATTTGTTCAAAGAGTACATGTTCATTTTGTTGTGTAACATTTATAG  1150
       |||||||| ||||   ||||| |||||||||||| ||  ||||||| ||
seq2  -AGCATTTG-TCAAGAGGTACA-GTTCATTTTGTT-TGGTACATTTA-AG  1141

seq1  TTTTATGGCT-TTAGCATCACATCAGAAATGTATAAATTTCTTTCATT  1197
      |||||||||| |||||||| |||| | |||||||||  ||||||||||
seq2  TTTTATGGCTCTTAGCATC-CATCCG-AATGTATAA--TTCTTTCATT  1185

seq1: chr17_21062302_21063398
seq2: B6Ng01-089N04.g_69_1156 (reverse)

seq1  TTCATGGAGTTCCAAGTCCAACCACCAACCAAGAGGATGCATGGGACAGA  50
      ||||| ||| ||||||||| |||||||  ||||||||||||| |||||||
seq2  TTCAT-GAG-TCCAAGTCC-ACCACCA--CAAGAGGATGCAT-GGACAGA  44

seq1  TCTAGGGCATATGTAT-ATGTATATGTGTAAATGAACAAATTAACGAAAA  99
      |||||||||||||||| |||||||||||||||||| |||  | |||||||
seq2  TCTAGGGCATATGTATAATGTATATGTGTAAATGACCAA--TTACGAAAA  92

seq1  AGAAAAA-TAAAGAACAGGAAAGTTCTAGCTAACTACACTGATATTCTCA  148
      | ||||| ||||||||| ||||| ||||||| ||||||||||||||||||
seq2  AAAAAAATTAAAGAACA-GAAAGGTCTAGCT-ACTACACTGATATTCTCA  140

seq1  TTACACATTGTATACATACATTTAATTATGACACTGCACCCTTTGTGTGC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACATTGTATACATACATTTAATTATGACACTGCACCCTTTGTGTGC  190

seq1  AGCAAAAATAGTAACCATTACAAAATGTGTATCCAAAAACAATGAAGGAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAATAGTAACCATTACAAAATGTGTATCCAAAAACAATGAAGGAA  240

seq1  AAAACAGGAAAAAAGAAAGAACAGCTAAATTATGTGATATTTTATGAGTA  298
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACA-GAAAAAAGAAAGAACAGCTAAATTATGTGATATTTTATGAGTA  289

seq1  TTGGTAAAATGTTATGTGGAATAGTTACATATGGACAATTTTATTAGAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAAAATGTTATGTGGAATAGTTACATATGGACAATTTTATTAGAAT  339

seq1  TTATTAGAGTTCAGGCTCCTTGGCATTGTTGGACTGATATTTGTAATGTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGAGTTCAGGCTCCTTGGCATTGTTGGACTGATATTTGTAATGTT  389

seq1  TTCTGGCATGTTTAAGTCCCTTAATTTATAGTTGTATTCATCATCTACTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCATGTTTAAGTCCCTTAATTTATAGTTGTATTCATCATCTACTT  439

seq1  GTAGAAAGAAAGCAAGAGTTTCTGGTACAGATTATGATTTTATGGTTCCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAGAAAGCAAGAGTTTCTGGTACAGATTATGATTTTATGGTTCCC  489

seq1  TCTTAATGAAAGATTATTAGATATCCCTGAATTCCTGACTGACTTTGCTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATGAAAGATTATTAGATATCCCTGAATTCCTGACTGACTTTGCTT  539

seq1  TGATGAGTGCTCTAAAATTGGACATCCATGGAATCTGAGTTTTAATAGGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAGTGCTCTAAAATTGGACATCCATGGAATCTGAGTTTTAATAGGT  589

seq1  TATTTATGTAGTAGAACACAGAGAAATCTGAAATCCAATGATACACACTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATGTAGTAGAACACAGAGAAATCTGAAATCCAATGATACACACTG  639

seq1  GCTTCTTTGTGTGCACTCTCACATATCAAATCCCGATGTTCCAGGCACCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTTGTGTGCACTCTCACATATCAAATCCCGATGTTCCAGGCACCT  689

seq1  ACTGTCCCTGTCAGCCTTCTGTGATCTTGAAATCCTAGGAGGCTTTCCAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCCTGTCAGCCTTCTGTGATCTTGAAATCCTAGGAGGCTTTCCAA  739

seq1  ACACTATCTTTTGAGACACTCACGAGAAATAACAAATGATCTTTGGTGAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTATCTTTTGAGACACTCACGAGAAATAACAAATGATCTTTGGTGAT  789

seq1  TACCAGCAGGAAGAAGTCTCAGAAAAGTTCTTGAATCTCAATGCAAGTGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGCAGGAAGAAGTCTCAGAAAAGTTCTTGAATCTCAATGCAAGTGT  839

seq1  TGTCATTGTCATTTCAGGTGAGATAAAGATTACAGTTCTGAGGGAGATGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTGTCATTTCAGGTGAGATAAAGATTACAGTTCTGAGGGAGATGA  889

seq1  AATCACAGAGCTGTGAACCTCTATCTCAAGGTTAATCTCCCTCTCTCTCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAGAGCTGTGAACCTCTATCTCAAGGTTAATCTCCCTCTCTCTCC  939

seq1  CACAATGCTGGCTGTCATGCCAGGATCTGCACACACAGGAGCTGAATGTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGCTGGCTGTCATGCCAGGATCTGCACACACAGGAGCTGAATGTT  989

seq1  CTGCTGAAGAAAGGATCGAGGTATGCAGCTTGCACTGAGTCTGTGAAAAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAAGAAAGGATCGAGGTATGCAGCTTGCACTGAGTCTGTGAAAAG  1039

seq1  AAAAACAATGAGGAGGTCTGGCAAGTGCTCAAGGCTGGAGAAGGAATTC  1097
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAATGAGGAGGTCTGGCAAGTGCTCAAGGCTGGAGAAGGAATTC  1088