BAC Information

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BAC

Clone NameB6Ng01-090H02
Chromosome17 (Build37)
Map Location 56,482,800 - 56,647,399
singlet/doubletdoublet
Overlap geneJmjd2b, Ptprs, EG668592
Upstream geneLOC677496, St6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1
Downstream geneZnrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1, Emr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090H02.bB6Ng01-090H02.g
ACCDH902740DH902741
length262886
definitionDH902740|Mus musculus domesticus DNA, BAC clone: B6Ng01-090H02, 5' end.DH902741|Mus musculus domesticus DNA, BAC clone: B6Ng01-090H02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,482,800 - 56,483,062)(56,646,513 - 56,647,399)
sequence
tctgttctttcagagagaaggttgtgacttggtgctgggcctgcctagaa
gcagagtgggggacagcagggacaaggtcaagagccccagggacggggca
gtttccagacagcagaggaggagggagagagaatggggttcttgctggtg
ctgggcctgggaagactagcccaggggatcctgaaggcatggtgacagtt
ggggtgtggtgtggtaggatctttagtgatgggagggttgccgcttccaa
ttatttaggaag
gaattcaaggccagcttggagcatacagtaagcccgaggcaggtgtcctg
gtctcagagttccccgatgcccaaggctgccaagcggcgagtcccgccca
ggaggacgtgtctgtggcctcacagtgaccaatcaagacgcggagccgag
catgacctcattgcaaaacacagccattggctgtgggtccgcgctgcgat
tgaatcaccagagcgcctgcgcagactcctgggggcctctccctgcggct
ttgggggtcagaaaggaaatgtgggcgcccctcccccatctcaaaaaagg
aaccctgcgtgcgagagcatcgagaacccgctccatgatccccattgccc
caaattctgcatggagacactgtggcccagccacacctcacgtctgggca
ggggtgggtggcggagctgtgacacccccgagcaaaggtcccgcggcagg
acaggacctggcagttggggagtggcagggtggaaggacggatagactga
acctgtgtagctggagtgcacgtgcagagaaggaggcaggactgcgggac
aggcccgggagagccgcgtgggctgcagacaggactgcagttggtctgaa
ggaggttgtgggtagaggagggagcgcgtcaactcggtggtcacaggaag
tagatggcagtgtagacgttgtatgctccaagtgttggaggaagtggtta
gatccctctcctccctgagcgtggtagggctgcctgagatgagtaagcca
ttgcaggcaggcagcagtggaagtgactaagtgctgcccgtggctatgtt
ttcctactctcacatacatctcctgtgaccttacccttccagcctcagcc
gctaatctgcgcgtgcgcgcgcgcgcgcacacacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_56482800_56483062
seq2: B6Ng01-090H02.b_53_314

seq1  TCTGTTCTTTCAGAGAGAAGGTTGTGACTTGGTGCTGGGCCTGCCTAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCTTTCAGAGAGAAGGTTGTGACTTGGTGCTGGGCCTGCCTAGAA  50

seq1  GCAGAGTGGGGGACAGCAGGGACAAGGTCAAGAGCCCCAGGGACGGGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTGGGGGACAGCAGGGACAAGGTCAAGAGCCCCAGGGACGGGGCA  100

seq1  GTTTCCAGACAGCAGAGGAGGAGGGAGAGAGAATGGGGTTCTTGCTGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCAGACAGCAGAGGAGGAGGGAGAGAGAATGGGGTTCTTGCTGGTG  150

seq1  CTGGGCCTGGGAAGACTAGCCCAGGGGATCCTGAAGGCATGGTGACAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCTGGGAAGACTAGCCCAGGGGATCCTGAAGGCATGGTGACAGTT  200

seq1  GGGGTGTGGTGTGGTAGGATCTTGGGTGATGGGAGGGTTGTTAGCCTGTC  250
      |||||||||||||||||||||||  |||||||||||||||   || |   
seq2  GGGGTGTGGTGTGGTAGGATCTTTAGTGATGGGAGGGTTG-CCGCTTCCA  249

seq1  ACTATTTAGGAAG  263
      | |||||||||||
seq2  ATTATTTAGGAAG  262

seq1: chr17_56646513_56647399
seq2: B6Ng01-090H02.g_70_954 (reverse)

seq1  TGTGTGTGCGCGCGCGCGCGCGCGCGCAGGTTTAGCGGCTGAGGCTGGAA  50
      ||||||||||||||||||||| |||||| | |||||||||||||||||||
seq2  TGTGTGTGCGCGCGCGCGCGCACGCGCA-GATTAGCGGCTGAGGCTGGAA  49

seq1  GGGTAAGGTCACAGGAGATGTATGTGAGAGTAGGAAAACATAGCCACGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAGGTCACAGGAGATGTATGTGAGAGTAGGAAAACATAGCCACGGG  99

seq1  CAGCACTTAGTCACTTCCACTGCTGCCTGCCTGCAATGGCTTACTCATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTTAGTCACTTCCACTGCTGCCTGCCTGCAATGGCTTACTCATCT  149

seq1  CAGGCAGCCCTACCACGCTCAGGGAGGAGAGGGATCTAACCCACTTCCTC  200
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CAGGCAGCCCTACCACGCTCAGGGAGGAGAGGGATCTAA-CCACTTCCTC  198

seq1  CAACACTTGGAGCATACAACGTCTACACTGCCATCTACTTCCTGTGACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACTTGGAGCATACAACGTCTACACTGCCATCTACTTCCTGTGACCA  248

seq1  CCGAGTTGACGCGCTCCCTCCTCTACCCACAACCTCCTTCAGACCAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTTGACGCGCTCCCTCCTCTACCCACAACCTCCTTCAGACCAACTG  298

seq1  CAGTCCTGTCTGCAGCCCACGCGGCTCTCCCGGGCCTGTCCCGCAGTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTGTCTGCAGCCCACGCGGCTCTCCCGGGCCTGTCCCGCAGTCCT  348

seq1  GCCTCCTTCTCTGCACGTGCACTCCAGCTACACAGGTTCAGTCTATCCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTTCTCTGCACGTGCACTCCAGCTACACAGGTTCAGTCTATCCGT  398

seq1  CCTTCCACCCTGCCACTCCCCAACTGCCAGGTCCTGTCCTGCCGCGGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCACCCTGCCACTCCCCAACTGCCAGGTCCTGTCCTGCCGCGGGAC  448

seq1  CTTTGCTCGGGGGTGTCACAGCTCCGCCACCCACCCCTGCCCAGACGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTCGGGGGTGTCACAGCTCCGCCACCCACCCCTGCCCAGACGTGA  498

seq1  GGTGTGGCTGGGCCACAGTGTCTCCATGCAGAATTTGGGGCAATGGGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGCTGGGCCACAGTGTCTCCATGCAGAATTTGGGGCAATGGGGAT  548

seq1  CATGGAGCGGGTTCTCGATGCTCTCGCACGCAGGGTTCCTTTTTTGAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGCGGGTTCTCGATGCTCTCGCACGCAGGGTTCCTTTTTTGAGAT  598

seq1  GGGGGAGGGGCGCCCACATTTCCTTTCTGACCCCCAAAGCCGCAGGGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGGGGCGCCCACATTTCCTTTCTGACCCCCAAAGCCGCAGGGAGA  648

seq1  GGCCCCCAGGAGTCTGCGCAGGCGCTCTGGTGATTCAATCGCAGCGCGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCCAGGAGTCTGCGCAGGCGCTCTGGTGATTCAATCGCAGCGCGGA  698

seq1  CCCACAGCCAATGGCTGTGTTTTGCAATGAGGTCATGCTCGGCTCCGCGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGCCAATGGCTGTGTTTTGCAATGAGGTCATGCTCGGCTCCGCGT  748

seq1  CTTGATTGGTCACTGTGAGGCCACAGACACGTCCTCCTGGGCGGGACTCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATTGGTCACTGTGAGGCCACAGACACGTCCTCCTGGGCGGGACTCG  798

seq1  CCGCTTGGCAGCCTTGGGCATCGGGGAACTCTGAGACCAGGACACCTGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTTGGCAGCCTTGGGCATCGGGGAACTCTGAGACCAGGACACCTGCC  848

seq1  TCGGGCTTACTGTATGCTCCAAGCTGGCCTTGAATTC  887
      |||||||||||||||||||||||||||||||||||||
seq2  TCGGGCTTACTGTATGCTCCAAGCTGGCCTTGAATTC  885