BAC Information

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BAC

Clone NameB6Ng01-091J24
Chromosome18 (Build37)17 (Build37)
Map Location 32,326,227 - 32,327,31558,617,994 - 58,618,119
singlet/doubletsingletsinglet
Overlap geneMap3k2
Upstream geneRit2, EG666130, Syt4, LOC383420, Slc25a46, Sap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710
Downstream geneErcc3, Bin1, Gypc, LOC100041160, LOC100041170, Tslp, Wdr36, Camk4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091J24.bB6Ng01-091J24.g
ACCDH903598DH903599
length1,091872
definitionDH903598|Mus musculus domesticus DNA, BAC clone: B6Ng01-091J24, 5' end.DH903599|Mus musculus domesticus DNA, BAC clone: B6Ng01-091J24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,326,227 - 32,327,315)(58,617,994 - 58,618,119)
sequence
gaattcattgttggtcaacaggtgtaaacaagatcatggaaattgtaaaa
tatccgtagctgctctattgaataaaatctgattttgtaattttttaaga
cttttggtgatggtttcaaattactggctgttaggaactcttaaagaaac
ttggcttcagaagaactggaagaattcaatgacagcctgttcttgtaata
agtacttagtaaagaagtttgtttaaatctgatgtagtcagtgttggttg
ggttgaagaactaagttgtatgttgggaggagtgatatatgtagctcact
ggttaaaaaaatgctttgagtgcacagggccctgggttcgagccttacca
cccaaaacaaaacaaaacaaaacaaattgtggttttgaactttactccat
attctatttcataataattgtataaataagcatttgtgaataaagaatga
actgatattgaggcatattaattacatttagaactggatctcatttttat
taagccagatataaatacatatgtaatatagaatcaaatttattttcaac
aacattagtagatgaatttttaaaggtttcataataagactaaccaagta
gcacattttttcattaaaaatatttaactcatgaaacagttttgaagact
ttttacctatatctttgtaagttaagatgatctctatatacagaaataaa
aagcttttctatttttcttaaaatgcttttgtagtatacctatatatcta
tgcacctatatgtaaatgcttcaaagaaacactaatatgattttggcttg
aagcctttgtatttattttgaatgttgggttgacagtgttcctcattgtg
gctaattgcatttgcattgtaattgaattgttgcttttgtgttatttaac
ttagactgttgttttattattattctaaaacttatatatatgtgcacaat
gcaagggcagatccctcggaagctggagttaacagccagttctttaccac
ctgatgtaggtgctagatcagctcaggttttctgcagaagtgggctttac
ttctaatagctgaagctgtgtggtagatgttcaaagcatgc
gaattctcctacgttcctccaccctttccagaagccatcaactgtgaaga
gctacacttgcattcttaacataatttttaagagttctttttgatggcat
tccatctgggctgttatttctggaagacaaaattaccaattacttctgaa
agacaaaaaccactggatcatctcattagatacagaaaaggcctttgaca
aaaaaaaaaaaaatccaataccccttcataataaaagtcctggagagatt
agggatacaaggaacatacctcaaggtgatttacatcaagcccacaggaa
atatcaacctaaatggagagaaactcaaaacaattccattaaaatcaaga
acaagacaaagttgtccactctctctatatctactcattatagtacttga
ggaataagacaaccgcaggagatcaaagagatgcagaaaggaagggaaga
agtcaaagtacctttatttgcaggtagtataagtttatacataagtgaca
ctgtaaaactccactgtgaaactcctacagctgagaaaggctttcagcaa
agtattgagatacaaaattaacacacaacttagtatccctccaatataca
aatgacaaatggactgaaaaagaagtcaaggaaacaatggctttcacaat
agcctcaaaaaattatcttgggataactcaaatcaagcaagtgaaagact
tgtatgaccaaaaaaaaacaaaaaactttaagacattaaataaagctatc
agaagatggaaagatctcccatgcttatgagtcagtaggattaatataga
aaagtggccttcataccaaaaaaaatctacagattcaaagcaatccctat
caaaattccaacacaatcttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_32326227_32327315
seq2: B6Ng01-091J24.b_49_1139

seq1  GAATTCATTGTTGGTCAACAGGTGTAAACAAGATCATGGAAATTGTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTTGGTCAACAGGTGTAAACAAGATCATGGAAATTGTAAAA  50

seq1  TATCCGTAGCTGCTCTATTGAATAAAATCTGATTTTGTAATTTTTTAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCGTAGCTGCTCTATTGAATAAAATCTGATTTTGTAATTTTTTAAGA  100

seq1  CTTTTGGTGATGGTTTCAAATTACTGGCTGTTAGGAACTCTTAAAGAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGTGATGGTTTCAAATTACTGGCTGTTAGGAACTCTTAAAGAAAC  150

seq1  TTGGCTTCAGAAGAACTGGAAGAATTCAATGACAGCCTGTTCTTGTAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTCAGAAGAACTGGAAGAATTCAATGACAGCCTGTTCTTGTAATA  200

seq1  AGTACTTAGTAAAGAAGTTTGTTTAAATCTGATGTAGTCAGTGTTGGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTAGTAAAGAAGTTTGTTTAAATCTGATGTAGTCAGTGTTGGTTG  250

seq1  GGTTGAAGAACTAAGTTGTATGTTGGGAGGAGTGATATATGTAGCTCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAAGAACTAAGTTGTATGTTGGGAGGAGTGATATATGTAGCTCACT  300

seq1  GGTTAAAAAAATGCTTTGAGTGCACAGGGCCCTGGGTTCGAGCCTTACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAAAAAAATGCTTTGAGTGCACAGGGCCCTGGGTTCGAGCCTTACCA  350

seq1  CCCAAAACAAAACAAAACAAAACAAATTGTGGTTTTGAACTTTACTCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAACAAAACAAAACAAAACAAATTGTGGTTTTGAACTTTACTCCAT  400

seq1  ATTCTATTTCATAATAATTGTATAAATAAGCATTTGTGAATAAAGAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATTTCATAATAATTGTATAAATAAGCATTTGTGAATAAAGAATGA  450

seq1  ACTGATATTGAGGCATATTAATTACATTTAGAACTGGATCTCATTTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATATTGAGGCATATTAATTACATTTAGAACTGGATCTCATTTTTAT  500

seq1  TAAGCCAGATATAAATACATATGTAATATAGAATCAAATTTATTTTCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCAGATATAAATACATATGTAATATAGAATCAAATTTATTTTCAAC  550

seq1  AACATTAGTAGATGAATTTTTAAAGGTTTCATAATAAGACTAACCAAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTAGTAGATGAATTTTTAAAGGTTTCATAATAAGACTAACCAAGTA  600

seq1  GCACATTTTTTCATTAAAAATATTTAACTCATGAAACAGTTTTGAAGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATTTTTTCATTAAAAATATTTAACTCATGAAACAGTTTTGAAGACT  650

seq1  TTTTACCTATATCTTTGTAAGTTAAGATGATCTCTATATACAGAAATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCTATATCTTTGTAAGTTAAGATGATCTCTATATACAGAAATAAA  700

seq1  AAGCTTTTCTATTTTTCTTAAAATGCTTTTGTAGTATACCTATATATCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTTCTATTTTTCTTAAAATGCTTTTGTAGTATACCTATATATCTA  750

seq1  TGCACCTATATGTAAATGCTTCAAAGAAACACTAATATGATTTTGGCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCTATATGTAAATGCTTCAAAGAAACACTAATATGATTTTGGCTTG  800

seq1  AAGCCTTTGTATTTATTTTGAATGTT-GGTTGACAGTGTTCCTCATTGTG  849
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAGCCTTTGTATTTATTTTGAATGTTGGGTTGACAGTGTTCCTCATTGTG  850

seq1  GCTAATTGCATTTGCATTGTAATTGAATTGTTGCTTTTGTTGTTATTTAA  899
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GCTAATTGCATTTGCATTGTAATTGAATTGTTGCTTTTG-TGTTATTTAA  899

seq1  CTTAGACTGTTGTTTTATTATTATTCTAAAACTTATATATATGTGCACAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGACTGTTGTTTTATTATTATTCTAAAACTTATATATATGTGCACAA  949

seq1  TGC-AGGGCAGATCCCTCGGAAGCTGGAGTT-ACAGCCAGTTCTGTACCA  997
      ||| ||||||||||||||||||||||||||| |||||||||||| |||||
seq2  TGCAAGGGCAGATCCCTCGGAAGCTGGAGTTAACAGCCAGTTCTTTACCA  999

seq1  CCTGATGTAGGTGCTAGAATCAGCTCAGGTTCTCTGCAAGAGTGGGC-TT  1046
      ||||||||||||||||| ||||||||||||| ||||||  ||||||| ||
seq2  CCTGATGTAGGTGCTAG-ATCAGCTCAGGTTTTCTGCAGAAGTGGGCTTT  1048

seq1  ACTCTTAATAGCTG-AGCTGTGT-GTAGATGGTTCAAAGCCATGC  1089
      |||  ||||||||| |||||||| |||||| |||||||| |||||
seq2  ACTTCTAATAGCTGAAGCTGTGTGGTAGAT-GTTCAAAG-CATGC  1091

seq1: chr17_58617994_58618119
seq2: B6Ng01-091J24.g_816_939 (reverse)

seq1  TGAAGAATTGAGTTGGAATTTTGATGGGGATTGCATTGAATCTGTAGATT  50
      ||||| |||| |||||||||||||| |||||||| |||||||||||||||
seq2  TGAAG-ATTGTGTTGGAATTTTGATAGGGATTGCTTTGAATCTGTAGATT  49

seq1  GCTTTTGGCAAGATAGCCATTTTTACAATGTTGATCCTGCCAATCCATGA  100
        |||||| | ||  |||| |||| | || || ||||| |  |  ||| |
seq2  TTTTTTGGTATGAAGGCCACTTTT-CTATATTAATCCTACTGACTCATAA  98

seq1  GCATGGGAGATCTTTCCATCTTCTGA  126
      ||||||||||||||||||||||||||
seq2  GCATGGGAGATCTTTCCATCTTCTGA  124