BAC Information

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BAC

Clone NameB6Ng01-092D04
Chromosome17 (Build37)
Map Location 85,028,241 - 85,128,461
singlet/doubletdoublet
Overlap geneDync2li1, Abcg5, Abcg8, Lrpprc
Upstream geneKcng3, Mta3, Haao, Zfp36l2, Thada, Plekhh2
Downstream geneLOC668848, 1110020A21Rik, Ppm1b, Slc3a1, Prepl, LOC100043901, 1700106N22Rik, EG668850, LOC383282, LOC100043902, Six3, LOC100043717, Six2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092D04.bB6Ng01-092D04.g
ACCDH904024DH904025
length4721,046
definitionDH904024|Mus musculus domesticus DNA, BAC clone: B6Ng01-092D04, 5' end.DH904025|Mus musculus domesticus DNA, BAC clone: B6Ng01-092D04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,127,984 - 85,128,461)(85,028,241 - 85,029,283)
sequence
acacagcatagtagtttgctggctgagtgtgaagctgtcaccatgtgtcc
cacgcacaggcagctgtccgttttggaaatccccttcacttactgtttca
gctgcatttggtttgattgttctgagttctacattgagtattctacagtc
tggcgtttgtttgtttgtttgtttgtttaagctaatgatatgaaacaatt
agtaagtttttgatgtccttgaaacctccaaaattgattttttttcttaa
tgaatttatgggttttaaaaaactgttttgttttagttattttcaatact
caaattatgcagtccttggccagcaggagcctcctccttttagctcctgt
atcatctgacatacccagggttcaggctgatggcacttgattcctaccct
agacctgaggcctgcatttgataagggagtggtacttagataacagacct
gcagggggagggggggttggag
gaattcctgcgtgtgaggaggggctgctagcaacattgtccacaaaggat
caaggcttgtgagcctccagacgctacagcctgtgtagcatcgggctggc
ttctctttggggttaaagttactattcattctctgaccgtcttgcttaca
catgaggccactgacaggcagcttacagaaactaagttctgaaccggtga
ggctgcctgagaaaacctctttgtttcagcacctcctcagaattgtctcc
agaacaccagacatccccatttggggttttcatcttcattgttattaaaa
atgatatttactggtataaatgattatataacaagagacgagttggagtg
gagaaatggctgaagaactccggctactcttccagaggacctggggttga
gttccagcatccacatggcagcttataactagctgtttctccagtctcaa
gggatcagaagccctcttgtgctctcctcaggcaccaagcatacatgtgc
acatacacatataggcaaaactcccatacacataaaaataaataaataaa
taaataaataagagattaaaaaagtaaaaatatgtgtttaattcactaat
gtgaattaaaataagcagggtgaaaattttatatataacctgttctgttg
tattaatgtgttatatactaattagtatttaaaagataatttatggatgg
taaatgttaaatcattgtattttcattttatttttaatttctgttctctc
caaatttcttattggctcattcactgcagtttttaatttaaatcttgcac
acacaagcatacatgtcacaaacacacagacacatatatgtcacaacaca
cacaagcatacatgtcacaacacacagacacatataagtcacaacacaca
caagcataacatgtcacaacacacagacacatataagtcacaacacacac
aagcatacatgtcattctgcgcacgcccgtctcgccagcaagaacgacgt
gcaacaggatccttctgcacacattttattggggagaacttgattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_85127984_85128461
seq2: B6Ng01-092D04.b_47_524 (reverse)

seq1  CTCCAACCCCCCCTCCCCCTGCAGGTCTGTTATCTAAGTACCACTCCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACCCCCCCTCCCCCTGCAGGTCTGTTATCTAAGTACCACTCCCTT  50

seq1  ATCAAATGCAGGCCTCAGGTCTAGGGTAGGAATCAAGTGCCATCAGCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATGCAGGCCTCAGGTCTAGGGTAGGAATCAAGTGCCATCAGCCTG  100

seq1  AACCCTGGGTATGTCAGATGATACAGGAGCTAAAAGGAGGAGGCTCCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGGGTATGTCAGATGATACAGGAGCTAAAAGGAGGAGGCTCCTGC  150

seq1  TGGCCAAGGACTGCATAATTTGAGTATTGAAAATAACTAAAACAAAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAAGGACTGCATAATTTGAGTATTGAAAATAACTAAAACAAAACAG  200

seq1  TTTTTTAAAACCCATAAATTCATTAAGAAAAAAAATCAATTTTGGAGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAAACCCATAAATTCATTAAGAAAAAAAATCAATTTTGGAGGTT  250

seq1  TCAAGGACATCAAAAACTTACTAATTGTTTCATATCATTAGCTTAAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGACATCAAAAACTTACTAATTGTTTCATATCATTAGCTTAAACAA  300

seq1  ACAAACAAACAAACAAACGCCAGACTGTAGAATACTCAATGTAGAACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACAAACAAACGCCAGACTGTAGAATACTCAATGTAGAACTCA  350

seq1  GAACAATCAAACCAAATGCAGCTGAAACAGTAAGTGAAGGGGATTTCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATCAAACCAAATGCAGCTGAAACAGTAAGTGAAGGGGATTTCCAA  400

seq1  AACGGACAGCTGCCTGTGCGTGGGACACATGGTGACAGCTTCACACTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGACAGCTGCCTGTGCGTGGGACACATGGTGACAGCTTCACACTCAG  450

seq1  CCAGCAAACTACTATGCTGTGTGAATTC  478
      ||||||||||||||||||||||||||||
seq2  CCAGCAAACTACTATGCTGTGTGAATTC  478

seq1: chr17_85028241_85029283
seq2: B6Ng01-092D04.g_68_1113

seq1  GAATTCCTGCGTGTGAGGAGGGGCTGCTAGCAACATTGTCCACAAAGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCGTGTGAGGAGGGGCTGCTAGCAACATTGTCCACAAAGGAT  50

seq1  CAAGGCTTGTGAGCCTCCAGACGCTACAGCCTGTGTAGCATCGGGCTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTTGTGAGCCTCCAGACGCTACAGCCTGTGTAGCATCGGGCTGGC  100

seq1  TTCTCTTTGGGGTTAAAGTTACTATTCATTCTCTGACCGTCTTGCTTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTGGGGTTAAAGTTACTATTCATTCTCTGACCGTCTTGCTTACA  150

seq1  CATGAGGCCACTGACAGGCAGCTTACAGAAACTAAGTTCTGAACCGGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGGCCACTGACAGGCAGCTTACAGAAACTAAGTTCTGAACCGGTGA  200

seq1  GGCTGCCTGAGAAAACCTCTTTGTTTCAGCACCTCCTCAGAATTGTCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCCTGAGAAAACCTCTTTGTTTCAGCACCTCCTCAGAATTGTCTCC  250

seq1  AGAACACCAGACATCCCCATTTGGGGTTTTCATCTTCATTGTTATTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACCAGACATCCCCATTTGGGGTTTTCATCTTCATTGTTATTAAAA  300

seq1  ATGATATTTACTGGTATAAATGATTATATAACAAGAGACGAGTTGGAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATTTACTGGTATAAATGATTATATAACAAGAGACGAGTTGGAGTG  350

seq1  GAGAAATGGCTGAAGAACTCCGGCTACTCTTCCAGAGGACCTGGGGTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATGGCTGAAGAACTCCGGCTACTCTTCCAGAGGACCTGGGGTTGA  400

seq1  GTTCCAGCATCCACATGGCAGCTTATAACTAGCTGTTTCTCCAGTCTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGCATCCACATGGCAGCTTATAACTAGCTGTTTCTCCAGTCTCAA  450

seq1  GGGATCAGAAGCCCTCTTGTGCTCTCCTCAGGCACCAAGCATACATGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCAGAAGCCCTCTTGTGCTCTCCTCAGGCACCAAGCATACATGTGC  500

seq1  ACATACACATATAGGCAAAACTCCCATACACATAAAAATAAATAAATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACACATATAGGCAAAACTCCCATACACATAAAAATAAATAAATAAA  550

seq1  TAAATAAATAAGAGATTAAAAAAGTAAAAATATGTGTTTAATTCACTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAAGAGATTAAAAAAGTAAAAATATGTGTTTAATTCACTAAT  600

seq1  GTGAATTAAAATAAGCAGGGTGAAAATTTTATATATAACCTGTTCTGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTAAAATAAGCAGGGTGAAAATTTTATATATAACCTGTTCTGTTG  650

seq1  TATTAATGTGTTATATACTAATTAGTATTTAAAAGATAATTTATGGATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATGTGTTATATACTAATTAGTATTTAAAAGATAATTTATGGATGG  700

seq1  TAAATGTTAAATCATTGTATTTTCATTTTATTTTTAATTTCTGTTCTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTTAAATCATTGTATTTTCATTTTATTTTTAATTTCTGTTCTCTC  750

seq1  CAAATTTCTTATTGGCTCATTCACTGCAGTTTTTAATTTAAATCTTGCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTCTTATTGGCTCATTCACTGCAGTTTTTAATTTAAATCTTGCAC  800

seq1  ACACAAGCATACATGTCAC-AACACACAGACACATATATGTCACAACACA  849
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACACAAGCATACATGTCACAAACACACAGACACATATATGTCACAACACA  850

seq1  CACAAGCATACATGTCACAACACACAGACACATATAAGTCACAACACACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCATACATGTCACAACACACAGACACATATAAGTCACAACACACA  900

seq1  CAAGCAT-ACATGTCACAACACACAGACACATATAAGTCACAACACACAC  948
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATAACATGTCACAACACACAGACACATATAAGTCACAACACACAC  950

seq1  AAGCATACATGTCATTCTTGCGCACGCCCGTCTCGCCAGCAAGAACGACG  998
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAGCATACATGTCATTC-TGCGCACGCCCGTCTCGCCAGCAAGAACGACG  999

seq1  TGCAACAGGATCCTTCTGCACACA-TTTATT-GGGAGAACTTGATTG  1043
      |||||||||||||||||||||||| |||||| |||||||||||||||
seq2  TGCAACAGGATCCTTCTGCACACATTTTATTGGGGAGAACTTGATTG  1046