BAC Information

Click to search

BAC

Clone NameB6Ng01-092G01
Chromosome17 (Build37)
Map Location 55,386,246 - 55,387,090
singlet/doubletsinglet
Overlap geneLOC100043485
Upstream geneSlc5a7, LOC668529, 1700025K24Rik, Trp53-ps, LOC240117, EG629178, LOC100043833
Downstream geneLOC677496, St6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092G01.bB6Ng01-092G01.g
ACCDH904154DH904155
length1,1321,142
definitionDH904154|Mus musculus domesticus DNA, BAC clone: B6Ng01-092G01, 5' end.DH904155|Mus musculus domesticus DNA, BAC clone: B6Ng01-092G01, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctagaaggaaaatgccaacataaggatggtacctacaccaaagaa
tagacaagatattaatcatttcacaacaaagccaaaaggagagaaccaca
tgcacattatgccacctacaaaaaccaacaagaactaacaatcatccgtc
tttattatctctcaatattaatggactcaactccccaataaaaagacgta
agttaacagactggtactcaaacagaatccagcattttgctgcatacaag
aaacacacctcaataatagagatgacactacctcagagtaaaagactgga
aaattttcttccaagcaaatgaccccaagaaacaagctggagttgccatc
ctaatatccagttaaacagactttcaaacaaaatttatcaagcgagatga
ggaaagacacttcatattgatcaaaggaaaaatccaccaagaaaaagtct
caattctgaacatctatggctcaaatgcaagagcacacacattcataaaa
gaaactttactaaagctcaaaacacacatggaaccccacacaataatagt
gggagacttcaacatcccattctcacttatggacaggtcattgaaacaaa
ataatcagagacacagtgaaactaacataggttatgaaccacctggattt
aacatatacctacagaacatttcagcccaaaacaaaagaatccaccttct
tctcagcacctcgtggttccttcttcaaaatagactatataattggacac
aaagcaagcctcaacctatacaaaaagatttaaataatcccatgcagtcc
tccatcggggagcattcgtcatgctctcatgatggcttggctctgctcag
cccagcagcctcttgggccatctggagcctcagagcctctttagtatgga
aagtccggctgcgagcagaccctctggatggcccctttctcagaagcttt
gctatttgcagagctgggcatgctcctcattaacatctgtctgtcagcat
agtccgacatcatttcactggtggaaggactcagctccaaatctgtatag
aaaaaacactggatcccagtctttcatgtttcagacaccaggagtgcttg
ctctgctccagtgggcctctagccagatgtcc
gaattcctgatctttccaagactttgatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctatttggtcaggatggatgattgct
ttaatgtgttcttggactcagttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaagctctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctattact
ttaggtgatatgggactgtttagaaggtcaacttgatcctgattcagctt
tggtacctggtatctgtccagaaatttgtccacttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtttcccttttcatttctgatttttttaat
taggattttgtacctgtgccctctagtgagtctagctaagggtttatcta
ttttgttgattttctcaaagaacgaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttccctgccttctctctcttgggtgaatttgcttcctttttttctagagc
ttttagatgtgttgtcagctgctagtgtgtgctctctccagttcttcttg
gagcactcagagctatgagtttccctctagaatgctttattgtgtgccat
aggtttgggtacgatgtgcttcatttcatatacttgaaaagtcttaatct
ttcttatctcttgacaaggatcatgagaagaggtttccattcccccggaa
ggtgggaattccatatgattgtggtatggagactagggctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_55386246_55387090
seq2: B6Ng01-092G01.b_345_1176

seq1  AAATTTTCTTCCAAGCAAATGACCCCAAGAAACAAGCTGGAGTTGCCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCTTCCAAGCAAATGACCCCAAGAAACAAGCTGGAGTTGCCATC  50

seq1  CTAATATCCAGTTAAACAGACTTTCAAACAAAATTTATCAAGCGAGATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATCCAGTTAAACAGACTTTCAAACAAAATTTATCAAGCGAGATGA  100

seq1  GGAAAGACACTTCATATTGATCAAAGGAAAAATCCACCAAGAAAAAGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGACACTTCATATTGATCAAAGGAAAAATCCACCAAGAAAAAGTCT  150

seq1  CAATTCTGAACATCTATGGCTCAAATGCAAGAGCACACACATTCATAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTGAACATCTATGGCTCAAATGCAAGAGCACACACATTCATAAAA  200

seq1  GAAACTTTACTAAAGCTCAAAACACACATGGAACCCCACACAATAATAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTTACTAAAGCTCAAAACACACATGGAACCCCACACAATAATAGT  250

seq1  GGGAGACTTCAACATCCCATTCTCACTTATGGACAGGTCATTGAAACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACTTCAACATCCCATTCTCACTTATGGACAGGTCATTGAAACAAA  300

seq1  ATAATCAGAGACACAGTGAAACTAACATAGGTTATGAACCACCTGGATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCAGAGACACAGTGAAACTAACATAGGTTATGAACCACCTGGATTT  350

seq1  AACATATACCTACAGAACATTTCAGCCCAAAACAAAAGAATCCACCTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATACCTACAGAACATTTCAGCCCAAAACAAAAGAATCCACCTTCT  400

seq1  TCTCAGCACCTCGTGGTTCCTTCTTCAAAATAGACTATATAATTGGACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCACCTCGTGGTTCCTTCTTCAAAATAGACTATATAATTGGACAC  450

seq1  AAAGCAAGCCTCAACCTATACAAAAAGATTTAAATAATCCCATGCAGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAGCCTCAACCTATACAAAAAGATTTAAATAATCCCATGCAGTCC  500

seq1  TCCATCGGGGAGCATTCGTCATGCTCTCATGATGGCTTGGCTCTGCTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCGGGGAGCATTCGTCATGCTCTCATGATGGCTTGGCTCTGCTCAG  550

seq1  CCCAGCAGCCTCTTGGGCCATCTGGAGCCTCAGAGCCTCTTTAGTATGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAGCCTCTTGGGCCATCTGGAGCCTCAGAGCCTCTTTAGTATGGA  600

seq1  AAGTCCGGCTGCGAGCAGACCCTCTGGATGGCCCCTTTCTCAGAAGCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCGGCTGCGAGCAGACCCTCTGGATGGCCCCTTTCTCAGAAGCTTT  650

seq1  GCTATTTTGCAGAAGCTGGGCAATGCTCCTCATTAACATCTGTCTGTCAG  700
      |||| ||||||| |||||||| ||||||||||||||||||||||||||||
seq2  GCTA-TTTGCAG-AGCTGGGC-ATGCTCCTCATTAACATCTGTCTGTCAG  697

seq1  CATAGTCCGACATCATTTCACTGGTGGAAGGGACTCAGCTCCAAATTCTG  750
      ||||||||||||||||||||||||||||| ||||||||||||||| ||||
seq2  CATAGTCCGACATCATTTCACTGGTGGAA-GGACTCAGCTCCAAA-TCTG  745

seq1  TATAGAAAAAACACCTGGATCCCAGTCTTTCAATGGTTTCAAGACAACCA  800
      ||||||||||||| ||||||||||||||||||   ||||| |||| ||||
seq2  TATAGAAAAAACA-CTGGATCCCAGTCTTTCA--TGTTTC-AGAC-ACCA  790

seq1  GAAGTGCTTGCTCTTGCTCCCAGTGGGCCTCTAGGCAAGATGTCC  845
      | ||||||||||| |||| |||||||||||||| || ||||||||
seq2  GGAGTGCTTGCTC-TGCT-CCAGTGGGCCTCTA-GCCAGATGTCC  832