BAC Information

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BAC

Clone NameB6Ng01-092G15
Chromosome17 (Build37)
Map Location 47,907,739 - 48,113,191
singlet/doubletdoublet
Overlap geneLOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250
Upstream gene2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110, Trerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc
Downstream gene1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419, Trem1, Trem3, Treml4, Treml2, B430306N03Rik, Trem2, Treml1, Nfya, AI314976, Apobec2, Bzrpl1, Unc5cl, Lrfn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092G15.bB6Ng01-092G15.g
ACCDH904182DH904183
length519983
definitionDH904182|Mus musculus domesticus DNA, BAC clone: B6Ng01-092G15, 5' end.DH904183|Mus musculus domesticus DNA, BAC clone: B6Ng01-092G15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,112,667 - 48,113,191)(47,907,739 - 47,908,729)
sequence
ataaaacgttgttctttaatggtctctctctctctttttttttcctttcc
ctctgcgaaggagggagctaactcggtcgggggcagggcagggctgggct
ctccacaagtgacaccgaattcccagtctggactgggcgggcgcttgaaa
gcagctaaattagcaaaacagaagtcaaccgtcgattgcttctacggagg
attaagtgtgataaatggagggtttgttcgctctccggtccagatgttgt
gtctaagtgaagggtttttatggtttttttttttttttcattcttggctc
agatcccatatatattttggatactgctgggagtatataatatcactgga
aaatgatgtggtctggtaaccttttaaataacatttccgccctcctctgt
tttctaatagtttgtttttctttccatgtttgccttttattgggggaaat
ttttttttttggaaattaatgaggctcaagtttggagaccaaaatatgag
agggatgtgggtgggggat
gaattcctgaacctcctccctctgcttcccaagcgctgggattccatcac
cccatctgatcatctgatcacatgttgaagtaaggacacaaagaccctaa
cctaggtctaaacttcagttgttggtagggaactgggagctgactctcac
atcagtccctctgtgccagctacatgtctattcggagctgccatttgttt
gcagataggaaaactgaggctctgagaggttgtgtccctgcctgccatca
caggactgctaagagggaaagctagatgtgacgtcagctttgaaggatcc
agagcacatgttgattcctcaggacctcagtgctcaagtgaaatcacact
tcatctgggtctggctgtcagaagtacagttcgaggggtggtcctcggtg
gccctctcaggacgacagtctgatggggagactgagtggagagaagctct
gggggagggctgcatcctgctccgatctctttcctacacacactcaaagc
agacatccaggcagcgcatgcatgtgcgcttgggaggcggctgggtttgt
ggcttcaggggtagagtgtcctgtcacctccttgcatgatgcacatgatg
acatgtgaccttaggcatgtcgtcggtccctctgtgcctcttctgtagaa
tggggacgtagtagtacctgtcacaggctggtaggattgctaggaggatt
aaatcagcagtatagggccagtcaaatgagctgtgcaccatccgctctca
gtgaaaagatgacggtggccagtttatgccccggggctgcctcgctgtgt
ctgttgagggctggtttctcctttcctttctcttcccgcaacatgtcctg
tttgctttttttgttgtttgttcattacttgcagagcctggctgtttcat
taagaagctgttctgaaccacttagtggatcagaggaagttggtcctcac
ggtatagccggagtggggaggagggcacagcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_48112667_48113191
seq2: B6Ng01-092G15.b_43_567 (reverse)

seq1  ATCCCCCACCCACATCCCTCTCATATTTTGGTCTCCAAACTTGAGCCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCCACCCACATCCCTCTCATATTTTGGTCTCCAAACTTGAGCCTCA  50

seq1  TTAATTTCCAAAAAAAAAAATTTCCCCCAATAAAAGGCAAACATGGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCCAAAAAAAAAAATTTCCCCCAATAAAAGGCAAACATGGAAAG  100

seq1  AAAAACAAACTATTAGAAAACAGAGGAGGGCGGAAATGTTATTTAAAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAACTATTAGAAAACAGAGGAGGGCGGAAATGTTATTTAAAAGG  150

seq1  TTACCAGACCACATCATTTTCCAGTGATATTATATACTCCCAGCAGTATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAGACCACATCATTTTCCAGTGATATTATATACTCCCAGCAGTATC  200

seq1  CAAAATATATATGGGATCTGAGCCAAGAATGAAAAAAAAAAAAAAACCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATATATGGGATCTGAGCCAAGAATGAAAAAAAAAAAAAAACCAT  250

seq1  AAAAACCCTTCACTTAGACACAACATCTGGACCGGAGAGCGAACAAACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCCTTCACTTAGACACAACATCTGGACCGGAGAGCGAACAAACCC  300

seq1  TCCATTTATCACACTTAATCCTCCGTAGAAGCAATCGACGGTTGACTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTATCACACTTAATCCTCCGTAGAAGCAATCGACGGTTGACTTCT  350

seq1  GTTTTGCTAATTTAGCTGCTTTCAAGCGCCCGCCCAGTCCAGACTGGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCTAATTTAGCTGCTTTCAAGCGCCCGCCCAGTCCAGACTGGGAA  400

seq1  TTCGGTGTCACTTGTGGAGAGCCCAGCCCTGCCCTGCCCCCGACCGAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGTGTCACTTGTGGAGAGCCCAGCCCTGCCCTGCCCCCGACCGAGTT  450

seq1  AGCTCCCTCCTTCGCAGAGGGAAAGGAAAAAAAAAGAGAGAGAGAGACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCTCCTTCGCAGAGGGAAAGGAAAAAAAAAGAGAGAGAGAGACCA  500

seq1  TTAAAGAACAACGTTTTATGAATTC  525
      |||||||||||||||||||||||||
seq2  TTAAAGAACAACGTTTTATGAATTC  525

seq1: chr17_47907739_47908729
seq2: B6Ng01-092G15.g_69_1051

seq1  GAATTCCTGAACCTCCTCCCTCTGCTTCCCAAGCGCTGGGATTCCATCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAACCTCCTCCCTCTGCTTCCCAAGCGCTGGGATTCCATCAC  50

seq1  CCCATCTGATCATCTGATCACATGTTGAAGTAAGGACACAAAGACCCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTGATCATCTGATCACATGTTGAAGTAAGGACACAAAGACCCTAA  100

seq1  CCTAGGTCTAAACTTCAGTTGTTGGTAGGGAACTGGGAGCTGACTCTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGTCTAAACTTCAGTTGTTGGTAGGGAACTGGGAGCTGACTCTCAC  150

seq1  ATCAGTCCCTCTGTGCCAGCTACATGTCTATTCGGAGCTGCCATTTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCCCTCTGTGCCAGCTACATGTCTATTCGGAGCTGCCATTTGTTT  200

seq1  GCAGATAGGAAAACTGAGGCTCTGAGAGGTTGTGTCCCTGCCTGCCATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATAGGAAAACTGAGGCTCTGAGAGGTTGTGTCCCTGCCTGCCATCA  250

seq1  CAGGACTGCTAAGAGGGAAAGCTAGATGTGACGTCAGCTTTGAAGGATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTGCTAAGAGGGAAAGCTAGATGTGACGTCAGCTTTGAAGGATCC  300

seq1  AGAGCACATGTTGATTCCTCAGGACCTCAGTGCTCAAGTGAAATCACACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACATGTTGATTCCTCAGGACCTCAGTGCTCAAGTGAAATCACACT  350

seq1  TCATCTGGGTCTGGCTGTCAGAAGTACAGTTCGAGGGGTGGTCCTCGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGGGTCTGGCTGTCAGAAGTACAGTTCGAGGGGTGGTCCTCGGTG  400

seq1  GCCCTCTCAGGACGACAGTCTGATGGGGAGACTGAGTGGAGAGAAGCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTCAGGACGACAGTCTGATGGGGAGACTGAGTGGAGAGAAGCTCT  450

seq1  GGGGGAGGGCTGCATCCTGCTCCGATCTCTTTCCTACACACACTCAAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGGGCTGCATCCTGCTCCGATCTCTTTCCTACACACACTCAAAGC  500

seq1  AGACATCCAGGCAGCGCATGCATGTGCGCTTGGGAGGCGGCTGGGTTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCCAGGCAGCGCATGCATGTGCGCTTGGGAGGCGGCTGGGTTTGT  550

seq1  GGCTTCAGGGGTAGAGTGTCCTGTCACCTCCTTGCATGATGCACATGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCAGGGGTAGAGTGTCCTGTCACCTCCTTGCATGATGCACATGATG  600

seq1  ACATGTGACCTTAGGCATGTCGTCGGTCCCTCTGTGCCTCTTCTGTAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGACCTTAGGCATGTCGTCGGTCCCTCTGTGCCTCTTCTGTAGAA  650

seq1  TGGGGACGTAGTAGTACCTGTCACAGGCTGGTAGGATTGCTAGGAGGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACGTAGTAGTACCTGTCACAGGCTGGTAGGATTGCTAGGAGGATT  700

seq1  AAATCAGCAGTATAGGGCCAGTCAAATGAGCTGTGCACCATCCGCTCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGCAGTATAGGGCCAGTCAAATGAGCTGTGCACCATCCGCTCTCA  750

seq1  GTGAAAAGATGACGGTGGCCAGTTTATGCCCCGGGGCTGCCTCGCTGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAGATGACGGTGGCCAGTTTATGCCCCGGGGCTGCCTCGCTGTGT  800

seq1  CTGTTGAGGGCTGGTTTCTCC-TTCCTTTCTCTTCCCGCAACATGTCCTG  849
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTGTTGAGGGCTGGTTTCTCCTTTCCTTTCTCTTCCCGCAACATGTCCTG  850

seq1  TTTGCTTATTTGTTTGTTTGTTCATTACCTGGCAGAGCCTGGCTGTTGCA  899
      ||||||| |||  |||||||||||||| || |||||||||||||||| ||
seq2  TTTGCTTTTTTTGTTGTTTGTTCATTA-CTTGCAGAGCCTGGCTGTTTCA  899

seq1  GTTAAGAGGCTGTTTCTGAAACACTTAGATGGATCAGAGGAAGTTGGTTC  949
       |||||| |||| ||||||| ||||||| |||||||||||||||||| ||
seq2  -TTAAGAAGCTG-TTCTGAACCACTTAG-TGGATCAGAGGAAGTTGG-TC  945

seq1  CTCACGGCTATAAGCCGGCAGTGGGGAGGAGGGCACAAGCAG  991
      ||||||| ||| |||||| ||||||||||||||||| |||||
seq2  CTCACGG-TAT-AGCCGG-AGTGGGGAGGAGGGCAC-AGCAG  983