BAC Information

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BAC

Clone NameB6Ng01-092N05
Chromosome17 (Build37)
Map Location 90,618,125 - 90,754,005
singlet/doubletdoublet
Overlap geneNrxn1
Upstream geneLOC100043904, LOC100043906
Downstream geneEG668871, LOC668872, LOC627235
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092N05.bB6Ng01-092N05.g
ACCDH904479DH904480
length1,0151,147
definitionDH904479|Mus musculus domesticus DNA, BAC clone: B6Ng01-092N05, 5' end.DH904480|Mus musculus domesticus DNA, BAC clone: B6Ng01-092N05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,618,125 - 90,619,026)(90,752,858 - 90,754,005)
sequence
gaattccagccccacacaacacttcgtacagaatcagcaaggctctatta
tccacagaatggaaagtaataattcccacagccagacagatctatattta
taagtatagatcacacaaacacatctatacttataagtatcaagcacaac
agttttcagaagagaatatgggtattttcaaggataaatgatgaatatat
ttgctctatttcaattttcataagccaatatactgtcttaaaagggtgtc
aagaaatagttttcacgtatcttttagctacagcatattttagaatgcta
ctctaccaatttccacgagtaaaattaatttataatatatgctgtggtct
aagttgacacacgttcatttatctatacataagggtatatttttgacaaa
taaaataaagaaaaacaggagtacacgagaacagaggcagacacaaaaga
ggaaacacaaaaataccttcgagaattaaaggaaaacacaaccaaacagg
taaaggaattgaacaaaaacatccaggaccaaaaatgaaaatagacacaa
agaaatcacaaatgcagacataattggagatagaaaacctaggaaagaga
tcaggagtcataggttcaagcattaccaacaaaatacaaaagatagaaga
gagaatctcaggtgcagaagataacatagaaaacattgacacaacagtca
aagaaactggaaaaatcaaaaagctcctaacagaaaacatccaggaaatc
cagaacacaataagaagaccaaacctatgaataataggtatagaaaagag
aaaatatacccaacttaagggccaataaatatatcaacaaaattatagaa
gaaaacttccctaaactaaagaaagagaggcccatatatatacaagaagc
caacagaactccaaatagactgaatcagaaaaaattcttcccatcacata
ataatcaaaacaccaaatgcacaaaacaaggaaaaaatagtaaagttgta
aggaaaactgtcaag
gaattccctctgtagaccaggcctgcctggcactcagagttccatgtgcc
tctgcctcccgagagcagggattaaagctgtgcacagccagaaaggaggg
ttctttatcagcatcaaccaggagttgcctcctgaaaaccagctgaagag
cttgtctagccagtacagttcattcctacggagggaatgctctatgacca
ctggagaacatattataactaggtttctatggagacagtttaaaggtgga
cttttcccatcaaggaaaataattttcgccttggacctagtccattaaaa
aagcctttctgcctattgaaaatgagaaattcaagtttggtagacaaagc
ttatgctttggtgaaaaaaataactatttaactgactactacttattggt
ctttgaaaacagatctaaatattcttgaaaattattttgagttgtactta
tcacatatcaatttctcactctgaagcacatgtgtgtagtcctggcttct
ctcctgccccccaccaatcagcacactgatatttccactgcctactcatt
tccacatggatatctcagatgcagctcaaacttagttcattagaaaccaa
ccccagcatcccgcagctgaatgtctggtgttacatcactgacaaaactg
tgctggattcactgtgtgtttgcacttactgcctgtcagttcttgccaac
tcccatgcatttttctgctagcactgtccaattgaaatacggtgtaagcc
atatatgaaacgttacattatctactagttataatacagatggaaaaaca
aagataaatttgattttaatagttaagtttagtatctcttaacctataca
taagttattattatcttaaaatatggccatataaattattacctacacct
ctcaattcagaatctaagatttttgtcacaaattctttgttttgtaaagt
ctgcagttatataggttcactgacttatttacactatgcattattaaaat
tcttcataattgaatactgtatcaatgaaaaatttattcaccaggtaaat
tgaaattacatacaccttcagcattaggtttctgaatacaggttagcttt
gtttcgaatgccatgcactacttactatggactggaacatatagtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_90618125_90619026
seq2: B6Ng01-092N05.b_50_951

seq1  GAATTCCAGCCCCACACAACACTTCGTACAGAATCAGCAAGGCTCTATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCCCACACAACACTTCGTACAGAATCAGCAAGGCTCTATTA  50

seq1  TCCACAGAATGGAAAGTAATAATTCCCACAGCCAGACAGATCTATATTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGAATGGAAAGTAATAATTCCCACAGCCAGACAGATCTATATTTA  100

seq1  TAAGTATAGATCACACAAACACATCTATACTTATAAGTATCAAGCACAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATAGATCACACAAACACATCTATACTTATAAGTATCAAGCACAAC  150

seq1  AGTTTTCAGAAGAGAATATGGGTATTTTCAAGGATAAATGATGAATATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCAGAAGAGAATATGGGTATTTTCAAGGATAAATGATGAATATAT  200

seq1  TTGCTCTATTTCAATTTTCATAAGCCAATATACTGTCTTAAAAGGGTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTATTTCAATTTTCATAAGCCAATATACTGTCTTAAAAGGGTGTC  250

seq1  AAGAAATAGTTTTCACGTATCTTTTAGCTACAGCATATTTTAGAATGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATAGTTTTCACGTATCTTTTAGCTACAGCATATTTTAGAATGCTA  300

seq1  CTCTACCAATTTCCACGAGTAAAATTAATTTATAATATATGCTGTGGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCAATTTCCACGAGTAAAATTAATTTATAATATATGCTGTGGTCT  350

seq1  AAGTTGACACACGTTCATTTATCTATACATAAGGGTATATTTTTGACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGACACACGTTCATTTATCTATACATAAGGGTATATTTTTGACAAA  400

seq1  TAAAATAAAGAAAAACAGGAGTACACGAGAACAGAGGCAGACACAAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAAGAAAAACAGGAGTACACGAGAACAGAGGCAGACACAAAAGA  450

seq1  GGAAACACAAAAATACCTTCGAGAATTAAAGGAAAACACAACCAAACAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACACAAAAATACCTTCGAGAATTAAAGGAAAACACAACCAAACAGG  500

seq1  TAAAGGAATTGAACAAAAACATCCAGGACCAAAAATGAAAATAGACACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAATTGAACAAAAACATCCAGGACCAAAAATGAAAATAGACACAA  550

seq1  AGAAATCACAAATGCAGACATAATTGGAGATAGAAAACCTAGGAAAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCACAAATGCAGACATAATTGGAGATAGAAAACCTAGGAAAGAGA  600

seq1  TCAGGAGTCATAGGTTCAAGCATTACCAACAAAATACAAAAGATAGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGTCATAGGTTCAAGCATTACCAACAAAATACAAAAGATAGAAGA  650

seq1  GAGAATCTCAGGTGCAGAAGATAACATAGAAAACATTGACACAACAGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCTCAGGTGCAGAAGATAACATAGAAAACATTGACACAACAGTCA  700

seq1  AAGAAACTGGAAAAATCAAAAAGCTCCTAACAGAAAACATCCAGGAAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACTGGAAAAATCAAAAAGCTCCTAACAGAAAACATCCAGGAAATC  750

seq1  CAGAACACAATAAGAAGACCAAACCTATGAATAATAGGTATAGAAAAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACACAATAAGAAGACCAAACCTATGAATAATAGGTATAGAAAAGAG  800

seq1  AAAATATACCCAACTTAAGGGCCAATAAATATATCAACAAAATTATAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATACCCAACTTAAGGGCCAATAAATATATCAACAAAATTATAGAA  850

seq1  GAAAACTTCCCTAAACTAAAGAAAGAGAGGCCCATATATATACAAGAAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTTCCCTAAACTAAAGAAAGAGAGGCCCATATATATACAAGAAGC  900

seq1  CA  902
      ||
seq2  CA  902

seq1: chr17_90752858_90754005
seq2: B6Ng01-092N05.g_67_1213 (reverse)

seq1  AGACTATAATGTT-CAGTCCAGTAGTAGGTAGTTGCATGGGCATCTGAAA  49
      ||||||| ||||| ||||||| ||||| |||| ||||| |||||  ||||
seq2  AGACTAT-ATGTTCCAGTCCA-TAGTAAGTAG-TGCAT-GGCATTCGAAA  46

seq1  CATAGCTAA-CTGTATTCAG-AACCTAATGCTGAA-GTGTATGTAATTTC  96
      || |||||| |||||||||| |||||||||||||| ||||||||||||||
seq2  CAAAGCTAACCTGTATTCAGAAACCTAATGCTGAAGGTGTATGTAATTTC  96

seq1  AATTTA-CTTGTGTATAAATTTTTCATTGATACAGTATTCAATTATGAAG  145
      |||||| || ||| ||||||||||||||||||||||||||||||||||||
seq2  AATTTACCTGGTGAATAAATTTTTCATTGATACAGTATTCAATTATGAAG  146

seq1  AATTTTAAATAATGCATAGTGTAAATAAGTCAGTGAACCTATATAACTGC  195
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTT-AATAATGCATAGTGTAAATAAGTCAGTGAACCTATATAACTGC  195

seq1  AGACTTTACAAAACAAAGAATTTGTGACAAAAATCTTAGATTCTGAATTG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTACAAAACAAAGAATTTGTGACAAAAATCTTAGATTCTGAATTG  245

seq1  AGAGGTGTAGGTAATAATTTATATTGGCCATATTTTAAGATAATAATAAC  295
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGAGGTGTAGGTAATAATTTATA-TGGCCATATTTTAAGATAATAATAAC  294

seq1  TTATGTATAGGTTAAGAGATACTAAACTTAACTATTAAAATCAAATTTAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTATAGGTTAAGAGATACTAAACTTAACTATTAAAATCAAATTTAT  344

seq1  CTTTGTTTTTCCATCTGTATTATAACTAGTAGATAATGTAACGTTTCATA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTTTCCATCTGTATTATAACTAGTAGATAATGTAACGTTTCATA  394

seq1  TATGGCTTACACCGTATTTCAATTGGACAGTGCTAGCAGAAAAATGCATG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTTACACCGTATTTCAATTGGACAGTGCTAGCAGAAAAATGCATG  444

seq1  GGAGTTGGCAAGAACTGACAGGCAGTAAGTGCAAACACACAGTGAATCCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTGGCAAGAACTGACAGGCAGTAAGTGCAAACACACAGTGAATCCA  494

seq1  GCACAGTTTTGTCAGTGATGTAACACCAGACATTCAGCTGCGGGATGCTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGTTTTGTCAGTGATGTAACACCAGACATTCAGCTGCGGGATGCTG  544

seq1  GGGTTGGTTTCTAATGAACTAAGTTTGAGCTGCATCTGAGATATCCATGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGGTTTCTAATGAACTAAGTTTGAGCTGCATCTGAGATATCCATGT  594

seq1  GGAAATGAGTAGGCAGTGGAAATATCAGTGTGCTGATTGGTGGGGGGCAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGAGTAGGCAGTGGAAATATCAGTGTGCTGATTGGTGGGGGGCAG  644

seq1  GAGAGAAGCCAGGACTACACACATGTGCTTCAGAGTGAGAAATTGATATG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAGCCAGGACTACACACATGTGCTTCAGAGTGAGAAATTGATATG  694

seq1  TGATAAGTACAACTCAAAATAATTTTCAAGAATATTTAGATCTGTTTTCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGTACAACTCAAAATAATTTTCAAGAATATTTAGATCTGTTTTCA  744

seq1  AAGACCAATAAGTAGTAGTCAGTTAAATAGTTATTTTTTTCACCAAAGCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAATAAGTAGTAGTCAGTTAAATAGTTATTTTTTTCACCAAAGCA  794

seq1  TAAGCTTTGTCTACCAAACTTGAATTTCTCATTTTCAATAGGCAGAAAGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTTGTCTACCAAACTTGAATTTCTCATTTTCAATAGGCAGAAAGG  844

seq1  CTTTTTTAATGGACTAGGTCCAAGGCGAAAATTATTTTCCTTGATGGGAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTAATGGACTAGGTCCAAGGCGAAAATTATTTTCCTTGATGGGAA  894

seq1  AAGTCCACCTTTAAACTGTCTCCATAGAAACCTAGTTATAATATGTTCTC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCACCTTTAAACTGTCTCCATAGAAACCTAGTTATAATATGTTCTC  944

seq1  CAGTGGTCATAGAGCATTCCCTCCGTAGGAATGAACTGTACTGGCTAGAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTCATAGAGCATTCCCTCCGTAGGAATGAACTGTACTGGCTAGAC  994

seq1  AAGCTCTTCAGCTGGTTTTCAGGAGGCAACTCCTGGTTGATGCTGATAAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTTCAGCTGGTTTTCAGGAGGCAACTCCTGGTTGATGCTGATAAA  1044

seq1  GAACCCTCCTTTCTGGCTGTGCACAGCTTTAATCCCTGCTCTCGGGAGGC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCTCCTTTCTGGCTGTGCACAGCTTTAATCCCTGCTCTCGGGAGGC  1094

seq1  AGAGGCACATGGAACTCTGAGTGCCAGGCAGGCCTGGTCTACAGAGGGAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCACATGGAACTCTGAGTGCCAGGCAGGCCTGGTCTACAGAGGGAA  1144

seq1  TTC  1148
      |||
seq2  TTC  1147