BAC Information

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BAC

Clone NameB6Ng01-093O20
Chromosome17 (Build37)
Map Location 36,946,898 - 37,108,538
singlet/doubletdoublet
Overlap geneH2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps
Upstream geneIer3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5
Downstream gene2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118, Olfr119, Scocp, Olfr120, Olfr1558-ps1, Olfr121, Olfr122, Olfr123, Olfr124, Olfr125, LOC672822, Olfr126, Olfr127, Olfr128, Ppia-ps17_697.1, Olfr761, Olfr1552-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093O20.bB6Ng01-093O20.g
ACCDH905281DH905282
length1,130448
definitionDH905281|Mus musculus domesticus DNA, BAC clone: B6Ng01-093O20, 5' end.DH905282|Mus musculus domesticus DNA, BAC clone: B6Ng01-093O20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,946,898 - 36,948,029)(37,108,085 - 37,108,538)
sequence
gaattccatgccaatttaaaagaatcaagaagaaatgaagataccatagg
tttacataattaactaggacctatgtctcaacaatgacttaaccatagcc
ttttagatcagtggttctaaacatgtgggtcgcgacctccttggcaaacc
tctgtatccacaaataattacattgtgattaaaatacaaaattacaatca
tgaagtagtaaaaaataataataatttgatggttgggggtcaccacagca
tgagtatctatattaaatggttccagaattaagaaggttgaaaaccactg
ctttggataatgcactgagtcacatatgccagcagcagtgggaaggccat
taataagagatcagaaaacaaaacaggtgatcactagggaatcgctcaag
cttgttccaagactcccaaaaggaaaacctcacctccaggcaaatcatag
gctgcagaatgctgcaacctgacatctcagagcagcattcccaaccctgg
ccccagagcctccaaccaggattgaattgttatcatccaggactgaactc
agagtcacatcactggaagtgacatgaacagaggttcttacacacttcac
agaactgtacagcagccagtctagatgatcctcatttatttgtagtggat
ctcattccagatagctgaaaaaaggacctgcctaaggaacaactatttct
ccaaaatgttgaacctgtatctgctgccacacagggatgatagagttctt
cttcctgcccagcctgaactccatgccaatatggttagaaatgtattgtt
cctcccacaacataaaacaaaaagtccattcatcaccaattgatcccttc
tccagttgactataataaagataatatcttagctcccaagatagcattag
ggtttttgagtactggaattcttcaccatcaacttagggcctgattaatg
ttttcaacgttttctatggaaatattgtgccatattaatactgagttttt
gacaatttgtactgaaaggacttagtcaaagaacgtcttacttcaaatga
caatcattaacaattcagtgttgccagattcttcctattggaatgaatgc
aggccaatatgaggattcaggatgtttgat
tctctgggtagcttacaaactgtgtcagttgcgctgttcttccatctgga
cccatgttctcactcccagtgcatgtaggaattttagagaactattcaca
gtcactgtggttcttcccacaacccacagtgctagaaactccacagagag
gaacaaagtctcagtccctccagactttccacacatcaaggatggggcct
acagcaccctgtgccaccctcctgctgctctcagcattcctggctctgat
ccagaccaagaaccagagctttgctggttatggttagtgtgggtctggag
ggaaacagctccggacaacactcgggaagctgctccttctcatcgcccag
caacactctccagttcccttttctatcctatgttcggagtccggtgccct
gaacccctcttgacccgaggaaccaccagagatccccaggatgaggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_36946898_36948029
seq2: B6Ng01-093O20.b_45_1174

seq1  GAATTCCATGCCAATTTAAAAGAATCAAGAAGAAATGAAGATACCATAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCCAATTTAAAAGAATCAAGAAGAAATGAAGATACCATAGG  50

seq1  TTTACATAATTAACTAGGACCTATGTCTCAACAATGACTTAACCATAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATAATTAACTAGGACCTATGTCTCAACAATGACTTAACCATAGCC  100

seq1  TTTTAGATCAGTGGTTCTAAACATGTGGGTCGCGACCTCCTTGGCAAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGATCAGTGGTTCTAAACATGTGGGTCGCGACCTCCTTGGCAAACC  150

seq1  TCTGTATCCACAAATAATTACATTGTGATTAAAATACAAAATTACAATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATCCACAAATAATTACATTGTGATTAAAATACAAAATTACAATCA  200

seq1  TGAAGTAGTAAAAAATAATAATAATTTGATGGTTGGGGGTCACCACAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTAGTAAAAAATAATAATAATTTGATGGTTGGGGGTCACCACAGCA  250

seq1  TGAGTATCTATATTAAATGGTTCCAGAATTAAGAAGGTTGAAAACCACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATCTATATTAAATGGTTCCAGAATTAAGAAGGTTGAAAACCACTG  300

seq1  CTTTGGATAATGCACTGAGTCACATATGCCAGCAGCAGTGGGAAGGCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGATAATGCACTGAGTCACATATGCCAGCAGCAGTGGGAAGGCCAT  350

seq1  TAATAAGAGATCAGAAAACAAAACAGGTGATCACTAGGGAATCGCTCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGAGATCAGAAAACAAAACAGGTGATCACTAGGGAATCGCTCAAG  400

seq1  CTTGTTCCAAGACTCCCAAAAGGAAAACCTCACCTCCAGGCAAATCATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCCAAGACTCCCAAAAGGAAAACCTCACCTCCAGGCAAATCATAG  450

seq1  GCTGCAGAATGCTGCAACCTGACATCTCAGAGCAGCATTCCCAACCCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGAATGCTGCAACCTGACATCTCAGAGCAGCATTCCCAACCCTGG  500

seq1  CCCCAGAGCCTCCAACCAGGATTGAATTGTTATCATCCAGGACTGAACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGAGCCTCCAACCAGGATTGAATTGTTATCATCCAGGACTGAACTC  550

seq1  AGAGTCACATCACTGGAAGTGACATGAACAGAGGTTCTTACACACTTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCACATCACTGGAAGTGACATGAACAGAGGTTCTTACACACTTCAC  600

seq1  AGAACTGTACAGCAGCCAGTCTAGATGATCCTCATTTATTTGTAGTGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGTACAGCAGCCAGTCTAGATGATCCTCATTTATTTGTAGTGGAT  650

seq1  CTCATTCCAGATAGCTGAAAAAAGGACCTGCCTAAGGAACAACTATTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCCAGATAGCTGAAAAAAGGACCTGCCTAAGGAACAACTATTTCT  700

seq1  CCAAAATGTTGAACCTGTATCTGCTGCCACACAGGGATGATAGAGTTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATGTTGAACCTGTATCTGCTGCCACACAGGGATGATAGAGTTCTT  750

seq1  CTTCCTGCCCAGCCTGAACTCCATGCCAATATGGTTAGAAATGTATTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGCCCAGCCTGAACTCCATGCCAATATGGTTAGAAATGTATTGTT  800

seq1  CCTCCCACAACATAAAACAAAAAGTCCATTCATCACCAATTGATCCCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCACAACATAAAACAAAAAGTCCATTCATCACCAATTGATCCCTTC  850

seq1  TCCAGTTGACTATAATAAAGATAATATCTTAGCTCCCAAGATAGCATTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTGACTATAATAAAGATAATATCTTAGCTCCCAAGATAGCATTAG  900

seq1  GGTTTTTGAGTACTGGAATTCTTCACCATCAACTTAGGGCCTGATTAATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTGAGTACTGGAATTCTTCACCATCAACTTAGGGCCTGATTAATG  950

seq1  TTTTCAACGTTTTCTATGGAAAATATGTGGCCATATTAATAACTGAGTTT  1000
      ||||||||||||||||||| ||||||   ||||||||||| |||||||||
seq2  TTTTCAACGTTTTCTATGG-AAATATTGTGCCATATTAAT-ACTGAGTTT  998

seq1  TTGACAATTTGTACTGAAAGGACTTAGTCAAAGAACGTCTTACTTCAAAA  1050
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTGACAATTTGTACTGAAAGGACTTAGTCAAAGAACGTCTTACTTC-AAA  1047

seq1  TGACATTCATTAAC-ATTCAGTG-TGCAAGATTC-TCCTATGGATATGAA  1097
      ||||| |||||||| |||||||| ||| |||||| |||||| |  |||||
seq2  TGACAATCATTAACAATTCAGTGTTGCCAGATTCTTCCTATTGGAATGAA  1097

seq1  TGCA-GCCAATAATGAAGAATTCAGGGATGTTTGAT  1132
      |||| |||||| ||| || ||||| |||||||||||
seq2  TGCAGGCCAAT-ATG-AGGATTCA-GGATGTTTGAT  1130

seq1: chr17_37108085_37108538
seq2: B6Ng01-093O20.g_69_522 (reverse)

seq1  GACCTCATCCTGGGGATCTCTGGTGGTTCCTCGGGTCAAGAGGGGTTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCATCCTGGGGATCTCTGGTGGTTCCTCGGGTCAAGAGGGGTTCAG  50

seq1  GGCACCGGACTCCGAACATAGGATAGAAAAGGGAACTGGAGAGTGTTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCGGACTCCGAACATAGGATAGAAAAGGGAACTGGAGAGTGTTGCT  100

seq1  GGGCGATGAGAAGGAGCAGCTTCCCGAGTGTTGTCCGGAGCTGTTTCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGATGAGAAGGAGCAGCTTCCCGAGTGTTGTCCGGAGCTGTTTCCCT  150

seq1  CCAGACCCACACTAACCATAACCAGCAAAGCTCTGGTTCTTGGTCTGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCCACACTAACCATAACCAGCAAAGCTCTGGTTCTTGGTCTGGAT  200

seq1  CAGAGCCAGGAATGCTGAGAGCAGCAGGAGGGTGGCACAGGGTGCTGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCAGGAATGCTGAGAGCAGCAGGAGGGTGGCACAGGGTGCTGTAG  250

seq1  GCCCCATCCTTGATGTGTGGAAAGTCTGGAGGGACTGAGACTTTGTTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCATCCTTGATGTGTGGAAAGTCTGGAGGGACTGAGACTTTGTTCCT  300

seq1  CTCTGTGGAGTTTCTAGCACTGTGGGTTGTGGGAAGAACCACAGTGACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGGAGTTTCTAGCACTGTGGGTTGTGGGAAGAACCACAGTGACTG  350

seq1  TGAATAGTTCTCTAAAATTCCTACATGCACTGGGAGTGAGAACATGGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGTTCTCTAAAATTCCTACATGCACTGGGAGTGAGAACATGGGTC  400

seq1  CAGATGGAAGAACAGCGCAACTGACACAGTTTGTAAGCTACCCAGAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGAAGAACAGCGCAACTGACACAGTTTGTAAGCTACCCAGAGAGA  450

seq1  ATTC  454
      ||||
seq2  ATTC  454