BAC Information

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BAC

Clone NameB6Ng01-094M02
Chromosome17 (Build37)
Map Location 16,444,696 - 16,629,910
singlet/doubletdoublet
Overlap geneLOC100041383, LOC100041394
Upstream geneLOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
Downstream geneLOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238, EG626854, LOC100041965, Riok2, Lix1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094M02.bB6Ng01-094M02.g
ACCDH905888DH905889
length1,113910
definitionDH905888|Mus musculus domesticus DNA, BAC clone: B6Ng01-094M02, 5' end.DH905889|Mus musculus domesticus DNA, BAC clone: B6Ng01-094M02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,444,696 - 16,445,726)(16,629,336 - 16,629,910)
sequence
gaattcatatgtgcataagtcctgttatgtcggaaagatactgtttcctt
gaagtcatctaccactttcttttctgtactaattcctgagccctgaaaag
agagggttgataaagacattccatttcacctgatgccttagttagaattt
tcaatgctatgaagagacaccatgagcaggtcaactcttgtaaggacagt
atttaattggggctggcttacactatcagtggttcagtccattatcatgg
aggaaagcaaggcagcatccaagtagccatggcattggaggagataagag
tttacatcttaatctgtcctccaggcccataggaggagggtctcaaagtc
tacccctacaatgacacaattggttcaataaggccacacttactccaatg
aggccacacctcctaatagtgccacttcttgggccaaacatattcaaacc
accacagctgagtattccaaagtttctgcatttgatatacaaataacaaa
cacactgagaaagaaatcatgtaaacaaaacctttcacaatagcttcaaa
aaatgaatattaggataactctaagcaagtgaaagacttttatatgtatt
tagaatttttctttgtgtgtgtgtgtataaaacaacaccctgaatttgaa
ggagagcaaggggtgacactggttatataaatcacactctaggaaggaag
gtacatgggatggtttggaaagagtgaaaggaaaatgatataattataag
tttaaaaattatatgaaagtacaaataatatatattcaaaaggcaggcat
cttgaaatgctaattaggacatacatgttaatgtaccaggcaagattctt
cactgaataattcaaaagaaataatagacattgtcttttcacttatgagt
catggtcacagaatttcatggaaacaagcctgggaacttagactatagaa
atttccttgattatctacatatggatttttattctgtagctaaaactctg
tagtgcttggcagatatacaaatgagacactttattgacctacttgacat
gggaaaagtggagtaacatgtttggaaattatctgggacttccacgatag
ttgtatttttcaa
gaattcaccaatttggttcttttactacgttctgtttataaacttgaagc
acttacacttatctccagtatttggaaggtccccctagctcttccttggc
agcactgtgaaggtacacatctaccattttcaagccccgggcaacatgcc
atagtttctgttttagtcatggaactttttatggtatttcacaatatctt
ttccaaactccattgccgcaaactagtgactcaccttcatcaagaagtat
ttgtaaatgatactgcagaagaggaggcagaaagactgtaagagacacag
gagatggaggaaaccaaggaaataaagccatctaaacacagtaggaccaa
tgtacataggaacccagagagacccaggcagcacaggacccgcacagatc
taaattagtaggggcctagtgctgagacaagaagagagtacaagtcccat
ctctaacccagtagctattcagagactgccccacctagggattgatccta
tctgaagacaacaaagccagacactattgctgacaccaagaagcctttgc
tgacaggagcctggtatagctgtctcctgagaggctgtgccagagcctga
ccaatacagatgtggatgcttgcagcttactgagcgcagggtccccaatg
aaagagtgaagggaaggactgaaggagctgaaggagattgcgaccccata
ggaagaacgacattaactaaccagacacccccacccaatagcgccaagag
actaacccaccaaacaaagaatacacatggagggtcccatggctccagct
gcatatgtagcagaggaaagccttacctggcatcagtgggaggggatgtc
cttgatcatgtggaggctcaatgccccattgttggggaatgctaggacag
tgaagcagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_16444696_16445726
seq2: B6Ng01-094M02.b_138_1157

seq1  TGAAAAGAGAGGGTTGATAAAGACATTCCATTTCACCTGATGCCTTAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGAGAGGGTTGATAAAGACATTCCATTTCACCTGATGCCTTAGTT  50

seq1  AGAATTTTCAATGCTATGAAGAGACACCATGAGCAGGTCAACTCTTGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTTCAATGCTATGAAGAGACACCATGAGCAGGTCAACTCTTGTAA  100

seq1  GGACAGTATTTAATTGGGGCTGGCTTACACTATCAGTGGTTCAGTCCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTATTTAATTGGGGCTGGCTTACACTATCAGTGGTTCAGTCCATT  150

seq1  ATCATGGAGGAAAGCAAGGCAGCATCCAAGTAGCCATGGCATTGGAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGAGGAAAGCAAGGCAGCATCCAAGTAGCCATGGCATTGGAGGAG  200

seq1  ATAAGAGTTTACATCTTAATCTGTCCTCCAGGCCCATAGGAGGAGGGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGTTTACATCTTAATCTGTCCTCCAGGCCCATAGGAGGAGGGTCT  250

seq1  CAAAGTCTACCCCTACAATGACACAATTGGTTCAATAAGGCCACACTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCTACCCCTACAATGACACAATTGGTTCAATAAGGCCACACTTAC  300

seq1  TCCAATGAGGCCACACCTCCTAATAGTGCCACTTCTTGGGCCAAACATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGAGGCCACACCTCCTAATAGTGCCACTTCTTGGGCCAAACATAT  350

seq1  TCAAACCACCACAGCTGAGTATTCCAAAGTTTCTGCATTTGATATACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCACCACAGCTGAGTATTCCAAAGTTTCTGCATTTGATATACAAA  400

seq1  TAACAAACACACTGAGAAAGAAATCATGTAAACAAAACCTTTCACAATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAACACACTGAGAAAGAAATCATGTAAACAAAACCTTTCACAATAG  450

seq1  CTTCAAAAAATGAATATTAGGATAACTCTAAGCAAGTGAAAGACTTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAAAATGAATATTAGGATAACTCTAAGCAAGTGAAAGACTTTTAT  500

seq1  ATGTATTTAGAATTTTTCTTTGTGTGTGTGTGTATAAAACAACACCCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTAGAATTTTTCTTTGTGTGTGTGTGTATAAAACAACACCCTGA  550

seq1  ATTTGAAGGAGAGCAAGGGGTGACACTGGTTATATAAATCACACTCTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAGGAGAGCAAGGGGTGACACTGGTTATATAAATCACACTCTAGG  600

seq1  AAGGAAGGTACATGGGATGGTTTGGAAAGAGTGAAAGGAAAATGATATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGTACATGGGATGGTTTGGAAAGAGTGAAAGGAAAATGATATAA  650

seq1  TTATAAGTTTAAAAATTATATGAAAGTACAAATAATATATATTCAAAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGTTTAAAAATTATATGAAAGTACAAATAATATATATTCAAAAGG  700

seq1  CAGGCATCTTGAAATGCTAATTAGGACATACATGTTAATGTACCAGGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATCTTGAAATGCTAATTAGGACATACATGTTAATGTACCAGGCAA  750

seq1  GATTCTTCACTGAATAATTCAAAAGAAATAATAGACATTGTCTTTTCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTCACTGAATAATTCAAAAGAAATAATAGACATTGTCTTTTCACT  800

seq1  TATGAGTCATGGTCACAGAATTTCATGGAAACAAGCCTGGGAACTTAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTCATGGTCACAGAATTTCATGGAAACAAGCCTGGGAACTTAGAC  850

seq1  TATAGAAATTTCCTTGATTATCTAACATATGGA-TTTTATTCTGTAGCTA  899
      ||||||||||||||||||||||| ||||||||| ||||||||||||||| 
seq2  TATAGAAATTTCCTTGATTATCT-ACATATGGATTTTTATTCTGTAGCT-  898

seq1  AAAACTCTGTAAGTGCTGGGCAAGATATACAAATGAGACACTTTATTGAA  949
      |||||||||| |||||| ||| |||||||||||||||||||||||||| |
seq2  AAAACTCTGT-AGTGCTTGGC-AGATATACAAATGAGACACTTTATTG-A  945

seq1  CATACTTGAACATGGGATAAGT-GAGTAAAACCATGTTTTGGAAATTAAT  998
      | |||||| |||||||| |||| ||||||   |||| |||||||||| ||
seq2  CCTACTTG-ACATGGGAAAAGTGGAGTAA---CATG-TTTGGAAATT-AT  989

seq1  CTGGGGACTTCCACGATAGTTTGTATTTTTCAA  1031
      || |||||||||||||||| |||||||||||||
seq2  CT-GGGACTTCCACGATAG-TTGTATTTTTCAA  1020

seq1: chr17_16629336_16629910
seq2: B6Ng01-094M02.g_70_644 (reverse)

seq1  AGACAGCTATACCAGGCTCCTGTCAGCAAAGGCTTCTTGGTGTCAGCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCTATACCAGGCTCCTGTCAGCAAAGGCTTCTTGGTGTCAGCAAT  50

seq1  AGTGTCTGGCTTTGTTGTCTTCAGATAGGATCAATCCCTAGGTGGGGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTGGCTTTGTTGTCTTCAGATAGGATCAATCCCTAGGTGGGGCAG  100

seq1  TCTCTGAATAGCTACTGGGTTAGAGATGGGACTTGTACTCTCTTCTTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAATAGCTACTGGGTTAGAGATGGGACTTGTACTCTCTTCTTGTC  150

seq1  TCAGCACTAGGCCCCTACTAATTTAGATCTGTGCGGGTCCTGTGCTGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACTAGGCCCCTACTAATTTAGATCTGTGCGGGTCCTGTGCTGCCT  200

seq1  GGGTCTCTCTGGGTTCCTATGTACATTGGTCCTACTGTGTTTAGATGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTCTCTGGGTTCCTATGTACATTGGTCCTACTGTGTTTAGATGGCT  250

seq1  TTATTTCCTTGGTTTCCTCCATCTCCTGTGTCTCTTACAGTCTTTCTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCCTTGGTTTCCTCCATCTCCTGTGTCTCTTACAGTCTTTCTGCC  300

seq1  TCCTCTTCTGCAGTATCATTTACAAATACTTCTTGATGAAGGTGAGTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTCTGCAGTATCATTTACAAATACTTCTTGATGAAGGTGAGTCAC  350

seq1  TAGTTTGCGGCAATGGAGTTTGGAAAAGATATTGTGAAATACCATAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGCGGCAATGGAGTTTGGAAAAGATATTGTGAAATACCATAAAAA  400

seq1  GTTCCATGACTAAAACAGAAACTATGGCATGTTGCCCGGGGCTTGAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATGACTAAAACAGAAACTATGGCATGTTGCCCGGGGCTTGAAAAT  450

seq1  GGTAGATGTGTACCTTCACAGTGCTGCCAAGGAAGAGCTAGGGGGACCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGATGTGTACCTTCACAGTGCTGCCAAGGAAGAGCTAGGGGGACCTT  500

seq1  CCAAATACTGGAGATAAGTGTAAGTGCTTCAAGTTTATAAACAGAACGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATACTGGAGATAAGTGTAAGTGCTTCAAGTTTATAAACAGAACGTA  550

seq1  GTAAAAGAACCAAATTGGTGAATTC  575
      |||||||||||||||||||||||||
seq2  GTAAAAGAACCAAATTGGTGAATTC  575